g.arboreum_cottongen_reftransV1_0001303, g.arboreum_cottongen_reftransV1_0001303 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0001303
Unique Nameg.arboreum_cottongen_reftransV1_0001303
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length527
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr5chromosomeg.arboreum_cottongen_reftransV1_0001303:1..527 .
Chr5:9702481..9703007 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: V4W3Z4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10014009mg PE=4 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.055e-67
Identity = 124/175 (70.86%), Postives = 147/175 (84.00%), Query Frame = -1
Query:    6 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWK-VAPINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVT 527
            LPPWA++  +ERND +  SRS Q K + VRGVKGTMLPVVRINACVV D GSFVS PR+K R KERH SRS+RS+S+ +DV++SSAESDS SKA N+Q  +GSWK +A INTPKD +CTVD+LQL LGEWYYLDGAGHERGPSSFSELQ LVDQG I K++S FRK+D++WVP+T
Sbjct:  917 LPPWAYACPDERNDGSGGSRSTQSKLATVRGVKGTMLPVVRINACVVNDHGSFVSEPRSKVRAKERHSSRSARSYSSANDVRRSSAESDSHSKARNNQDSQGSWKSIACINTPKDRLCTVDDLQLQLGEWYYLDGAGHERGPSSFSELQVLVDQGCIQKHTSVFRKFDKVWVPLT 1091          
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: B9RPN1_RICCO (Huntingtin interacting protein, putative OS=Ricinus communis GN=RCOM_1546600 PE=4 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 9.077e-64
Identity = 118/175 (67.43%), Postives = 138/175 (78.86%), Query Frame = -1
Query:    6 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWK-VAPINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVT 527
            LPPWAFS  +ERN+C   SR+   KPS VRGVKGTMLPVVRINACVV+D GSFVS PR K R KER+ SRSSR +S  +DVK+ +AE DS SK   DQ    SWK ++ +NTPKD +CTVD+LQLHLGEWYYLDG+GHE+GPSSFSELQ L  QG I K+SS FRK+D++WVPVT
Sbjct:  955 LPPWAFSCTDERNECGSASRTTLAKPSVVRGVKGTMLPVVRINACVVKDHGSFVSEPRIKVRGKERYPSRSSRMYSAANDVKRLTAEGDSQSKI--DQDSHSSWKSISFVNTPKDRLCTVDDLQLHLGEWYYLDGSGHEQGPSSFSELQVLASQGAIKKWSSVFRKFDRVWVPVT 1127          
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: W9SAQ6_9ROSA (Putative histone-lysine N-methyltransferase OS=Morus notabilis GN=L484_018296 PE=4 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 6.185e-63
Identity = 121/176 (68.75%), Postives = 141/176 (80.11%), Query Frame = -1
Query:    3 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWKV-APINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVTS 527
            LP WAFS  +E+ D + +SRS Q KP  VRGVKGTML VVRINACVV+D GSFVS PRTK R KER+ SR++RS+S +SD K+SSAE D  SK+ ++Q L GSWK  A INTPKD +CTVD+L LHLGEWYYLDGAGHE+GPSSFSELQ L DQ  IPK SS FRK+D++WVPVTS
Sbjct:  875 LPLWAFSTPDEKCDSSGMSRSTQNKPPIVRGVKGTMLSVVRINACVVKDHGSFVSEPRTKVRGKERYSSRATRSYSASSDGKRSSAEGDIQSKSGSEQGLPGSWKSSAFINTPKDRICTVDDLLLHLGEWYYLDGAGHEQGPSSFSELQALADQETIPKGSSVFRKFDRVWVPVTS 1050          
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: U5FKP0_POPTR (SET domain-containing family protein OS=Populus trichocarpa GN=POPTR_0017s06870g PE=4 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 7.964e-61
Identity = 117/176 (66.48%), Postives = 137/176 (77.84%), Query Frame = -1
Query:    3 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWK-VAPINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVTS 527
            LPPWAFS  +ERND   +S+S   KP   RGVKGT+LPVVRINACVVQD    VS  RTK R K+R+ SR++R+HS T+DVK+SS ESDS SK VND    G WK  AP+NTPKD +CT D+LQL+LGEWYYLDGAGHE+GPSSFSELQ L D G I KYSS FRK+D++WVP+TS
Sbjct:  982 LPPWAFSSTDERNDTGGVSKSTLNKPPITRGVKGTVLPVVRINACVVQDH---VSETRTKVRGKDRYHSRAARTHSATNDVKRSSVESDSQSKVVNDPDSHGCWKSTAPLNTPKDCLCTADDLQLNLGEWYYLDGAGHEQGPSSFSELQNLADIGTIQKYSSVFRKFDRVWVPITS 1154          
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: I1LU88_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 1.410e-59
