g.arboreum_cottongen_reftransV1_0011016, g.arboreum_cottongen_reftransV1_0011016 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0011016
Unique Nameg.arboreum_cottongen_reftransV1_0011016
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length2436
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr7chromosomeg.arboreum_cottongen_reftransV1_0011016:1..2436 .
Chr7:29256179..29258700 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0011016 vs. ExPASy TrEMBL
Match: W9S228_9ROSA (ABC transporter G family member 26 OS=Morus notabilis GN=L484_014860 PE=4 SV=1)

HSP 1 Score: 865.144 bits (2234), Expect = 0.000e+0
Identity = 461/636 (72.48%), Postives = 543/636 (85.38%), Query Frame = 3
Query:  129 WQDMFRSASVRKPSPAPGNSDXXXXXXXXXXXXX---XSTDPDHKNSLSGDPQVRLALYIAMAHAGLAFTIFILYAICKLLQEYFRPIQWAILCSIPLRGIQETLVGFWSEPLRLGLTETVLAVPVAVFKAFIGTLVDIKDVCLRVFLKRPKSNLSRRKRSGFPMLVRWLVAFAVFVIAYERXXXXXXXXXXXXXXXXSTKNIDDXXXXXXXXXXXXXXXXXXXAYFTTRILKRLDTIVAIGLIIGMFVGFFAGATFFSYKIGVEGKDAVVSVKSHVEESNYAERMGVKRWMEENDVPGMVDKYTTQFYETVSEQIDNLAMQYNMTEFVTGIKHFVIXXXXXXXXXXXALMTPSPYTEKFLSLRKRVSNREWGQIYTEVDAIFRELIITREDLVQKAKGFAVKGADVSQRVLASSASVLGGGAKIMFTIGNSILYGAAEVFNFVSQLMVFFWVLYYLITSESGGVTEQVMSMIPISKPARIRCVEVLDEAISGVLLATAEIAFFQGCLTWLMFRLFEIHFVYMSTVLAFISPLLPIFPPWFATIPAAIELVLESRYIVAVVFSISHIVLMDYGAAEIQESIPGYSAYLTGLSIIGGMTLFPSAVEGAIMGPLITTVVIALKDLYVEFVLEEPKKKD 2027
            WQDMFRSAS+RKPSP+P  +      P    +      + DPD K++LSGDPQVRLAL IAMAHAGLAF IF L+A+CKLL+EY RPIQWA+LCSIPLRGIQ+TLV FWSEPL LGLTETVLAVPVAVF+ F+GTLV++++VC+R+ L++PKS   RR  S F  L+RWLV+F +F+ AYE  G  GS+ ++ LGFV S   +D ++S VSS RS SF RSR+SA+FT  +LK+L TIVAIGLIIGM +G   G  FFSYKIGVEGKDAV+S+KSHVEESNYAE++GV++WM+END+PGMVDKY+TQ YETVSEQID+LAMQYNM+EFVTGIKHFVI    +SS  STAL+TPSPYTEK +SLR R+SNREWG+IYTEVD I RELII+REDLV+KAK +AVKG DVSQRVLASS ++LGGGAK +F+IGNSI+ GAAEVFNF+SQ MVFFWVLYYLITSESGGVTEQVMSM+PISK AR+RCVEVLD+AISGVLL+TAEIAF QGCLTWL+FRL++IHF+YM TV+A  S L PIFP WFA+IPAA++LVLE RYIVA+V SI H+VLMDYGA+EIQE IPG+SAYLTGLSIIGGMTLFPSA+EGAIMGPLITTVVIALKDLY EFVL+ PK+K+
Sbjct:  691 WQDMFRSASIRKPSPSPSPTPPTHAPPTGAREADSPPTAADPDQKSALSGDPQVRLALCIAMAHAGLAFAIFTLFAVCKLLEEYLRPIQWAVLCSIPLRGIQQTLVAFWSEPLGLGLTETVLAVPVAVFRVFVGTLVEVREVCVRIVLRKPKSGTPRRHISAFSKLIRWLVSFWIFIFAYESFGRFGSIALVGLGFVFSATTVDSTMSTVSSLRSISFPRSRISAFFTRGLLKKLKTIVAIGLIIGMILGLIIGVIFFSYKIGVEGKDAVISLKSHVEESNYAEKIGVRQWMDENDLPGMVDKYSTQLYETVSEQIDSLAMQYNMSEFVTGIKHFVIKQQGNSSAPSTALITPSPYTEKLVSLRNRISNREWGEIYTEVDVIVRELIISREDLVEKAKAYAVKGVDVSQRVLASSTTILGGGAKFVFSIGNSIISGAAEVFNFLSQSMVFFWVLYYLITSESGGVTEQVMSMVPISKSARVRCVEVLDQAISGVLLSTAEIAFVQGCLTWLLFRLYKIHFLYMCTVIAIASSLFPIFPSWFASIPAALQLVLEGRYIVAIVLSIIHLVLMDYGASEIQEDIPGHSAYLTGLSIIGGMTLFPSALEGAIMGPLITTVVIALKDLYAEFVLDGPKEKE 1326          
BLAST of g.arboreum_cottongen_reftransV1_0011016 vs. ExPASy TrEMBL
