g.arboreum_cottongen_reftransV1_0002791, g.arboreum_cottongen_reftransV1_0002791 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0002791
Unique Nameg.arboreum_cottongen_reftransV1_0002791
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length352
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold2748supercontigg.arboreum_cottongen_reftransV1_0002791:1..352 .
scaffold2748:30925..31276 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: Q67ZD4_ARATH (AT1G26300 protein OS=Arabidopsis thaliana GN=At1g26300 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.069e-16
Identity = 49/87 (56.32%), Postives = 56/87 (64.37%), Query Frame = 2
Query:   44 MEDFWQRAKSFAEETAKKSQTLTMPNK--IADLVADTAKKSKELAFEASKKAD----------------ELALEASKKADELRVAAL 250
            MED W+RAKSFAEE  KKSQT+T  +     +LV +TAKKSKELA EASKKAD                E A EASKKAD+ +VAAL
Sbjct:    1 MEDLWKRAKSFAEEAGKKSQTITQSSSATFVNLVTETAKKSKELALEASKKADQFNAADFVAETAKKSKEFAAEASKKADQFKVAAL 87          
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: Q9C674_ARATH (Putative uncharacterized protein F28B23.4 OS=Arabidopsis thaliana GN=F28B23.4 PE=4 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.604e-16
Identity = 49/87 (56.32%), Postives = 56/87 (64.37%), Query Frame = 2
Query:   44 MEDFWQRAKSFAEETAKKSQTLTMPNK--IADLVADTAKKSKELAFEASKKAD----------------ELALEASKKADELRVAAL 250
            MED W+RAKSFAEE  KKSQT+T  +     +LV +TAKKSKELA EASKKAD                E A EASKKAD+ +VAAL
Sbjct:    1 MEDLWKRAKSFAEEAGKKSQTITQSSSATFVNLVTETAKKSKELALEASKKADQFNAADFVAETAKKSKEFAAEASKKADQFKVAAL 87          
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: A0A072UE44_MEDTR (BSD domain protein OS=Medicago truncatula GN=MTR_5g048180 PE=4 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.443e-16
Identity = 44/68 (64.71%), Postives = 57/68 (83.82%), Query Frame = 2
Query:   44 MEDFWQRAKSFAEETAKKSQTLTM---PNKIADLVADTAKKSKELAFEASKKADELALEASKKADELR 238
            MEDFW+RAK+FAEE AKKSQ+LT     ++IADLV++TAKKSKELA EASKKADE+   A ++AD+++
Sbjct:    1 MEDFWKRAKTFAEEAAKKSQSLTTSSATSRIADLVSETAKKSKELAAEASKKADEIKSAALRQADQIK 68          
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: A0A067FSG3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029422mg PE=4 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.558e-16
Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = 2
Query:   44 MEDFWQRAKSFAEETAKKSQTLTMPNKIADLVADTAKKSKELAFEASKKADELALEASKKADELRVAAL 250
            ME FW +AK+FAEE A KSQ+LT   KIADL A+TAKKSKE A EASKKADE    A K+AD++ + ++
Sbjct:    1 MESFWNKAKTFAEEAANKSQSLTNSTKIADLFAETAKKSKEFALEASKKADEFKTAALKQADQIPIKSI 69          
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: G7JZ95_MEDTR (BSD domain protein OS=Medicago truncatula GN=MTR_5g048180 PE=4 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.978e-16
Identity = 44/68 (64.71%), Postives = 57/68 (83.82%), Query Frame = 2
Query:   44 MEDFWQRAKSFAEETAKKSQTLTM---PNKIADLVADTAKKSKELAFEASKKADELALEASKKADELR 238
            MEDFW+RAK+FAEE AKKSQ+LT     ++IADLV++TAKKSKELA EASKKADE+   A ++AD+++
Sbjct:    1 MEDFWKRAKTFAEEAAKKSQSLTTSSATSRIADLVSETAKKSKELAAEASKKADEIKSAALRQADQIK 68          
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: A0A072UEQ6_MEDTR (BSD domain protein OS=Medicago truncatula GN=MTR_5g048180 PE=4 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.208e-16
Identity = 44/68 (64.71%), Postives = 57/68 (83.82%), Query Frame = 2
Query:   44 MEDFWQRAKSFAEETAKKSQTLTM---PNKIADLVADTAKKSKELAFEASKKADELALEASKKADELR 238
            MEDFW+RAK+FAEE AKKSQ+LT     ++IADLV++TAKKSKELA EASKKADE+   A ++AD+++
Sbjct:    1 MEDFWKRAKTFAEEAAKKSQSLTTSSATSRIADLVSETAKKSKELAAEASKKADEIKSAALRQADQIK 68          