Identity = 121/176 (68.75%), Postives = 146/176 (82.95%), Query Frame = -1
Query:    3 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWKVAP-INTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVTS 527
            LP WAF  A+ER+DC+  S+S Q KP++VRGVKG +L VVRINACVV+DQGS VS  R KTRVKERH SRS+R  S+TSD K+SS E DSLSKAV+DQ   GS+++   INTPKDH+CT+ ELQLHLG+WYYLDG+G ERGPSSFSELQ+LVDQG+I K+SS FRK D++WVP+TS
Sbjct:  860 LPLWAF-CADERDDCSVASKSVQSKPASVRGVKGNVLSVVRINACVVKDQGSLVSESRHKTRVKERHHSRSTRPFSSTSDSKRSSTEQDSLSKAVSDQ---GSYQIVEFINTPKDHLCTIRELQLHLGDWYYLDGSGRERGPSSFSELQYLVDQGIIKKHSSVFRKSDKLWVPITS 1031          
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: A0A0B2QVW7_GLYSO (Putative histone-lysine N-methyltransferase ATXR3 OS=Glycine soja GN=glysoja_040636 PE=4 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.465e-59
Identity = 121/176 (68.75%), Postives = 146/176 (82.95%), Query Frame = -1
Query:    3 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWKVAP-INTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVTS 527
            LP WAF  A+ER+DC+  S+S Q KP++VRGVKG +L VVRINACVV+DQGS VS  R KTRVKERH SRS+R  S+TSD K+SS E DSLSKAV+DQ   GS+++   INTPKDH+CT+ ELQLHLG+WYYLDG+G ERGPSSFSELQ+LVDQG+I K+SS FRK D++WVP+TS
Sbjct:  860 LPLWAF-CADERDDCSVASKSVQSKPASVRGVKGNVLSVVRINACVVKDQGSLVSESRHKTRVKERHHSRSTRPFSSTSDSKRSSTEQDSLSKAVSDQ---GSYQIVEFINTPKDHLCTIRELQLHLGDWYYLDGSGRERGPSSFSELQYLVDQGIIKKHSSVFRKSDKLWVPITS 1031          
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: A0A067K671_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20287 PE=4 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.590e-58
Identity = 108/176 (61.36%), Postives = 130/176 (73.86%), Query Frame = -1
Query:    3 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWK-VAPINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVTS 527
            LPPWAFS  +ERN+C  ++R+   KPS VRGVKGTMLPVVRINACVV+D GS VS  RTK R KER+ SR         D+K+ + E +   K   DQ   GSWK ++ INTPKD +CT D+L+LHLGEWYYLDG+GHE+GP SFSELQ L DQG I K SSAFRK+D++WVPVT+
Sbjct:  941 LPPWAFSCTDERNECGGVNRTTVAKPSTVRGVKGTMLPVVRINACVVKDHGSLVSESRTKARGKERYTSRLRVYSGAN-DLKRLTPEGNFQFKT--DQDSLGSWKSISSINTPKDRLCTADDLRLHLGEWYYLDGSGHEQGPLSFSELQLLADQGSIQKCSSAFRKFDRVWVPVTT 1113          
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: M5WYN5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000055mg PE=4 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.367e-58
Identity = 110/170 (64.71%), Postives = 136/170 (80.00%), Query Frame = -1
Query:    3 SIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWK-VAPINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVTS 509
            ++ +E +DC+ +SR+ QIK + ++GVKGTMLPVVRINACVV+D GSFVS PR K R  ER+ SRS+RS+S  SD K+SS E DS  K V+D+  +GS K +  IN  KD VCTVD+LQLHLG+WYYLDGAGHERGPSSFSELQ LVDQGVI  +SS FRK+D++WVPV+S
Sbjct:  560 AVGDEMSDCSGVSRTTQIKTTVIKGVKGTMLPVVRINACVVKDHGSFVSEPRMKVRGMERYTSRSARSYSAGSDGKRSSGEGDSQLKPVSDRGSQGSLKCITSINISKDRVCTVDDLQLHLGDWYYLDGAGHERGPSSFSELQVLVDQGVILNHSSVFRKFDKVWVPVSS 729          
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: V7BVF0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G112000g PE=4 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 6.151e-58
Identity = 115/176 (65.34%), Postives = 139/176 (78.98%), Query Frame = -1
Query:    3 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWKVAP-INTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVTS 527
            LP WAFS A+ER++C+   RS Q KP +VRGVKG +L VVRINACVV+DQGS VS  R KTR KERH SRSSR  S TSD K+SS + DS  KA +DQ   GS+K+   +NTPKDH+CT+ ELQLHLG+WYY DG+G ERGPSSFSELQ+LVDQG+I ++SS FRK D++WVP+TS
Sbjct:  881 LPLWAFS-ADERDECSVAGRSVQSKPVSVRGVKGNVLSVVRINACVVKDQGSLVSESRHKTRGKERHHSRSSRPFSATSDSKRSSTDHDSQLKAFSDQ---GSYKIMEFLNTPKDHLCTIHELQLHLGDWYYFDGSGRERGPSSFSELQYLVDQGIIKRHSSVFRKSDKLWVPITS 1052          