Match: R0GPI5_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10026059mg PE=4 SV=1)

HSP 1 Score: 863.603 bits (2230), Expect = 0.000e+0
Identity = 463/633 (73.14%), Postives = 529/633 (83.57%), Query Frame = 3
Query:  129 WQDMFRSASVRKPSPAPGNSDXXXXXXXXXXXXXXSTDPDHKNSLSG-DPQVRLALYIAMAHAGLAFTIFILYAICKLLQEYFRPIQWAILCSIPLRGIQETLVGFWSEPLRLGLTETVLAVPVAVFKAFIGTLVDIKDVCLRVFLKRPKSNLSRRKR-SGFPMLVRWLVAFAVFVIAYERXXXXXXXXXXXXXXXXSTKNIDDXXXXXXXXXXXXXXXXXXXAYFTTRILKRLDTIVAIGLIIGMFVGFFAGATFFSYKIGVEGKDAVVSVKSHVEESNYAERMGVKRWMEENDVPGMVDKYTTQFYETVSEQIDNLAMQYNMTEFVTGIKHFVIXXXXXXXXXXXALMTPSPYTEKFLSLRKRVSNREWGQIYTEVDAIFRELIITREDLVQKAKGFAVKGADVSQRVLASSASVLGGGAKIMFTIGNSILYGAAEVFNFVSQLMVFFWVLYYLITSESGGVTEQVMSMIPISKPARIRCVEVLDEAISGVLLATAEIAFFQGCLTWLMFRLFEIHFVYMSTVLAFISPLLPIFPPWFATIPAAIELVLESRYIVAVVFSISHIVLMDYGAAEIQESIPGYSAYLTGLSIIGGMTLFPSAVEGAIMGPLITTVVIALKDLYVEFVLEEPKK 2021
            WQ+MFRSAS RKP       D P +      +     D   K SLS  D Q RLA+YIAMAHAGL F I +LY + +LLQEY RPIQWAILCSIPLRGIQETLV FWSEPL+LGLTE VLAVPV+VF  FIG++VDIK+VC RVFL+R K   +R+K  +GF  LV+WLV+F VFVIAYERIGG+GSL I+ LGF+ S+KN+D SLSAVSS RSNSFRRS  +AYFT  I+ RL+TIVAIGLI+ M VG   G  FFSYKIGVEGKDAV S+KSHVEESNYAE++G+K+WM+ENDVPGMVD YTT+FYETVSEQID+LAMQYNMTE VTGIKHFVI    ++S  STAL+ PSPYTEK +SLR RV N+EW QIY+EVD IFRELIITREDLV+KAKGFAVKG DVSQRV +SSASV+GGGAK + +IG SI++GA E FNFVSQLMVF WVLY LITSESGGVTEQVM+M+PIS  AR RCVEVLD AISGVLLATAE+AFFQGCLTWL+FRL+ IHF+YMSTVLAFIS LLPIFP WFATIPAA++LVLE RYIVAV  S++H+VLM+YGA+EIQ+ IPG +AYLTGLSIIGG+TLFPSA+EGAIMGPLITTVVIALKDLY EFVL +PKK
Sbjct:   20 WQEMFRSASSRKPQ------DPPSSSSSTSSEPKPPCD-GGKTSLSAVDSQARLAIYIAMAHAGLVFAICVLYFVGRLLQEYLRPIQWAILCSIPLRGIQETLVDFWSEPLKLGLTEVVLAVPVSVFNVFIGSIVDIKNVCFRVFLRRSKPKRTRKKSDTGFSKLVKWLVSFGVFVIAYERIGGIGSLVILSLGFLFSSKNVDSSLSAVSSLRSNSFRRSHFTAYFTRGIMTRLNTIVAIGLIVLMIVGSLTGVIFFSYKIGVEGKDAVYSLKSHVEESNYAEKIGIKQWMDENDVPGMVDMYTTKFYETVSEQIDSLAMQYNMTELVTGIKHFVIGHPQNTSTPSTALIAPSPYTEKLMSLRTRVKNKEWSQIYSEVDVIFRELIITREDLVEKAKGFAVKGMDVSQRVFSSSASVVGGGAKFVLSIGTSIIWGATEFFNFVSQLMVFIWVLYVLITSESGGVTEQVMNMLPISPSARNRCVEVLDLAISGVLLATAELAFFQGCLTWLLFRLYNIHFLYMSTVLAFISALLPIFPYWFATIPAALQLVLEGRYIVAVTLSVTHLVLMEYGASEIQDDIPGSNAYLTGLSIIGGVTLFPSALEGAIMGPLITTVVIALKDLYAEFVLNDPKK 645          
BLAST of g.arboreum_cottongen_reftransV1_0011016 vs. ExPASy TrEMBL
Match: Q9FG69_ARATH (Putative uncharacterized protein OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 860.136 bits (2221), Expect = 0.000e+0
Identity = 470/663 (70.89%), Postives = 537/663 (81.00%), Query Frame = 3
