g.arboreum_cottongen_reftransV1_0001303, g.arboreum_cottongen_reftransV1_0001303 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: A0A0B0MGL4_GOSAR (Putative histone-lysine N-methyltransferase ATXR3-like protein OS=Gossypium arboreum GN=F383_18336 PE=4 SV=1) HSP 1 Score: 332.413 bits (851), Expect = 2.271e-101 Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = -1 Query: 3 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWKVAPINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVTS 527 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKERHCSRSSRSHSTTSDVKKSSAESDSLSKAVNDQRLKGSWKVAPINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVTS Sbjct: 954 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKERHCSRSSRSHSTTSDVKKSSAESDSLSKAVNDQRLKGSWKVAPINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVTS 1128
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: A0A0D2R6D4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G208600 PE=4 SV=1) HSP 1 Score: 330.102 bits (845), Expect = 1.454e-100 Identity = 172/175 (98.29%), Postives = 173/175 (98.86%), Query Frame = -1 Query: 3 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWKVAPINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVTS 527 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKERH SRSSRSHSTTSDVKKSSAESDSLSKAVNDQRLKGSWK APINTPKDHVCT+DELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVTS Sbjct: 957 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKERHSSRSSRSHSTTSDVKKSSAESDSLSKAVNDQRLKGSWKFAPINTPKDHVCTIDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVTS 1131
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: A0A061EAD1_THECC (SET domain protein 2 isoform 2 OS=Theobroma cacao GN=TCM_007803 PE=4 SV=1) HSP 1 Score: 290.812 bits (743), Expect = 7.288e-87 Identity = 151/176 (85.80%), Postives = 160/176 (90.91%), Query Frame = -1 Query: 3 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWK-VAPINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVTS 527 LPPWAFS EER+DC DISRSNQIKPS VRG KGTMLPVVRINACVVQDQGSFVSAPRTK R KER+ SRS+RSHSTTSD+KKSSAESDSLSKAV DQ LKGSWK +AP+NTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSS SELQ LVDQG I K+SS FRKYDQ+W+PVTS Sbjct: 962 LPPWAFSSTEERSDCTDISRSNQIKPSVVRGAKGTMLPVVRINACVVQDQGSFVSAPRTKVRGKERYSSRSARSHSTTSDIKKSSAESDSLSKAVTDQGLKGSWKCIAPVNTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSLSELQVLVDQGAIQKHSSVFRKYDQVWIPVTS 1137
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: A0A061E4G1_THECC (SET domain protein 2 isoform 4 OS=Theobroma cacao GN=TCM_007803 PE=4 SV=1) HSP 1 Score: 290.426 bits (742), Expect = 7.317e-87 Identity = 151/176 (85.80%), Postives = 160/176 (90.91%), Query Frame = -1 Query: 3 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWK-VAPINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVTS 527 LPPWAFS EER+DC DISRSNQIKPS VRG KGTMLPVVRINACVVQDQGSFVSAPRTK R KER+ SRS+RSHSTTSD+KKSSAESDSLSKAV DQ LKGSWK +AP+NTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSS SELQ LVDQG I K+SS FRKYDQ+W+PVTS Sbjct: 962 LPPWAFSSTEERSDCTDISRSNQIKPSVVRGAKGTMLPVVRINACVVQDQGSFVSAPRTKVRGKERYSSRSARSHSTTSDIKKSSAESDSLSKAVTDQGLKGSWKCIAPVNTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSLSELQVLVDQGAIQKHSSVFRKYDQVWIPVTS 1137
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: A0A061E2H4_THECC (SET domain protein 2 isoform 3 OS=Theobroma cacao GN=TCM_007803 PE=4 SV=1) HSP 1 Score: 290.426 bits (742), Expect = 9.452e-87 Identity = 151/176 (85.80%), Postives = 160/176 (90.91%), Query Frame = -1 Query: 3 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWK-VAPINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVTS 527 LPPWAFS EER+DC DISRSNQIKPS VRG KGTMLPVVRINACVVQDQGSFVSAPRTK R KER+ SRS+RSHSTTSD+KKSSAESDSLSKAV DQ LKGSWK +AP+NTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSS SELQ LVDQG I K+SS FRKYDQ+W+PVTS Sbjct: 962 LPPWAFSSTEERSDCTDISRSNQIKPSVVRGAKGTMLPVVRINACVVQDQGSFVSAPRTKVRGKERYSSRSARSHSTTSDIKKSSAESDSLSKAVTDQGLKGSWKCIAPVNTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSLSELQVLVDQGAIQKHSSVFRKYDQVWIPVTS 1137
