g.arboreum_cottongen_reftransV1_0006676, g.arboreum_cottongen_reftransV1_0006676 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0006676
Unique Nameg.arboreum_cottongen_reftransV1_0006676
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length589
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr1chromosomeg.arboreum_cottongen_reftransV1_0006676:1..589 .
Chr1:49536637..49537643 -
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy TrEMBL
Match: A0A072VEN0_MEDTR (Serine/Threonine kinase family protein OS=Medicago truncatula GN=MTR_1g013040 PE=4 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.386e-23
Identity = 69/134 (51.49%), Postives = 89/134 (66.42%), Query Frame = 1 
Query:  187 GEEHKKMDPTKKMXXXXXXXXXXXXXXXXXXFCLWIYYRXXXXXXXXXXXXXXDGEKGNGLAPYLGKLKSMRTVSKEGYASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588
            G+EH+ MD   K ++A + A + LGAII  L   WI+Y K SSKS K   ++SDGEKG GL P+L K  S++ V K+G    +DYK LEKAT  F   NI+GEGGFGCVYKA+ +D    A+KKL+C  Q AE+
Sbjct:   64 GDEHQNMDSHMKKVMAFVAASTGLGAIILCLLSFWIFYIKYSSKSKKKNLQNSDGEKGLGLVPFLSKFSSVKMVGKKGCVPIIDYKQLEKATGNFKESNIIGEGGFGCVYKARLDDNLDVAIKKLNCECQYAER 197
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy TrEMBL
Match: A0A072VCZ2_MEDTR (Serine/Threonine kinase family protein OS=Medicago truncatula GN=MTR_1g013040 PE=4 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.778e-23
Identity = 69/134 (51.49%), Postives = 89/134 (66.42%), Query Frame = 1 
Query:  187 GEEHKKMDPTKKMXXXXXXXXXXXXXXXXXXFCLWIYYRXXXXXXXXXXXXXXDGEKGNGLAPYLGKLKSMRTVSKEGYASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588
            G+EH+ MD   K ++A + A + LGAII  L   WI+Y K SSKS K   ++SDGEKG GL P+L K  S++ V K+G    +DYK LEKAT  F   NI+GEGGFGCVYKA+ +D    A+KKL+C  Q AE+
Sbjct:   64 GDEHQNMDSHMKKVMAFVAASTGLGAIILCLLSFWIFYIKYSSKSKKKNLQNSDGEKGLGLVPFLSKFSSVKMVGKKGCVPIIDYKQLEKATGNFKESNIIGEGGFGCVYKARLDDNLDVAIKKLNCECQYAER 197
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BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy TrEMBL
Match: F6HX98_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g06160 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.697e-23
Identity = 46/81 (56.79%), Postives = 58/81 (71.60%), Query Frame = 1 
Query:  346 DGEKGNGLAPYLGKLKSMRTVSKEGYASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588
            D EK   L P L K  +M+ + ++GY SF+DYK+LE ATN F   NILGEGGFGCVYKA+ +D S+ AVKK+D   QDAE+
Sbjct:   17 DAEKALTLGPLLAKFNTMKVIGRKGYVSFIDYKVLETATNNFQESNILGEGGFGCVYKARLDDNSHVAVKKVDGRGQDAER 97
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BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy TrEMBL
Match: A0A072UIF8_MEDTR (Receptor-like kinase OS=Medicago truncatula GN=MTR_4g014900 PE=4 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 7.536e-23
Identity = 69/134 (51.49%), Postives = 88/134 (65.67%), Query Frame = 1 
Query:  187 GEEHKKMDPTKKMXXXXXXXXXXXXXXXXXXFCLWIYYRXXXXXXXXXXXXXXDGEKGNGLAPYLGKLKSMRTVSKEGYASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588
            G+EH+ MD   K ++A + A + LGAII  L   WI+Y K SSKS K   ++SDGEKG  L P+L K  S+R V K+G    +DYK LEKAT  F   NI+GEGGFGCVYKA+ +D    A+KKL+C  Q AE+