Query:  129 WQDMFRSASVRKPSPAPGNSDXXXXXXXXXXXXXXSTDPDHKNSLSG-DPQVRLALYIAMAHAGLAFTIFILYAICKLLQEYFRPIQWAILCSIPLRGIQETLVGFWSEPLRLGLTETVLAVPVAVFKAFIGTLVDIKDVCLRVFLKRPKSNLSRRKR-SGFPMLVRWLVAFAVFVIAYERXXXXXXXXXXXXXXXXSTKNIDDXXXXXXXXXXXXXXXXXXXAYFTTRILKRLDTIVAIGLIIGMFVGFFAGATFFSYKIGVEGKDAVVSVKSHVEESNYAERMGVKRWMEENDVPGMVDKYTTQFYETVSEQIDNLAMQYNMTEFVTGIKHFVIXXXXXXXXXXXALMTPSPYTEKFLSLRKRVSNREWGQIYTEVDAIFRELIITREDLVQKAKGFAVKGADVSQRVLASSASVLGGGAKIMFTIGNSILYGAAEVFNFVSQLMVFFWVLYYLITSESGGVTEQVMSMIPISKPARIRCVEVLDEAISGVLLATAEIAFFQGCLTWLMFRLFEIHFVYMSTVLAFISPLLPIFPPWFATIPAAIELVLESRYIVAVVFSISHIVLMDYGAAEIQESIPGYSAYLTGLSIIGGMTLFPSAVE------------------------------GAIMGPLITTVVIALKDLYVEFVLEEPKK 2021
            WQ+MFRSAS RKP       D P +   +PP+ P+      K SLS  D Q RLA+YIAMAHAGLAF I +LY + KLLQEY RPIQWAILCSIPLRGIQETLV FWSEPL+LGLTE VLAVPV+VF  FIG++VDIK+VC RVFL+R K   +R+K  +GF  LV+WLV+F VFVIAYERIGG+GSL I+ LGF+ S+KN+D SLSAVSS RSNSFRRS  +AYFT  I+ RL+TIVAIGLI+ M VG   G  FFSYKIGVEGKDAV S+KSHVEESNYAE++G+K+WM+ENDVPGMVD YTT+FYETVSEQID+LAMQYNMTE VTGIKHFVI    ++S  STAL+TPSPYTEK +SLR RV NREW QIY+EVD IFRELIITREDLV+KAKGFAVKG DVSQRV +SSASV+GGGAK +F+IGN I+ GAAE FNF+SQLM+F WVLY LITSESGGVTEQVM+M+PI+  AR RCVEVLD AISGVLLATAEIAFFQGCLTWL+FRL+ IHF+YMSTVLAFIS LLPIFP WFATIPAA++LVLE RYIVAV+ S++H+VLM+YGA+EIQ+ IPG +AYLTGLSIIGG+TLFPSA+E                              GAIMGPLITTVVIALKDLY EFVL EPKK
Sbjct:   20 WQEMFRSASSRKPQ------DPPSSSSSSPPRKPSGDGSSSKTSLSTVDSQARLAMYIAMAHAGLAFAICVLYFVGKLLQEYLRPIQWAILCSIPLRGIQETLVDFWSEPLKLGLTEVVLAVPVSVFNVFIGSIVDIKNVCFRVFLRRSKPKRTRKKNDTGFSKLVKWLVSFGVFVIAYERIGGIGSLVILSLGFLFSSKNVDSSLSAVSSLRSNSFRRSHFTAYFTRGIMTRLNTIVAIGLIVLMIVGSLTGVIFFSYKIGVEGKDAVYSLKSHVEESNYAEKIGIKQWMDENDVPGMVDMYTTKFYETVSEQIDSLAMQYNMTELVTGIKHFVIGHPQNTSTPSTALITPSPYTEKLMSLRTRVKNREWSQIYSEVDVIFRELIITREDLVEKAKGFAVKGMDVSQRVFSSSASVVGGGAKFVFSIGNLIISGAAEFFNFISQLMIFIWVLYILITSESGGVTEQVMNMLPINASARNRCVEVLDLAISGVLLATAEIAFFQGCLTWLLFRLYNIHFLYMSTVLAFISALLPIFPYWFATIPAALQLVLEGRYIVAVILSVTHLVLMEYGASEIQDDIPGSNAYLTGLSIIGGVTLFPSALEVRKLKDWVFMKFGTKIGDFVMFFSGILLLQGAIMGPLITTVVIALKDLYAEFVLNEPKK 676          
BLAST of g.arboreum_cottongen_reftransV1_0011016 vs. ExPASy TrEMBL
Match: A0A0A0K642_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G278730 PE=4 SV=1)

HSP 1 Score: 858.981 bits (2218), Expect = 0.000e+0
Identity = 440/627 (70.18%), Postives = 519/627 (82.78%), Query Frame = 3
Query:  129 WQDMFRSASVRKPSPAPGNSDXXXXXXXXXXXXXXSTDPDHKNSLSGDPQVRLALYIAMAHAGLAFTIFILYAICKLLQEYFRPIQWAILCSIPLRGIQETLVGFWSEPLRLGLTETVLAVPVAVFKAFIGTLVDIKDVCLRVFLKRPKSNLSRRKRSGFPMLVRWLVAFAVFVIAYERXXXXXXXXXXXXXXXXSTKNIDDXXXXXXXXXXXXXXXXXXXAYFTTRILKRLDTIVAIGLIIGMFVGFFAGATFFSYKIGVEGKDAVVSVKSHVEESNYAERMGVKRWMEENDVPGMVDKYTTQFYETVSEQIDNLAMQYNMTEFVTGIKHFVIXXXXXXXX-XXXALMTPSPYTEKFLSLRKRVSNREWGQIYTEVDAIFRELIITREDLVQKAKGFAVKGADVSQRVLASSASVLGGGAKIMFTIGNSILYGAAEVFNFVSQLMVFFWVLYYLITSESGGVTEQVMSMIPISKPARIRCVEVLDEAISGVLLATAEIAFFQGCLTWLMFRLFEIHFVYMSTVLAFISPLLPIFPPWFATIPAAIELVLESRYIVAVVFSISHIVLMDYGAAEIQESIPGYSAYLTGLSIIGGMTLFPSAVEGAIMGPLITTVVIALKDLYVEFVL 2006
