g.arboreum_cottongen_reftransV1_0002791, g.arboreum_cottongen_reftransV1_0002791 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: Q67ZD4_ARATH (AT1G26300 protein OS=Arabidopsis thaliana GN=At1g26300 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 2.069e-16 Identity = 49/87 (56.32%), Postives = 56/87 (64.37%), Query Frame = 2 Query: 44 MEDFWQRAKSFAEETAKKSQTLTMPNK--IADLVADTAKKSKELAFEASKKAD----------------ELALEASKKADELRVAAL 250 MED W+RAKSFAEE KKSQT+T + +LV +TAKKSKELA EASKKAD E A EASKKAD+ +VAAL Sbjct: 1 MEDLWKRAKSFAEEAGKKSQTITQSSSATFVNLVTETAKKSKELALEASKKADQFNAADFVAETAKKSKEFAAEASKKADQFKVAAL 87
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: Q9C674_ARATH (Putative uncharacterized protein F28B23.4 OS=Arabidopsis thaliana GN=F28B23.4 PE=4 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 2.604e-16 Identity = 49/87 (56.32%), Postives = 56/87 (64.37%), Query Frame = 2 Query: 44 MEDFWQRAKSFAEETAKKSQTLTMPNK--IADLVADTAKKSKELAFEASKKAD----------------ELALEASKKADELRVAAL 250 MED W+RAKSFAEE KKSQT+T + +LV +TAKKSKELA EASKKAD E A EASKKAD+ +VAAL Sbjct: 1 MEDLWKRAKSFAEEAGKKSQTITQSSSATFVNLVTETAKKSKELALEASKKADQFNAADFVAETAKKSKEFAAEASKKADQFKVAAL 87
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: A0A072UE44_MEDTR (BSD domain protein OS=Medicago truncatula GN=MTR_5g048180 PE=4 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 3.443e-16 Identity = 44/68 (64.71%), Postives = 57/68 (83.82%), Query Frame = 2 Query: 44 MEDFWQRAKSFAEETAKKSQTLTM---PNKIADLVADTAKKSKELAFEASKKADELALEASKKADELR 238 MEDFW+RAK+FAEE AKKSQ+LT ++IADLV++TAKKSKELA EASKKADE+ A ++AD+++ Sbjct: 1 MEDFWKRAKTFAEEAAKKSQSLTTSSATSRIADLVSETAKKSKELAAEASKKADEIKSAALRQADQIK 68
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: A0A067FSG3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029422mg PE=4 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 3.558e-16 Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = 2 Query: 44 MEDFWQRAKSFAEETAKKSQTLTMPNKIADLVADTAKKSKELAFEASKKADELALEASKKADELRVAAL 250 ME FW +AK+FAEE A KSQ+LT KIADL A+TAKKSKE A EASKKADE A K+AD++ + ++ Sbjct: 1 MESFWNKAKTFAEEAANKSQSLTNSTKIADLFAETAKKSKEFALEASKKADEFKTAALKQADQIPIKSI 69
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: G7JZ95_MEDTR (BSD domain protein OS=Medicago truncatula GN=MTR_5g048180 PE=4 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 3.978e-16 Identity = 44/68 (64.71%), Postives = 57/68 (83.82%), Query Frame = 2 Query: 44 MEDFWQRAKSFAEETAKKSQTLTM---PNKIADLVADTAKKSKELAFEASKKADELALEASKKADELR 238 MEDFW+RAK+FAEE AKKSQ+LT ++IADLV++TAKKSKELA EASKKADE+ A ++AD+++ Sbjct: 1 MEDFWKRAKTFAEEAAKKSQSLTTSSATSRIADLVSETAKKSKELAAEASKKADEIKSAALRQADQIK 68
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: A0A072UEQ6_MEDTR (BSD domain protein OS=Medicago truncatula GN=MTR_5g048180 PE=4 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 5.208e-16 Identity = 44/68 (64.71%), Postives = 57/68 (83.82%), Query Frame = 2 Query: 44 MEDFWQRAKSFAEETAKKSQTLTM---PNKIADLVADTAKKSKELAFEASKKADELALEASKKADELR 238 MEDFW+RAK+FAEE AKKSQ+LT ++IADLV++TAKKSKELA EASKKADE+ A ++AD+++ Sbjct: 1 MEDFWKRAKTFAEEAAKKSQSLTTSSATSRIADLVSETAKKSKELAAEASKKADEIKSAALRQADQIK 68
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: V4THI0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032260mg PE=4 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 5.641e-16 Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = 2 Query: 44 MEDFWQRAKSFAEETAKKSQTLTMPNKIADLVADTAKKSKELAFEASKKADELALEASKKADELRVAAL 250 ME FW +AK+FAEE A KSQ+LT KIADL A+TAKKSKE A EASKKADE A K+AD++ + ++ Sbjct: 1 MESFWNKAKTFAEEAANKSQSLTNSTKIADLFAETAKKSKEFALEASKKADEFKTAALKQADQIPIKSI 69
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: B9RLG7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1466900 PE=4 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 6.177e-16 Identity = 44/54 (81.48%), Postives = 47/54 (87.04%), Query Frame = 2 Query: 44 MEDFWQRAKSFAEETAKKSQTLTMP-NKIADLVADTAKKSKELAFEASKKADEL 202 MED W+RAK FAEE AKKSQTLT NKIADLVA+TAKKSKELA EASKKAD+L Sbjct: 1 MEDIWKRAKVFAEEAAKKSQTLTSSSNKIADLVAETAKKSKELALEASKKADQL 54
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: F4IE56_ARATH (BSD domain-containing protein OS=Arabidopsis thaliana GN=At1g26300 PE=4 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 9.142e-16 Identity = 49/87 (56.32%), Postives = 56/87 (64.37%), Query Frame = 2 Query: 44 MEDFWQRAKSFAEETAKKSQTLTMPNK--IADLVADTAKKSKELAFEASKKAD----------------ELALEASKKADELRVAAL 250 MED W+RAKSFAEE KKSQT+T + +LV +TAKKSKELA EASKKAD E A EASKKAD+ +VAAL Sbjct: 1 MEDLWKRAKSFAEEAGKKSQTITQSSSATFVNLVTETAKKSKELALEASKKADQFNAADFVAETAKKSKEFAAEASKKADQFKVAAL 87
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Match: Q67YP2_ARATH (MRNA, complete cds, clone: RAFL24-17-M19 OS=Arabidopsis thaliana PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.241e-15 Identity = 49/87 (56.32%), Postives = 56/87 (64.37%), Query Frame = 2 Query: 44 MEDFWQRAKSFAEETAKKSQTLTMPNK--IADLVADTAKKSKELAFEASKKAD----------------ELALEASKKADELRVAAL 250 MED W+RAKSFAEE KKSQT+T + +LV +TAKKSKELA EASKKAD E A EASKKAD+ +VAAL Sbjct: 1 MEDLWKRAKSFAEEAGKKSQTITQSSSATFVNLVTETAKKSKELALEASKKADQFNAADFVAETAKKSKEFAAEASKKADQFKVAAL 87 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0002791 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0002791 ID=g.arboreum_cottongen_reftransV1_0002791; Name=g.arboreum_cottongen_reftransV1_0002791; organism=Gossypium arboreum; type=contig; length=352bpback to top |