Sbjct:   69 GDEHQNMDSHMKKVMAFVAASTGLGAIILCLLSFWIFYIKYSSKSKKKNLQNSDGEKGLRLVPFLSKFSSVRLVGKKGCVPIIDYKQLEKATGNFKESNIIGEGGFGCVYKARLDDNLDVAIKKLNCECQYAER 202
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy TrEMBL
Match: A0A072UGR9_MEDTR (Receptor-like kinase OS=Medicago truncatula GN=MTR_4g014900 PE=4 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.183e-22
Identity = 69/134 (51.49%), Postives = 88/134 (65.67%), Query Frame = 1 
Query:  187 GEEHKKMDPTKKMXXXXXXXXXXXXXXXXXXFCLWIYYRXXXXXXXXXXXXXXDGEKGNGLAPYLGKLKSMRTVSKEGYASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588
            G+EH+ MD   K ++A + A + LGAII  L   WI+Y K SSKS K   ++SDGEKG  L P+L K  S+R V K+G    +DYK LEKAT  F   NI+GEGGFGCVYKA+ +D    A+KKL+C  Q AE+
Sbjct:   69 GDEHQNMDSHMKKVMAFVAASTGLGAIILCLLSFWIFYIKYSSKSKKKNLQNSDGEKGLRLVPFLSKFSSVRLVGKKGCVPIIDYKQLEKATGNFKESNIIGEGGFGCVYKARLDDNLDVAIKKLNCECQYAER 202
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Match: Y1864_ARATH (Probable receptor-like protein kinase At1g80640 OS=Arabidopsis thaliana GN=At1g80640 PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 1.039e-8
Identity = 29/73 (39.73%), Postives = 41/73 (56.16%), Query Frame = 1 
Query:  346 DGEKGNGLAPYLGKLKSMRTVSKEGYASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLD 564
            D  K     P + K+ S+R    +G     +Y++LE ATNKF   N+L  GG GC+Y+A  ++ S   VKKLD
Sbjct:  112 DSVKSVTTKPTVHKIDSVR----KGTIPVYEYQLLESATNKFSDSNVLSRGGRGCLYRACLDEKSSVTVKKLD 180
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Match: Y1497_ARATH (Probable receptor-like protein kinase At1g49730 OS=Arabidopsis thaliana GN=At1g49730 PE=2 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 1.085e-8
Identity = 27/50 (54.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:  439 YKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588
            YK +  ATN F+   ++G+GGFG VYKA+FNDG  AAVKK++  S+ AE+
Sbjct:  319 YKEMTNATNDFN--TVIGQGGFGTVYKAEFNDGLIAAVKKMNKVSEQAEQ 366
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BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Match: PERK3_ARATH (Proline-rich receptor-like protein kinase PERK3 OS=Arabidopsis thaliana GN=PERK3 PE=2 SV=2)

HSP 1 Score: 55.8398 bits (133), Expect = 3.839e-8
Identity = 28/56 (50.00%), Postives = 34/56 (60.71%), Query Frame = 1 
Query:  421 YASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588
            + S   Y  L +ATNKF   N+LGEGGFG VYK   N+G+  AVK+L   S   EK
Sbjct:  167 HQSTFTYGELARATNKFSEANLLGEGGFGFVYKGILNNGNEVAVKQLKVGSAQGEK 222
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Match: PSKR2_ARATH (Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 4.197e-8
Identity = 28/48 (58.33%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:  448 LEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKL--DCASQDAE 585
            L K+TN F   NI+G GGFG VYKA F DGS AAVK+L  DC   + E
Sbjct:  747 LLKSTNNFSQANIIGCGGFGLVYKANFPDGSKAAVKRLSGDCGQMERE 794
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Match: TMK4_ARATH (Receptor-like kinase TMK4 OS=Arabidopsis thaliana GN=TMK4 PE=1 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 6.299e-8
Identity = 23/53 (43.40%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:  415 EGYASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCAS 573