            WQDMFRS SVRKPSP P N  +                 D  +S SGDPQVRLALYIAMAHAGLAFTI  LYA+ ++L+ Y RP+QWA+LCSIPLRGIQ+TL GFWSEPL+LGLTET+LA+PVAVFK F+GTLV  ++VC RV L+R KS   RR +S F  L+RWLV+F +F++AYE  G +GS+ ++ LGF+ S+K++D +   VSSFRS SFRR+ +SA+FT  +LKRL TIVAIGLI+ M V F AG+ FFSYKIGVEGKDA++S+K HVEESNYAER+GVK+WMEEND+PGM+D YT+QFYE V EQID+ AMQYNMTEFVTGIKH  ++S+ ++S   ST+L+TPSPYT+K +SLR  VSN+EWGQIYTE+DAI RELIITREDLV+KAKG AV+G D+SQRV ASS SVLGG AK+M +IG SI+ GAAEVFNFVSQ MVFFWVLYYLITSESGGVTEQVM M+PI   ARIRCVEVLD AISGVLLATAEIA +QGCLTWL+ RLFEIHF+Y+STVLAF+SPL PIFP WFATIPAA++L+LE RY+VA+  +I H+ LMDYG +EIQE IPG+S YL GLSIIGGMTLF SA+EGAIMGPLITTVVIALKDLYVEFVL
Sbjct:   24 WQDMFRSGSVRKPSPDPQNQSSKL------------PQSDSNSSFSGDPQVRLALYIAMAHAGLAFTILTLYAVGRILEAYLRPLQWAVLCSIPLRGIQQTLEGFWSEPLQLGLTETLLAIPVAVFKVFVGTLVQFREVCFRVVLRRKKSGHVRRNQSVFSKLLRWLVSFWIFILAYENFGVIGSVSLLGLGFLFSSKSVDPTRYNVSSFRSLSFRRTAVSAFFTKGLLKRLKTIVAIGLIVAMIVVFLAGSVFFSYKIGVEGKDAMISLKLHVEESNYAERIGVKKWMEENDLPGMIDSYTSQFYEAVLEQIDSYAMQYNMTEFVTGIKHLALSSSRANSSGASTSLITPSPYTQKLMSLRNSVSNKEWGQIYTELDAIIRELIITREDLVEKAKGLAVQGMDISQRVFASSVSVLGGSAKLMLSIGRSIISGAAEVFNFVSQSMVFFWVLYYLITSESGGVTEQVMHMLPIEDSARIRCVEVLDHAISGVLLATAEIAIYQGCLTWLLLRLFEIHFLYVSTVLAFLSPLFPIFPSWFATIPAALQLLLEGRYVVAICLAIIHLALMDYGISEIQEDIPGHSEYLMGLSIIGGMTLFSSALEGAIMGPLITTVVIALKDLYVEFVL 638          
BLAST of g.arboreum_cottongen_reftransV1_0011016 vs. ExPASy TrEMBL
Match: A0A067EVW6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g006268mg PE=4 SV=1)

HSP 1 Score: 856.67 bits (2212), Expect = 0.000e+0
Identity = 465/630 (73.81%), Postives = 526/630 (83.49%), Query Frame = 3
Query:   69 MELVXXXXXXXXXXXXXXXXWQDMFRSASVRKPSPAPGNSDXXXXXXXXXXXXXXSTDPDHKNSLSGDPQVRLALYIAMAHAGLAFTIFILYAICKLLQEYFRPIQWAILCSIPLRGIQETLVGFWSEPLRLGLTETVLAVPVAVFKAFIGTLVDIKDVCLRVFLKRPKSNLSRRKRSGFPMLVRWLVAFAVFVIAYERXXXXXXXXXXXXXXXXSTKNIDDXXXXXXXXXXXXXXXXXXXAYFTTRILKRLDTIVAIGLIIGMFVGFFAGATFFSYKIGVEGKDAVVSVKSHVEESNYAERMGVKRWMEENDVPGMVDKYTTQFYETVSEQIDNLAMQYNMTEFVTGIKHFVIXXXXXXXXXXXALMTPSPYTEKFLSLRKRVSNREWGQIYTEVDAIFRELIITREDLVQKAKGFAVKGADVSQRVLASSASVLGGGAKIMFTIGNSILYGAAEVFNFVSQLMVFFWVLYYLITSESGGVTEQVMSMIPISKPARIRCVEVLDEAISGVLLATAEIAFFQGCLTWLMFRLFEIHFVYMSTVLAFISPLLPIFPPWFATIPAAIELVLESRYIVAVVFSISHIVLMDYGAAEIQESIPGYSAYLTGLSIIGGMTLFPSAVEGAIMGPLI 1958
            MELVP+S +P  K SS+T PWQDMFRSAS+RKPS    +    P     PP   NST P  K + SGDPQVRLALYIA+AHAGLAFT+FILY I KLLQ+Y RPIQWAIL SIPLRGIQ+ LV FWSEPL+LGLTETVLAVPVA+FK F+GTLVDIK+V  +VFLK+ K+N  R  RSGF  LVRWLV+FAVFVIAYE IG VGSL I+ LGF+ ST N+D ++SAVSSFRS SF R+  S+YFT RILKRL+TIVAIGLI+GM V F AG  FFSYKIGVEGKDAV+S+KSHVEESNYAER+GVK+WMEENDVPGMVD+YTT FYETVSEQ+D+LAMQYNMTEFVTGIKHFVI     SS +S AL + SPYT+K +SLR RV+ REW QIYTEVDAIFREL+ITREDLVQKAK FA +G +VSQRV A SASVLG  AK+M + G  I+ GAAEVFNFVSQLM+F WVLYYLITSESGGVTEQVM M+PISKPARIRCVEV+D AISGVLLAT EIAFFQGCLTWL+FR F+IHF+YMST LAFIS L PIFP WFATIPAA++L+LESRYIVA+  S+ H+VL+DYG  EIQE IPGYS YLTGLSIIGGMTLFPSA+E  ++G LI