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: V4THI0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032260mg PE=4 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.641e-16
Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = 2
Query:   44 MEDFWQRAKSFAEETAKKSQTLTMPNKIADLVADTAKKSKELAFEASKKADELALEASKKADELRVAAL 250
            ME FW +AK+FAEE A KSQ+LT   KIADL A+TAKKSKE A EASKKADE    A K+AD++ + ++
Sbjct:    1 MESFWNKAKTFAEEAANKSQSLTNSTKIADLFAETAKKSKEFALEASKKADEFKTAALKQADQIPIKSI 69          
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: B9RLG7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1466900 PE=4 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.177e-16
Identity = 44/54 (81.48%), Postives = 47/54 (87.04%), Query Frame = 2
Query:   44 MEDFWQRAKSFAEETAKKSQTLTMP-NKIADLVADTAKKSKELAFEASKKADEL 202
            MED W+RAK FAEE AKKSQTLT   NKIADLVA+TAKKSKELA EASKKAD+L
Sbjct:    1 MEDIWKRAKVFAEEAAKKSQTLTSSSNKIADLVAETAKKSKELALEASKKADQL 54          
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: F4IE56_ARATH (BSD domain-containing protein OS=Arabidopsis thaliana GN=At1g26300 PE=4 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.142e-16
Identity = 49/87 (56.32%), Postives = 56/87 (64.37%), Query Frame = 2
Query:   44 MEDFWQRAKSFAEETAKKSQTLTMPNK--IADLVADTAKKSKELAFEASKKAD----------------ELALEASKKADELRVAAL 250
            MED W+RAKSFAEE  KKSQT+T  +     +LV +TAKKSKELA EASKKAD                E A EASKKAD+ +VAAL
Sbjct:    1 MEDLWKRAKSFAEEAGKKSQTITQSSSATFVNLVTETAKKSKELALEASKKADQFNAADFVAETAKKSKEFAAEASKKADQFKVAAL 87          
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: Q67YP2_ARATH (MRNA, complete cds, clone: RAFL24-17-M19 OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.241e-15
Identity = 49/87 (56.32%), Postives = 56/87 (64.37%), Query Frame = 2
Query:   44 MEDFWQRAKSFAEETAKKSQTLTMPNK--IADLVADTAKKSKELAFEASKKAD----------------ELALEASKKADELRVAAL 250
            MED W+RAKSFAEE  KKSQT+T  +     +LV +TAKKSKELA EASKKAD                E A EASKKAD+ +VAAL
Sbjct:    1 MEDLWKRAKSFAEEAGKKSQTITQSSSATFVNLVTETAKKSKELALEASKKADQFNAADFVAETAKKSKEFAAEASKKADQFKVAAL 87          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
Q67ZD4_ARATH2.069e-1656.32AT1G26300 protein OS=Arabidopsis thaliana GN=At1g2... [more]
Q9C674_ARATH2.604e-1656.32Putative uncharacterized protein F28B23.4 OS=Arabi... [more]
A0A072UE44_MEDTR3.443e-1664.71BSD domain protein OS=Medicago truncatula GN=MTR_5... [more]
A0A067FSG3_CITSI3.558e-1660.87Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
G7JZ95_MEDTR3.978e-1664.71BSD domain protein OS=Medicago truncatula GN=MTR_5... [more]
A0A072UEQ6_MEDTR5.208e-1664.71BSD domain protein OS=Medicago truncatula GN=MTR_5... [more]
V4THI0_9ROSI5.641e-1660.87Uncharacterized protein OS=Citrus clementina GN=CI... [more]
B9RLG7_RICCO6.177e-1681.48Putative uncharacterized protein OS=Ricinus commun... [more]
F4IE56_ARATH9.142e-1656.32BSD domain-containing protein OS=Arabidopsis thali... [more]
Q67YP2_ARATH1.241e-1556.32MRNA, complete cds, clone: RAFL24-17-M19 OS=Arabid... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31923:SF7BSD DOMAIN-CONTAINING PROTEINcoord: 1..103
NoneNo IPR availablePANTHERPTHR31923FAMILY NOT NAMEDcoord: 1..103

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0002791 ID=g.arboreum_cottongen_reftransV1_0002791; Name=g.arboreum_cottongen_reftransV1_0002791; organism=Gossypium arboreum; type=contig; length=352bp
AGAAGATCAAAAGAATCAAATCCATCCGATTCAAATCCCAAAAATGGAAG
ATTTTTGGCAGCGCGCCAAGTCCTTCGCGGAAGAAACGGCGAAGAAATCT
CAGACCCTAACAATGCCAAACAAAATCGCGGATCTAGTCGCCGACACCGC
TAAGAAGTCCAAGGAGCTTGCTTTTGAAGCCTCCAAGAAAGCCGATGAGC
TGGCTCTTGAAGCTTCCAAAAAGGCCGATGAGCTCAGAGTCGCCGCTCTC
AAACAAGCCGATCAAATCCAACTCCAAAGCCAAAGTCTCTCCAAGTCCAT
TTCCGACATTATCCCTCCTCAACTCTCCTCCCTCTCCATTGCCTCCTCGG
AT
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