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Match: K4CFJ2_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc07g052940.2 PE=4 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 5.803e-56
Identity = 110/176 (62.50%), Postives = 130/176 (73.86%), Query Frame = -1
Query:    3 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWK-VAPINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVTS 527
            LP WAF+  +E ND N + R NQ KP  +RG KG MLPV+RINACVV++ GSFVS P TK R K+RH  RSSR +  T D K+SS E+   SK+  DQ L GS K + P+  PKD +C+ DELQLHLGEWYYLDGAGHERGP SF ELQ LVDQGVIP+ SSAFR+ D++WVPV S
Sbjct:  917 LPSWAFT-PDEWNDSNVVGRPNQSKPPVLRGTKGMMLPVIRINACVVKEHGSFVSEPHTKVRGKDRHPQRSSRPYVVTGDTKRSSEEAVYRSKSRQDQELHGSSKSIMPLIIPKDRLCSADELQLHLGEWYYLDGAGHERGPFSFIELQVLVDQGVIPENSSAFRRVDRIWVPVAS 1091          
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy Swiss-Prot
Match: ATXR3_ARATH (Histone-lysine N-methyltransferase ATXR3 OS=Arabidopsis thaliana GN=ATXR3 PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 2.116e-42
Identity = 89/176 (50.57%), Postives = 113/176 (64.20%), Query Frame = -1
Query:    3 LPPWAFSIAEERNDCNDISRSNQIKPSAVRGVKGTMLPVVRINACVVQDQGSFVSAPRTKTRVKEXXXXXXXXXXXXXSDVKKSSAESDSLSKAVNDQRLKGSWKV-APINTPKDHVCTVDELQLHLGEWYYLDGAGHERGPSSFSELQFLVDQGVIPKYSSAFRKYDQMWVPVTS 527
            LP WAFS+ +ERN                RGVK ++L VVR+N+ VV DQ   +  PR K R KER  SR +R    +SD K+ S ES S S A   Q  +G WK    +NTP+D +CTVD+LQLH+G+W+Y DGAG E+GP SFSELQ LV++G I  +SS FRK D++WVPVTS
Sbjct:  868 LPLWAFSVVDERN--------------QTRGVKASLLSVVRLNSLVVNDQVPPIPDPRAKVRSKERCPSRPARPSPASSDSKRESVESHSQSTASTGQDSQGLWKTDTSVNTPRDRLCTVDDLQLHIGDWFYTDGAGQEQGPLSFSELQKLVEKGFIKSHSSVFRKSDKIWVPVTS 1029          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
V4W3Z4_9ROSI1.055e-6770.86Uncharacterized protein OS=Citrus clementina GN=CI... [more]
B9RPN1_RICCO9.077e-6467.43Huntingtin interacting protein, putative OS=Ricinu... [more]
W9SAQ6_9ROSA6.185e-6368.75Putative histone-lysine N-methyltransferase OS=Mor... [more]
U5FKP0_POPTR7.964e-6166.48SET domain-containing family protein OS=Populus tr... [more]
I1LU88_SOYBN1.410e-5968.75Uncharacterized protein OS=Glycine max PE=4 SV=2[more]
A0A0B2QVW7_GLYSO1.465e-5968.75Putative histone-lysine N-methyltransferase ATXR3 ... [more]
A0A067K671_JATCU1.590e-5861.36Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
M5WYN5_PRUPE2.367e-5864.71Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
V7BVF0_PHAVU6.151e-5865.34Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
K4CFJ2_SOLLC5.803e-5662.50Uncharacterized protein OS=Solanum lycopersicum GN... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0001303 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATXR3_ARATH2.116e-4250.57Histone-lysine N-methyltransferase ATXR3 OS=Arabid... [more]
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Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0001303 ID=g.arboreum_cottongen_reftransV1_0001303; Name=g.arboreum_cottongen_reftransV1_0001303; organism=Gossypium arboreum; type=contig; length=527bp
GCGGAGGTGACTGGAACCCACATTTGATCATATTTACGAAAAGCACTGCT
ATATTTCGGGATAACTCCTTGATCTACCAAAAACTGAAGTTCAGAGAATG
ATGAAGGTCCCCTTTCATGCCCAGCACCATCAAGGTAGTACCATTCACCC
AAGTGTAACTGCAACTCATCAACAGTACAAACATGGTCTTTAGGAGTATT
AATGGGTGCAACCTTCCATGATCCTTTCAAGCGTTGATCATTAACAGCCT
TTGATAGTGAATCACTTTCTGCCGATGATTTCTTGACATCACTAGTTGTC
GAGTGTGACCGGGAAGATCTTGAACAGTGTCTCTCCTTCACTCGAGTTTT
TGTGCGAGGTGCAGATACAAATGAACCCTGATCCTGAACCACACATGCAT
TTATCCGGACTACTGGAAGCATGGTTCCCTTCACTCCTCTCACAGCAGAA
GGCTTAATTTGATTCGATCTACTAATATCATTGCAATCATTTCTCTCTTC
AGCAATTGAGAAGGCCCAAGGAGGGAG
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