Sbjct:    1 MELVPFSDDPDKKSSSTTPPWQDMFRSASIRKPSATSNSQAPLPESHAPPPSQANSTAPGQKTTCSGDPQVRLALYIALAHAGLAFTLFILYFIFKLLQDYIRPIQWAILLSIPLRGIQQALVAFWSEPLQLGLTETVLAVPVAIFKVFVGTLVDIKEVFFKVFLKKLKNNGPRHSRSGFSKLVRWLVSFAVFVIAYETIGAVGSLVILALGFLFSTTNVDSTMSAVSSFRSKSFGRTPFSSYFTRRILKRLETIVAIGLIVGMMVVFLAGIIFFSYKIGVEGKDAVISIKSHVEESNYAERLGVKKWMEENDVPGMVDRYTTTFYETVSEQVDSLAMQYNMTEFVTGIKHFVIAPPAGSSEQSKALTSLSPYTQKLMSLRNRVTKREWKQIYTEVDAIFRELVITREDLVQKAKEFAYQGINVSQRVFAGSASVLGSSAKLMLSTGYLIISGAAEVFNFVSQLMIFLWVLYYLITSESGGVTEQVMGMLPISKPARIRCVEVIDNAISGVLLATVEIAFFQGCLTWLLFRFFKIHFLYMSTTLAFISALFPIFPFWFATIPAAVQLLLESRYIVAISLSVIHLVLLDYGTCEIQEDIPGYSPYLTGLSIIGGMTLFPSALELLVIGDLI 630          
BLAST of g.arboreum_cottongen_reftransV1_0011016 vs. ExPASy Swiss-Prot
Match: TM245_HUMAN (Transmembrane protein 245 OS=Homo sapiens GN=TMEM245 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.445e-16
Identity = 64/217 (29.49%), Postives = 114/217 (52.53%), Query Frame = 3
Query: 1422 YGAAEVFNFVSQLMVFFWVLYYLITS--ESGGVTEQVMSMIPISKPARIRCV--EVLDEAISGVLLATAEIAFFQGCLTWLMFRLFEIHFVYMSTVLAFISPLLPIFPPWFATIPAAIELVL-ESRYIVAVVFSISHIVLMDYGAAEIQESIPGYS-AYLTGLSIIGGMTLFPSAVEGAIMGPLITTVVIALKDLYVEFVLEEPKKKD*KN-TPYPS 2051
            Y    + NFV  L++F   L+YL++S  E     + V+S+ P+S+P     +  + ++EAI GV  A+ ++A F G  TWL   +F I+ V++ + LA I   +P    ++A +PA ++L L +     A++  I H++   +    I   I G    YLTGL++ GG       +EGAI+GP++  +++   ++Y   ++         N TP+P+
Sbjct:  647 YSGTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIRGVFDASLKMAGFYGLYTWLTHTMFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWLTQGLGCKAILLLIFHLLPTYFVDTAIYSDISGGGHPYLTGLAVAGGAYYL--GLEGAIIGPILLCILVVASNIYSAMLVSPTNSVPTPNQTPWPA 861          
BLAST of g.arboreum_cottongen_reftransV1_0011016 vs. ExPASy Swiss-Prot
Match: TM245_MOUSE (Transmembrane protein 245 OS=Mus musculus GN=Tmem245 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.374e-16
Identity = 63/217 (29.03%), Postives = 114/217 (52.53%), Query Frame = 3
Query: 1422 YGAAEVFNFVSQLMVFFWVLYYLITS--ESGGVTEQVMSMIPISKPARIRCV--EVLDEAISGVLLATAEIAFFQGCLTWLMFRLFEIHFVYMSTVLAFISPLLPIFPPWFATIPAAIELVL-ESRYIVAVVFSISHIVLMDYGAAEIQESIP-GYSAYLTGLSIIGGMTLFPSAVEGAIMGPLITTVVIALKDLYVEFVLEEPKKKD*KN-TPYPS 2051
            Y    + NFV  L++F   L+YL++S  E     + V+S+ P+S+P     +  + ++EAI GV  A+ ++A F G  TWL   +F I+ V++ + LA I   +P    ++A +PA ++L L +     A++  + H++   +    I   I  G   YLTGL++ GG       +EGAI+GP++  +++   ++Y   ++         N TP+P+