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: A0A061E3M9_THECC (SET domain protein 2 isoform 1 OS=Theobroma cacao GN=TCM_007803 PE=4 SV=1) HSP 1 Score: 289.656 bits (740), Expect = 2.037e-86 Identity = 151/176 (85.80%), Postives = 160/176 (90.91%), Query Frame = -1 Query: 3 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWK-VAPINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVTS 527 LPPWAFS EER+DC DISRSNQIKPS VRG KGTMLPVVRINACVVQDQGSFVSAPRTK R KER+ SRS+RSHSTTSD+KKSSAESDSLSKAV DQ LKGSWK +AP+NTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSS SELQ LVDQG I K+SS FRKYDQ+W+PVTS Sbjct: 962 LPPWAFSSTEERSDCTDISRSNQIKPSVVRGAKGTMLPVVRINACVVQDQGSFVSAPRTKVRGKERYSSRSARSHSTTSDIKKSSAESDSLSKAVTDQGLKGSWKCIAPVNTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSLSELQVLVDQGAIQKHSSVFRKYDQVWIPVTS 1137
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: A0A067DMR6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g000067mg PE=4 SV=1) HSP 1 Score: 237.654 bits (605), Expect = 1.639e-68 Identity = 125/175 (71.43%), Postives = 148/175 (84.57%), Query Frame = -1 Query: 6 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWK-VAPINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVT 527 LPPWA++ +ERND + SRS Q K +AVRGVKGTMLPVVRINACVV D GSFVS PR+K R KERH SRS+RS+S+ +DV++SSAESDS SKA N+Q +GSWK +A INTPKD +CTVD+LQL LGEWYYLDGAGHERGPSSFSELQ LVDQG I K++S FRK+D++WVP+T Sbjct: 90 LPPWAYACPDERNDGSGGSRSTQSKLAAVRGVKGTMLPVVRINACVVNDHGSFVSEPRSKVRAKERHSSRSARSYSSANDVRRSSAESDSHSKARNNQDSQGSWKSIACINTPKDRLCTVDDLQLQLGEWYYLDGAGHERGPSSFSELQVLVDQGCIQKHTSVFRKFDKVWVPLT 264
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: A0A067DAN1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g000067mg PE=4 SV=1) HSP 1 Score: 237.654 bits (605), Expect = 2.293e-68 Identity = 125/175 (71.43%), Postives = 148/175 (84.57%), Query Frame = -1 Query: 6 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWK-VAPINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVT 527 LPPWA++ +ERND + SRS Q K +AVRGVKGTMLPVVRINACVV D GSFVS PR+K R KERH SRS+RS+S+ +DV++SSAESDS SKA N+Q +GSWK +A INTPKD +CTVD+LQL LGEWYYLDGAGHERGPSSFSELQ LVDQG I K++S FRK+D++WVP+T Sbjct: 917 LPPWAYACPDERNDGSGGSRSTQSKLAAVRGVKGTMLPVVRINACVVNDHGSFVSEPRSKVRAKERHSSRSARSYSSANDVRRSSAESDSHSKARNNQDSQGSWKSIACINTPKDRLCTVDDLQLQLGEWYYLDGAGHERGPSSFSELQVLVDQGCIQKHTSVFRKFDKVWVPLT 1091
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: A0A067DA80_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g000067mg PE=4 SV=1) HSP 1 Score: 237.269 bits (604), Expect = 2.347e-68 Identity = 125/175 (71.43%), Postives = 148/175 (84.57%), Query Frame = -1 Query: 6 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWK-VAPINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVT 527 LPPWA++ +ERND + SRS Q K +AVRGVKGTMLPVVRINACVV D GSFVS PR+K R KERH SRS+RS+S+ +DV++SSAESDS SKA N+Q +GSWK +A INTPKD +CTVD+LQL LGEWYYLDGAGHERGPSSFSELQ LVDQG I K++S FRK+D++WVP+T Sbjct: 250 LPPWAYACPDERNDGSGGSRSTQSKLAAVRGVKGTMLPVVRINACVVNDHGSFVSEPRSKVRAKERHSSRSARSYSSANDVRRSSAESDSHSKARNNQDSQGSWKSIACINTPKDRLCTVDDLQLQLGEWYYLDGAGHERGPSSFSELQVLVDQGCIQKHTSVFRKFDKVWVPLT 424
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: A0A067DLL2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g000067mg PE=4 SV=1) HSP 1 Score: 237.654 bits (605), Expect = 2.434e-68 Identity = 125/175 (71.43%), Postives = 148/175 (84.57%), Query Frame = -1 Query: 6 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWK-VAPINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVT 527 LPPWA++ +ERND + SRS Q K +AVRGVKGTMLPVVRINACVV D GSFVS PR+K R KERH SRS+RS+S+ +DV++SSAESDS SKA N+Q +GSWK +A INTPKD +CTVD+LQL LGEWYYLDGAGHERGPSSFSELQ LVDQG I K++S FRK+D++WVP+T Sbjct: 868 LPPWAYACPDERNDGSGGSRSTQSKLAAVRGVKGTMLPVVRINACVVNDHGSFVSEPRSKVRAKERHSSRSARSYSSANDVRRSSAESDSHSKARNNQDSQGSWKSIACINTPKDRLCTVDDLQLQLGEWYYLDGAGHERGPSSFSELQVLVDQGCIQKHTSVFRKFDKVWVPLT 1042
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy Swiss-Prot
Match: ATXR3_ARATH (Histone-lysine N-methyltransferase ATXR3 OS=Arabidopsis thaliana GN=ATXR3 PE=2 SV=2) HSP 1 Score: 157.532 bits (397), Expect = 2.116e-42 Identity = 89/176 (50.57%), Postives = 113/176 (64.20%), Query Frame = -1 Query: 3 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWKV-APINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVTS 527 LP WAFS+ +ERN RGVK ++L VVR+N+ VV DQ + PR K R KER SR +R +SD K+ S ES S S A Q +G WK +NTP+D +CTVD+LQLH+G+W+Y DGAG E+GP SFSELQ LV++G I +SS FRK D++WVPVTS Sbjct: 868 LPLWAFSVVDERN--------------QTRGVKASLLSVVRLNSLVVNDQVPPIPDPRAKVRSKERCPSRPARPSPASSDSKRESVESHSQSTASTGQDSQGLWKTDTSVNTPRDRLCTVDDLQLHIGDWFYTDGAGQEQGPLSFSELQKLVEKGFIKSHSSVFRKSDKIWVPVTS 1029 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0001303 ID=g.arboreum_cottongen_reftransV1_0001303; Name=g.arboreum_cottongen_reftransV1_0001303; organism=Gossypium arboreum; type=contig; length=527bpback to top |