g.arboreum_cottongen_reftransV1_0017713, g.arboreum_cottongen_reftransV1_0017713 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0017713 vs. ExPASy TrEMBL
Match: A0A0B0N7K5_GOSAR (Protein SCARECROW-like protein OS=Gossypium arboreum GN=F383_05220 PE=4 SV=1) HSP 1 Score: 303.138 bits (775), Expect = 9.099e-94 Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = -3 Query: 3 MLMAACDLVGENGGINGRNSNDESQMRSTMRKRMASEVADYHRFPRRTQFVSDNNMACSFIAATGASNNPNPLFNYSTMNMDNVNTIVPSANFAALTSAGPAFLSTTASNFSCVDAVGTNSPQPPAVCGFSGLPLFPPTERNRNXXXXXXXXXXXXXXXXXXXSLAPI 506 MLMAACDLVGENGGINGRNSNDESQMRSTMRKRMASEVADYHRFPRRTQFVSDNNMACSFIAATGASNNPNPLFNYSTMNMDNVNTIVPSANFAALTSAGPAFLSTTASNFSCVDAVGTNSPQPPAVCGFSGLPLFPPTERNRNTAVASAAVTATSVNTTVPVSLAPI Sbjct: 1 MLMAACDLVGENGGINGRNSNDESQMRSTMRKRMASEVADYHRFPRRTQFVSDNNMACSFIAATGASNNPNPLFNYSTMNMDNVNTIVPSANFAALTSAGPAFLSTTASNFSCVDAVGTNSPQPPAVCGFSGLPLFPPTERNRNTAVASAAVTATSVNTTVPVSLAPI 168
BLAST of g.arboreum_cottongen_reftransV1_0017713 vs. ExPASy TrEMBL
Match: A0A0D2T3D3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G236200 PE=4 SV=1) HSP 1 Score: 296.59 bits (758), Expect = 2.884e-91 Identity = 163/168 (97.02%), Postives = 166/168 (98.81%), Query Frame = -3 Query: 3 MLMAACDLVGENGGINGRNSNDESQMRSTMRKRMASEVADYHRFPRRTQFVSDNNMACSFIAATGASNNPNPLFNYSTMNMDNVNTIVPSANFAALTSAGPAFLSTTASNFSCVDAVGTNSPQPPAVCGFSGLPLFPPTERNRNXXXXXXXXXXXXXXXXXXXSLAPI 506 MLMAACDLVGENGGINGRNSNDES MRSTMRKRMASEVADYHRFPRRTQFVSDNNMACSF+AATGASNNPNPLFNYSTMNMDNVNT+VPSANFAALTSAGPAFLSTTASNFSCVDAVGTN+PQPPAVCGFSGLPLFPPTERNRNTAV SAAVTATSVNTTVPVSLAPI Sbjct: 1 MLMAACDLVGENGGINGRNSNDESPMRSTMRKRMASEVADYHRFPRRTQFVSDNNMACSFMAATGASNNPNPLFNYSTMNMDNVNTVVPSANFAALTSAGPAFLSTTASNFSCVDAVGTNTPQPPAVCGFSGLPLFPPTERNRNTAVDSAAVTATSVNTTVPVSLAPI 168
BLAST of g.arboreum_cottongen_reftransV1_0017713 vs. ExPASy TrEMBL
Match: A0A061EF07_THECC (GRAS family transcription factor isoform 1 OS=Theobroma cacao GN=TCM_017746 PE=4 SV=1) HSP 1 Score: 186.808 bits (473), Expect = 8.023e-51 Identity = 97/160 (60.62%), Postives = 116/160 (72.50%), Query Frame = -3 Query: 75 NSLMLMAACDLVGENGG-INGRNSNDESQMRST----------MRKRMASEVADYHRFPRRT--QFVSDNNMACSFIAATGASNNPNPLFNYSTMNMDNVNTIVPSANFAALTSAGPAFLSTTASNFSCVDAVGTNSPQPPAVCGFSGLPLFPPTERNRN 515 ++L+ MAACDLVGENG ING +++ ES + S MRKRMASE+ADYHRFPRR+ NM CSF+AA +NNPNPL NYSTMNM+ TI+PSAN A+TS GPAFL TT SN +C+D + T +P PPAVCGFSGLPLFPPT+RNRN Sbjct: 14 DTLLFMAACDLVGENGSEINGCSNSRESPVTSASNSSTSEGKMMRKRMASEIADYHRFPRRSLPSHPPSENMGCSFLAAATTANNPNPLLNYSTMNMNT--TIIPSANLTAVTSGGPAFLCTTTSNITCIDNLSTTNPPPPAVCGFSGLPLFPPTDRNRN 171
BLAST of g.arboreum_cottongen_reftransV1_0017713 vs. ExPASy TrEMBL