Sbjct:  644 YSGTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIRGVFDASLKMAGFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWLTQGLGCKAILLLVFHLLPTYFVDTAIYSDISGGGHPYLTGLAVAGGAYYL--GLEGAIIGPILLCILVVASNIYSAMLVSPTNSMPTPNQTPWPA 858          
BLAST of g.arboreum_cottongen_reftransV1_0011016 vs. ExPASy Swiss-Prot
Match: TM245_RAT (Transmembrane protein 245 OS=Rattus norvegicus GN=Tmem245 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 8.387e-16
Identity = 63/217 (29.03%), Postives = 113/217 (52.07%), Query Frame = 3
Query: 1422 YGAAEVFNFVSQLMVFFWVLYYLITS--ESGGVTEQVMSMIPISKPARIRCV--EVLDEAISGVLLATAEIAFFQGCLTWLMFRLFEIHFVYMSTVLAFISPLLPIFPPWFATIPAAIELVL-ESRYIVAVVFSISHIVLMDYGAAEIQESIP-GYSAYLTGLSIIGGMTLFPSAVEGAIMGPLITTVVIALKDLYVEFVLEEPKK-KD*KNTPYPS 2051
            Y    + NFV  L++F   L+YL++S  E     + V+S+ P+S+P     +  + ++EAI GV  A+ ++A F G  TWL   +F I+ V++ + LA I   +P    ++A +PA ++L L +     AV+  + H++   +    I   I  G   YLTGL++ GG       +EGAI+GP++  +++   ++Y   ++           TP+P+
Sbjct:  644 YSGTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIRGVFDASLKMAGFYGLYTWLTHTVFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWLTQGLGCKAVLLLVFHLLPTYFVDTAIYSDISGGGHPYLTGLAVAGGAYYL--GLEGAIIGPILLCILVVASNIYSAMLVSPTNSMPTPSQTPWPA 858          
BLAST of g.arboreum_cottongen_reftransV1_0011016 vs. ExPASy Swiss-Prot
Match: TM245_BOVIN (Transmembrane protein 245 OS=Bos taurus GN=TMEM245 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 5.365e-15
Identity = 68/244 (27.87%), Postives = 125/244 (51.23%), Query Frame = 3
Query: 1350 VLASSASVLGGGAKIMFTIGNSILYGAAEVFNFVSQLMVFFWVLYYLITS--ESGGVTEQVMSMIPISKPARIRCV--EVLDEAIS---GVLLATAEIAFFQGCLTWLMFRLFEIHFVYMSTVLAFISPLLPIFPPWFATIPAAIELVL-ESRYIVAVVFSISHIVLMDYGAAEIQESIP-GYSAYLTGLSIIGGMTLFPSAVEGAIMGPLITTVVIALKDLYVEFVLEEPKKKD*KN-TPYPS 2051
            V++ + S+L      + TI   + Y    + NFV  L++F   L+YL++S  E     + V+S+ P+S+P     +  + ++EAI    GV  A+ ++A F G  TWL   +F I+ V++ + LA I   +P    ++A +PA ++L L +     A++  + H++   +    I   I  G   YLTGL++ GG       +EGAI+GP++  +++   ++Y   ++         N TP+P+
Sbjct:  626 VMSRNVSLLFSTITTLLTI---LFYSGTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIRHSRGVFDASLKMAGFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWLTQGLGCKAILLLVFHLLPTYFVDTAIYSDISGGGHPYLTGLAVAGGAYYL--GLEGAIIGPILLCILVVASNIYSAMLVSPTNSVPTPNQTPWPA 864          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011016 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
W9S228_9ROSA0.000e+072.48ABC transporter G family member 26 OS=Morus notabi... [more]
R0GPI5_9BRAS0.000e+073.14Uncharacterized protein OS=Capsella rubella GN=CAR... [more]
Q9FG69_ARATH0.000e+070.89Putative uncharacterized protein OS=Arabidopsis th... [more]
A0A0A0K642_CUCSA0.000e+070.18Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