            EG +  +  ++L + TN F   NILG GGFG VY  + +DG+  AVK+++CA+
Sbjct:  560 EGGSVTIPMEVLRQVTNNFSEDNILGRGGFGVVYAGELHDGTKTAVKRMECAA 612
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Match: CRK11_ARATH (Cysteine-rich receptor-like protein kinase 11 OS=Arabidopsis thaliana GN=CRK11 PE=2 SV=2)

HSP 1 Score: 55.0694 bits (131), Expect = 8.268e-8
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:  436 DYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKL 561
            D+K +E ATNKF   N LGEGGFG VYK + ++G+  AVK+L
Sbjct:  339 DFKTIEAATNKFSTSNKLGEGGFGAVYKGKLSNGTDVAVKRL 380
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Match: CRK15_ARATH (Cysteine-rich receptor-like protein kinase 15 OS=Arabidopsis thaliana GN=CRK15 PE=2 SV=2)

HSP 1 Score: 54.6842 bits (130), Expect = 9.854e-8
Identity = 23/47 (48.94%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:  433 MDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCAS 573
            +DY+++  ATNKF   N +G+GGFG VYK  F++G+  AVK+L  +S
Sbjct:  325 LDYRMIRAATNKFSENNKIGQGGFGEVYKGTFSNGTEVAVKRLSKSS 371
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Match: Y4345_ARATH (Probable receptor-like serine/threonine-protein kinase At4g34500 OS=Arabidopsis thaliana GN=At4g34500 PE=2 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 1.413e-7
Identity = 28/57 (49.12%), Postives = 35/57 (61.40%), Query Frame = 1 
Query:  418 GYASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCASQDAEK 588
            G+  +   K LE AT  F   N++GEGG+G VY+A F+DGS AAVK L      AEK
Sbjct:  128 GWGKWYSLKDLEIATRGFSDDNMIGEGGYGVVYRADFSDGSVAAVKNLLNNKGQAEK 184
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Match: NIK3_ARATH (Protein NSP-INTERACTING KINASE 3 OS=Arabidopsis thaliana GN=NIK3 PE=1 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 1.537e-7
Identity = 26/51 (50.98%), Postives = 32/51 (62.75%), Query Frame = 1 
Query:  418 GYASFMDYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKL-DC 567
            G+     +K L  ATN F+  NILG GG+G VYK   NDG+  AVK+L DC
Sbjct:  284 GHLKRYTFKELRSATNHFNSKNILGRGGYGIVYKGHLNDGTLVAVKRLKDC 334
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Match: CRK22_ARATH (Cysteine-rich receptor-like protein kinase 22 OS=Arabidopsis thaliana GN=CRK22 PE=2 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 1.720e-7
Identity = 27/52 (51.92%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:  436 DYKILEKATNKFHHGNILGEGGFGCVYKAQFNDGSYAAVKKLDCAS-QDAEK 588
            ++K +E ATNKF   N LGEG FG VYK +F++G+  AVK+L   S QD +K
Sbjct:  342 EFKTIEAATNKFSKSNKLGEGRFGEVYKGKFSNGTEVAVKRLSKVSGQDTKK 393
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A072VEN0_MEDTR4.386e-2351.49Serine/Threonine kinase family protein OS=Medicago... [more]
A0A072VCZ2_MEDTR4.778e-2351.49Serine/Threonine kinase family protein OS=Medicago... [more]
F6HX98_VITVI5.697e-2356.79Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A072UIF8_MEDTR7.536e-2351.49Receptor-like kinase OS=Medicago truncatula GN=MTR... [more]
A0A072UGR9_MEDTR1.183e-2251.49Receptor-like kinase OS=Medicago truncatula GN=MTR... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0006676 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
Y1864_ARATH1.039e-839.73Probable receptor-like protein kinase At1g80640 OS... [more]