Match: A0A061EDZ9_THECC (GRAS family transcription factor isoform 3 OS=Theobroma cacao GN=TCM_017746 PE=4 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 1.339e-49 Identity = 96/155 (61.94%), Postives = 112/155 (72.26%), Query Frame = -3 Query: 75 MAACDLVGENGG-INGRNSNDESQMRST----------MRKRMASEVADYHRFPRRT--QFVSDNNMACSFIAATGASNNPNPLFNYSTMNMDNVNTIVPSANFAALTSAGPAFLSTTASNFSCVDAVGTNSPQPPAVCGFSGLPLFPPTERNRN 500 MAACDLVGENG ING +++ ES + S MRKRMASE+ADYHRFPRR+ NM CSF+AA +NNPNPL NYSTMNM+ TI+PSAN A+TS GPAFL TT SN +C+D + T +P PPAVCGFSGLPLFPPT+RNRN Sbjct: 1 MAACDLVGENGSEINGCSNSRESPVTSASNSSTSEGKMMRKRMASEIADYHRFPRRSLPSHPPSENMGCSFLAAATTANNPNPLLNYSTMNMNT--TIIPSANLTAVTSGGPAFLCTTTSNITCIDNLSTTNPPPPAVCGFSGLPLFPPTDRNRN 153
BLAST of g.arboreum_cottongen_reftransV1_0017713 vs. ExPASy TrEMBL
Match: A0A061ELM0_THECC (GRAS family transcription factor isoform 2 OS=Theobroma cacao GN=TCM_017746 PE=4 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 2.089e-49 Identity = 96/155 (61.94%), Postives = 112/155 (72.26%), Query Frame = -3 Query: 75 MAACDLVGENGG-INGRNSNDESQMRST----------MRKRMASEVADYHRFPRRT--QFVSDNNMACSFIAATGASNNPNPLFNYSTMNMDNVNTIVPSANFAALTSAGPAFLSTTASNFSCVDAVGTNSPQPPAVCGFSGLPLFPPTERNRN 500 MAACDLVGENG ING +++ ES + S MRKRMASE+ADYHRFPRR+ NM CSF+AA +NNPNPL NYSTMNM+ TI+PSAN A+TS GPAFL TT SN +C+D + T +P PPAVCGFSGLPLFPPT+RNRN Sbjct: 1 MAACDLVGENGSEINGCSNSRESPVTSASNSSTSEGKMMRKRMASEIADYHRFPRRSLPSHPPSENMGCSFLAAATTANNPNPLLNYSTMNMNT--TIIPSANLTAVTSGGPAFLCTTTSNITCIDNLSTTNPPPPAVCGFSGLPLFPPTDRNRN 153
BLAST of g.arboreum_cottongen_reftransV1_0017713 vs. ExPASy TrEMBL
Match: A0A0D2R6S0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G001300 PE=4 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 7.399e-36 Identity = 86/156 (55.13%), Postives = 101/156 (64.74%), Query Frame = -3 Query: 75 MAACDLVGENGG-INGRNS---------NDESQMRSTMRKRMASEVADYHRFPRRTQFVS----DNNMACSFIAATGASNNPNPLFNYSTMNMDNVNTIVPSANFAALTSAGPAFLSTTASNFSCVDAVGTNSPQPPAVCGFSGLPLFPPTERNRN 500 M A DLV EN NG +S N+ S + MRKRMASE+AD RFPRRT VS DNN CSF+ A +SN PL N+S + M+ I PSANF A+TS GPA LSTT S F+C+D + T+ P PPAVCGFSGLPLFPPT+RNRN Sbjct: 1 MDASDLVDENHSETNGSSSSRGHPVAVANNTSDGK-MMRKRMASEIADNQRFPRRT-LVSEPEPDNNTVCSFLPAPASSN---PLLNHSNIKMNTA--IFPSANFIAVTSGGPAVLSTTTSTFTCIDTISTSKPHPPAVCGFSGLPLFPPTDRNRN 149 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0017713 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 6
BLAST of g.arboreum_cottongen_reftransV1_0017713 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0017713 ID=g.arboreum_cottongen_reftransV1_0017713; Name=g.arboreum_cottongen_reftransV1_0017713; organism=Gossypium arboreum; type=contig; length=742bpback to top |