A0A067EVW6_CITSI0.000e+073.81Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0011016 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TM245_HUMAN1.445e-1629.49Transmembrane protein 245 OS=Homo sapiens GN=TMEM2... [more]
TM245_MOUSE2.374e-1629.03Transmembrane protein 245 OS=Mus musculus GN=Tmem2... [more]
TM245_RAT8.387e-1629.03Transmembrane protein 245 OS=Rattus norvegicus GN=... [more]
TM245_BOVIN5.365e-1527.87Transmembrane protein 245 OS=Bos taurus GN=TMEM245... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002549Transmembrane protein TqsA-likePFAMPF01594UPF0118coord: 447..639
e-value: 2.0E-9
score: 36.9
IPR002549Transmembrane protein TqsA-likePANTHERPTHR21716TRANSMEMBRANE PROTEINcoord: 34..654
NoneNo IPR availablePANTHERPTHR21716:SF4TRANSMEMBRANE PROTEIN 245coord: 34..654
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 452..477
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 509..532
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 627..648
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 592..602
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 539..561
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 533..538
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..74
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 573..591
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 257..277
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 622..626
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 75..97
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 188..217
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 168..187
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 562..572
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 603..621
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 98..108
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 130..140
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 218..256
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 141..167
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 278..451
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 649..655
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 478..508
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 109..129
NoneNo IPR availableTMHMMTMhelixcoord: 626..648
NoneNo IPR availableTMHMMTMhelixcoord: 539..561
NoneNo IPR availableTMHMMTMhelixcoord: 185..217
NoneNo IPR availableTMHMMTMhelixcoord: 257..279
NoneNo IPR availableTMHMMTMhelixcoord: 510..532
NoneNo IPR availableTMHMMTMhelixcoord: 75..97
NoneNo IPR availableTMHMMTMhelixcoord: 452..474
NoneNo IPR availableTMHMMTMhelixcoord: 571..588
NoneNo IPR availableTMHMMTMhelixcoord: 600..622