Y1497_ARATH1.085e-854.00Probable receptor-like protein kinase At1g49730 OS... [more]
PERK3_ARATH3.839e-850.00Proline-rich receptor-like protein kinase PERK3 OS... [more]
PSKR2_ARATH4.197e-858.33Phytosulfokine receptor 2 OS=Arabidopsis thaliana ... [more]
TMK4_ARATH6.299e-843.40Receptor-like kinase TMK4 OS=Arabidopsis thaliana ... [more]
CRK11_ARATH8.268e-857.14Cysteine-rich receptor-like protein kinase 11 OS=A... [more]
CRK15_ARATH9.854e-848.94Cysteine-rich receptor-like protein kinase 15 OS=A... [more]
Y4345_ARATH1.413e-749.12Probable receptor-like serine/threonine-protein ki... [more]
NIK3_ARATH1.537e-750.98Protein NSP-INTERACTING KINASE 3 OS=Arabidopsis th... [more]
CRK22_ARATH1.720e-751.92Cysteine-rich receptor-like protein kinase 22 OS=A... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013320Concanavalin A-like lectin/glucanase domainGENE3D2.60.120.200coord: 59..167
e-value: 7.2E-10
score: 38.3
NoneNo IPR availableGENE3D3.30.200.20coord: 168..191
e-value: 6.2E-6
score: 25.9
NoneNo IPR availablePANTHERPTHR27001:SF62PROTEIN KINASE FAMILY PROTEIN-RELATEDcoord: 35..103
coord: 121..193
NoneNo IPR availablePANTHERPTHR27001FAMILY NOT NAMEDcoord: 35..103
coord: 121..193
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 98..193
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 24..31
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 72..97
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 12..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..31
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 32..71
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..31
score: 0.712
NoneNo IPR availableSIGNALP_GRAM_POSITIVESignalP-TMSignalP-TMcoord: 1..31
score: 0.477
NoneNo IPR availableTMHMMTMhelixcoord: 75..97
NoneNo IPR availableTMHMMTMhelixcoord: 12..34
IPR017441Protein kinase, ATP binding sitePROSITEPS00107PROTEIN_KINASE_ATPcoord: 160..183
IPR000719Protein kinase domainPROSITEPS50011PROTEIN_KINASE_DOMcoord: 154..193
score: 8.556
IPR011009Protein kinase-like domainSUPERFAMILY56112Protein kinase-like (PK-like)coord: 133..185

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0006676 ID=g.arboreum_cottongen_reftransV1_0006676; Name=g.arboreum_cottongen_reftransV1_0006676; organism=Gossypium arboreum; type=contig; length=589bp
AAAGAATCATTGTTTGAAAGAAACAAAGGGATGAAGAAGAAGCTTGTGCT
GCATCTGCTTCTTTTCCTTGTTTGTACTTTTGAAAACATTGTTGTTTTGG
CCGTACAAGGCCCTGCTTCATCACCCATTTCTACTCCCATCTCTACTTCA
ATGGCTGCCTTCTCTCCAGCTGGGATTCAACTTGGAGGTGAGGAGCACAA
GAAAATGGATCCAACCAAGAAAATGTTATTAGCTCTCATTCTTGCTGGCT
CTTCATTGGGTGCAATTATCTCTTCCTTGTTCTGTTTATGGATTTATTAC
AGGAAGAATTCAAGCAAATCCTCTAAAAATGGTGCTAAGAGCTCAGATGG
TGAAAAAGGGAATGGTTTGGCACCATATTTGGGTAAACTCAAGTCTATGA
GGACGGTTTCCAAAGAGGGTTATGCTTCGTTTATGGACTATAAGATACTT
GAAAAAGCTACAAACAAGTTCCATCATGGTAATATTCTGGGTGAGGGTGG
ATTTGGATGTGTTTACAAGGCTCAATTCAATGATGGTTCTTATGCTGCTG
TTAAGAAGTTGGACTGTGCAAGCCAAGATGCTGAAAAAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR013320ConA-like_dom_sf
IPR017441Protein_kinase_ATP_BS
IPR000719Prot_kinase_dom
IPR011009Kinase-like_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0004672protein kinase activity
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation