g.arboreum_cottongen_reftransV1_0001303, g.arboreum_cottongen_reftransV1_0001303 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: F6HIM5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g02740 PE=4 SV=1) HSP 1 Score: 198.749 bits (504), Expect = 8.882e-55 Identity = 112/176 (63.64%), Postives = 139/176 (78.98%), Query Frame = -1 Query: 3 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWK-VAPINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVTS 527 LP WAFS +ER+D N SR++QIKP VRGVKG+MLPVVRINACV S P K R K+R+ SRS+R++S+T+DVK+SSAES S SK+V++ +GSWK + INTPKD +CT ++LQLHLG+WYYLDGAGHE+GPSSFSELQ LVDQG I K+SS FRK D++WVP+TS Sbjct: 835 LPIWAFSWPDERSDSNSASRASQIKP-VVRGVKGSMLPVVRINACV--------SEPPAKVRGKDRYSSRSARAYSSTTDVKRSSAESASHSKSVSENDSQGSWKCITSINTPKDRLCTAEDLQLHLGDWYYLDGAGHEQGPSSFSELQALVDQGSIQKHSSVFRKNDKIWVPITS 1001
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: A0A059DGD7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01739 PE=4 SV=1) HSP 1 Score: 198.749 bits (504), Expect = 9.069e-55 Identity = 112/175 (64.00%), Postives = 141/175 (80.57%), Query Frame = -1 Query: 6 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWK-VAPINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVT 527 LPPWAF+ +ER++ ND++ Q+KP+ +RGVKGTML VVRINACVV+DQGSFVS PR K R KERH SRS+RSHS++SD K+SS E+DS S+ V++ +G K + INTPKD VCTV +LQLHLG+WYY DGAG E GPSS+SELQ LVD+G I KY+S FRK+D++WVP+T Sbjct: 929 LPPWAFNWPDERSE-NDLASRLQVKPAMMRGVKGTMLSVVRINACVVRDQGSFVSEPRMKARTKERHSSRSARSHSSSSDAKRSSVETDSRSRFVDEHSSRGLRKSIVTINTPKDRVCTVHDLQLHLGDWYYFDGAGQEHGPSSYSELQELVDRGTIQKYTSVFRKFDKLWVPLT 1102
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: A0A059DFY2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01739 PE=4 SV=1) HSP 1 Score: 198.749 bits (504), Expect = 9.164e-55 Identity = 112/175 (64.00%), Postives = 141/175 (80.57%), Query Frame = -1 Query: 6 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWK-VAPINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVT 527 LPPWAF+ +ER++ ND++ Q+KP+ +RGVKGTML VVRINACVV+DQGSFVS PR K R KERH SRS+RSHS++SD K+SS E+DS S+ V++ +G K + INTPKD VCTV +LQLHLG+WYY DGAG E GPSS+SELQ LVD+G I KY+S FRK+D++WVP+T Sbjct: 929 LPPWAFNWPDERSE-NDLASRLQVKPAMMRGVKGTMLSVVRINACVVRDQGSFVSEPRMKARTKERHSSRSARSHSSSSDAKRSSVETDSRSRFVDEHSSRGLRKSIVTINTPKDRVCTVHDLQLHLGDWYYFDGAGQEHGPSSYSELQELVDRGTIQKYTSVFRKFDKLWVPLT 1102
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: I1M406_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2) HSP 1 Score: 196.823 bits (499), Expect = 4.229e-54 Identity = 115/176 (65.34%), Postives = 139/176 (78.98%), Query Frame = -1 Query: 3 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWKVAP-INTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVTS 527 LP WAF A+ER+DC+ S+S Q KP++VRGVKG +L VVRINACVV+DQGS VS R KTRVKERH SR +R S+ SD K+SS E D SKAV+DQ S+++ INTPKDH CT+ ELQLHLG+WYYLDG+G ERGPSSFSELQ+ VDQG+I K+SS FRK D++WVP+TS Sbjct: 871 LPLWAF-CADERDDCSVASKSVQSKPASVRGVKGNVLSVVRINACVVKDQGSLVSESRHKTRVKERHHSRPARPFSSISDSKRSSTEQDQ-SKAVSDQ---VSYQILEFINTPKDHRCTIRELQLHLGDWYYLDGSGRERGPSSFSELQYFVDQGIIKKHSSVFRKSDKLWVPITS 1041
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: B9HE57_POPTR (SET domain-containing family protein OS=Populus trichocarpa GN=POPTR_0007s02850g PE=4 SV=2) HSP 1 Score: 195.667 bits (496), Expect = 9.779e-54 Identity = 107/170 (62.94%), Postives = 129/170 (75.88%), Query Frame = -1 Query: 3 SIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWK-VAPINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVTS 509 ++ ++RND +SRS KP RGVKGT+LPVVRINACVVQD VS RTK R K+R+ SRS+R+HS T+DVK SS E DS S+ VNDQ G WK A +NTPKD +CT D+LQL+LG+WYYLDG+GHERGP SFSELQ L D+G I KYSS FRK+D++WVPV S Sbjct: 863 TVGDDRNDTGGVSRSTLNKPPITRGVKGTVLPVVRINACVVQDH--VVSETRTKVRGKDRYHSRSARTHSATNDVKSSSVECDSQSRVVNDQDSHGCWKSTASLNTPKDRLCTADDLQLNLGDWYYLDGSGHERGPLSFSELQNLADKGTIQKYSSVFRKFDRVWVPVAS 1030
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy Swiss-Prot
Match: ATXR3_ARATH (Histone-lysine N-methyltransferase ATXR3 OS=Arabidopsis thaliana GN=ATXR3 PE=2 SV=2) HSP 1 Score: 157.532 bits (397), Expect = 2.116e-42 Identity = 89/176 (50.57%), Postives = 113/176 (64.20%), Query Frame = -1 Query: 3 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWKV-APINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVTS 527 LP WAFS+ +ERN RGVK ++L VVR+N+ VV DQ + PR K R KER SR +R +SD K+ S ES S S A Q +G WK +NTP+D +CTVD+LQLH+G+W+Y DGAG E+GP SFSELQ LV++G I +SS FRK D++WVPVTS Sbjct: 868 LPLWAFSVVDERN--------------QTRGVKASLLSVVRLNSLVVNDQVPPIPDPRAKVRSKERCPSRPARPSPASSDSKRESVESHSQSTASTGQDSQGLWKTDTSVNTPRDRLCTVDDLQLHIGDWFYTDGAGQEQGPLSFSELQKLVEKGFIKSHSSVFRKSDKIWVPVTS 1029 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0001303 ID=g.arboreum_cottongen_reftransV1_0001303; Name=g.arboreum_cottongen_reftransV1_0001303; organism=Gossypium arboreum; type=contig; length=527bpback to top |