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0011016 ID=g.arboreum_cottongen_reftransV1_0011016; Name=g.arboreum_cottongen_reftransV1_0011016; organism=Gossypium arboreum; type=contig; length=2436bp
CAAAGGAACTTTGTCTCTCTTCTTCTGCAAAGACTTGATCTTTCTGTGTT
CGAAAAACTGTCCTGGACATGGAGTTGGTTCCATATTCAAGTGAACCAAA
ACCCAAACCAAGCTCCTCAACTCTTCCATGGCAAGACATGTTCCGATCTG
CATCGGTAAGGAAGCCTTCTCCAGCACCAGGCAACAGCGACGCGCCTCCC
AACCAACCTCACGCGCCACCCCAGGTTCCGAACTCAACCGACCCAGATCA
CAAAAACAGCCTCTCGGGTGATCCCCAGGTACGGTTGGCTCTTTACATAG
CCATGGCTCATGCTGGCCTTGCCTTCACCATATTCATTTTATATGCGATT
TGCAAGCTTTTGCAAGAGTATTTTAGGCCAATTCAGTGGGCTATCTTGTG
TTCGATTCCTTTAAGAGGTATACAAGAAACCCTTGTGGGATTTTGGAGCG
AACCTTTGAGACTAGGCCTCACTGAAACTGTTCTTGCTGTTCCTGTTGCT
GTCTTCAAGGCTTTTATAGGTACCCTTGTTGATATTAAGGATGTCTGTTT
GAGGGTGTTCCTTAAAAGACCAAAATCTAATCTTTCAAGGCGCAAGAGAA
GTGGGTTTCCAATGCTAGTTAGGTGGTTAGTAGCTTTCGCTGTGTTTGTG
ATTGCCTATGAGAGAATTGGTGGTGTTGGGTCATTGGGCATAATTGTGTT
GGGGTTTGTGATTAGTACTAAAAACATAGATGATTCATTGTCTGCTGTTT
CATCATTTAGGAGTAACAGTTTCAGGAGAAGTAGAATGAGTGCGTATTTC
ACTACTAGGATACTTAAAAGGTTGGATACTATTGTGGCTATTGGGCTGAT
AATTGGTATGTTTGTGGGGTTCTTTGCTGGAGCTACATTTTTCTCGTATA
AGATCGGTGTTGAGGGAAAAGATGCCGTGGTTTCGGTGAAATCTCATGTG
GAAGAGAGTAACTATGCTGAGAGGATGGGTGTTAAAAGATGGATGGAAGA
GAATGATGTCCCTGGAATGGTGGATAAGTACACTACTCAGTTCTATGAAA
CAGTTTCCGAGCAGATTGATAACTTGGCAATGCAGTATAATATGACGGAG
TTTGTGACCGGAATTAAGCATTTCGTCATAACTTCAACCACCAGTTCATC
AGTGCGATCGACAGCTTTGATGACCCCCTCTCCTTATACGGAAAAGTTTT
TGAGTTTGAGGAAGAGGGTTAGCAATCGCGAGTGGGGGCAAATTTACACC
GAAGTCGATGCGATTTTCAGAGAGTTGATAATCACTCGGGAGGATTTGGT
GCAAAAGGCTAAAGGGTTTGCTGTTAAAGGGGCAGATGTTTCGCAACGGG
TGCTAGCAAGCAGTGCTTCTGTTTTAGGTGGAGGCGCGAAGATCATGTTC
ACCATCGGCAATTCCATCCTCTACGGAGCTGCTGAGGTGTTCAATTTTGT
ATCTCAGTTGATGGTGTTCTTTTGGGTTCTATATTACCTTATCACATCAG
AATCTGGTGGAGTAACAGAACAAGTAATGTCTATGATTCCAATATCAAAA
CCGGCTAGGATTAGATGCGTGGAAGTTCTTGATGAAGCTATTTCTGGCGT
GCTTTTGGCAACAGCTGAGATTGCATTCTTTCAAGGATGTCTTACATGGC
TTATGTTTAGACTGTTTGAAATACACTTTGTGTATATGTCAACAGTGCTT
GCTTTCATCAGCCCCTTATTGCCCATATTTCCACCTTGGTTTGCGACAAT
TCCTGCAGCTATAGAACTAGTGCTTGAAAGTAGATACATAGTAGCTGTGG
TCTTCTCCATTAGTCACATTGTGCTTATGGATTATGGTGCTGCTGAAATC
CAGGAGAGCATACCTGGTTACAGTGCCTACCTTACAGGGCTTAGCATCAT
TGGTGGAATGACATTGTTCCCTTCTGCAGTTGAGGGAGCAATTATGGGAC
CATTGATTACGACGGTTGTGATCGCTTTGAAAGATCTCTATGTGGAATTC
GTTCTGGAAGAACCTAAGAAAAAAGACTAGAAGAACACACCATACCCTTC
AACGGGTTTGCTTCCATGGTGGAGAGAGCTCATGTATATTAGTACCACTG
GTTTCCAACAACTTCAAACCACAATTCTTTGCTACTTGAACAGTGCTTCA
ATCTACATGCTATGTTTATTACATTTTTTTATATCCCTTTGAAATCAGTG
GCAATGGTTATGTATCCTCGTGTTTGCTTAGAAAGAAAGCAATATCGTAT
ATTCTTTGATTCAGTATTTAAACATGTAATAACTGGTGAAGCCAATGTTT
GAGTTCTGTATTTAAACAAGTAAGAACTGGTGAAAGGCAATATTTGAGTT
GAGAGAGAATGTGTGAAGTTGGTGGACTTGTTTCTTTATTTTTATCTGTT
ACAGGCAGCACCAAATAATACATCCCAAGAAGCAAG
back to top
Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR002549AI-2E-like