g.arboreum_cottongen_reftransV1_0004832, g.arboreum_cottongen_reftransV1_0004832 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0004832 vs. ExPASy TrEMBL
Match: D7MG79_ARALL (Lecithin:cholesterol acyltransferase family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_492884 PE=4 SV=1) HSP 1 Score: 333.569 bits (854), Expect = 1.491e-107 Identity = 161/206 (78.16%), Postives = 182/206 (88.35%), Query Frame = -2 Query: 2 MAMLLEDILQSVEIWLKLIKKPQ-PYVDPNLDPVLLVPGIAGSILTAVDDQNGKEERVWVRILGANYKFRTKLWSRFDPSTGKTESLDPNTTIKVPGGRYGLGAIDVLDPDMIVGRDCVCYFHDMIVEMLKWGFQEGKTLFGFGYDFRQSNRLQETMDRLAEKLELVYEASGGKKINVISHSMGGLLVKCFMGLHSDIFQKYVKNW 616 M++LLE+I++SVE LKL + Q PYVDPNLDPVLLVPGIAGSIL AVD +NG EERVWVRI GA+++FRTK+WSRFDPSTGKT SLDP T+I VP R GL AIDVLDPDMIVGR+ V YFH+MIVEM+ WGF+EGKTLFGFGYDFRQSNRLQET+D A+KLE VY+ASG KKINVISHSMGGLLVKCFMGLHSDIF+KYV+NW Sbjct: 1 MSLLLEEIIRSVEALLKLRNRNQKPYVDPNLDPVLLVPGIAGSILNAVDHENGNEERVWVRIFGADHEFRTKMWSRFDPSTGKTISLDPKTSIVVPQERAGLHAIDVLDPDMIVGRESVYYFHEMIVEMIGWGFEEGKTLFGFGYDFRQSNRLQETLDEFAKKLETVYKASGEKKINVISHSMGGLLVKCFMGLHSDIFEKYVQNW 206
BLAST of g.arboreum_cottongen_reftransV1_0004832 vs. ExPASy TrEMBL
Match: A2Q294_MEDTR (Lecithin:cholesterol acyltransferase OS=Medicago truncatula GN=MTR_4g083980 PE=4 SV=1) HSP 1 Score: 333.183 bits (853), Expect = 2.495e-107 Identity = 155/207 (74.88%), Postives = 181/207 (87.44%), Query Frame = -2 Query: 2 MAMLLEDILQSVEIWLKLIKKPQP--YVDPNLDPVLLVPGIAGSILTAVDDQNGKEERVWVRILGANYKFRTKLWSRFDPSTGKTESLDPNTTIKVPGGRYGLGAIDVLDPDMIVGRDCVCYFHDMIVEMLKWGFQEGKTLFGFGYDFRQSNRLQETMDRLAEKLELVYEASGGKKINVISHSMGGLLVKCFMGLHSDIFQKYVKNW 616 M MLLED+L+SVE+WL+LIKKPQP YV+PNLDPVLLVPG+ GSIL AV++ +G +ERVWVR L A YK +TKLWSR+DPSTGKT +LD + I VP R+GL AIDVLDPD+++G + V YFHDMIV+M KWG+QEGKTLFGFGYDFRQSNRLQETMDR AEKLEL+Y A+GGKKI++ISHSMGGLLVKCFM LHSDIF+KYVKNW Sbjct: 1 MTMLLEDVLRSVELWLRLIKKPQPQAYVNPNLDPVLLVPGVGGSILNAVNESDGSQERVWVRFLSAEYKLKTKLWSRYDPSTGKTVTLDQKSRIVVPEDRHGLHAIDVLDPDLVIGSEAVYYFHDMIVQMQKWGYQEGKTLFGFGYDFRQSNRLQETMDRFAEKLELIYNAAGGKKIDLISHSMGGLLVKCFMTLHSDIFEKYVKNW 207
BLAST of g.arboreum_cottongen_reftransV1_0004832 vs. ExPASy TrEMBL
Match: R0GPP2_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10007466mg PE=4 SV=1) HSP 1 Score: 332.798 bits (852), Expect = 3.310e-107 Identity = 160/206 (77.67%), Postives = 183/206 (88.83%), Query Frame = -2 Query: 2 MAMLLEDILQSVEIWLKLIKK-PQPYVDPNLDPVLLVPGIAGSILTAVDDQNGKEERVWVRILGANYKFRTKLWSRFDPSTGKTESLDPNTTIKVPGGRYGLGAIDVLDPDMIVGRDCVCYFHDMIVEMLKWGFQEGKTLFGFGYDFRQSNRLQETMDRLAEKLELVYEASGGKKINVISHSMGGLLVKCFMGLHSDIFQKYVKNW 616 M++LLE+I++SVE LKL + + YVDPNLDPVLLVPGIAGSIL AVD +NGKEERVWVRI GA+++FRTK+WSRFDPSTGKT SLDP T+I VP R GL AIDVLDPDMIVGR+ V YFH+MIVEML WGF+EGKTLFGFGYDFRQSNRLQET+D A+KLE VY+ASGGKKIN+ISHSMGGL+VKCFMGLHSDIF+KYV+NW Sbjct: 1 MSLLLEEIIRSVEALLKLRNRNHETYVDPNLDPVLLVPGIAGSILNAVDHENGKEERVWVRIFGADHEFRTKMWSRFDPSTGKTISLDPKTSIVVPQDRAGLHAIDVLDPDMIVGRESVFYFHEMIVEMLGWGFEEGKTLFGFGYDFRQSNRLQETLDEFAKKLETVYKASGGKKINLISHSMGGLMVKCFMGLHSDIFEKYVQNW 206
BLAST of g.arboreum_cottongen_reftransV1_0004832 vs. ExPASy TrEMBL
Match: V7CKA7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G098800g PE=4 SV=1) HSP 1 Score: 332.413 bits (851), Expect = 3.975e-107 Identity = 156/207 (75.36%), Postives = 181/207 (87.44%), Query Frame = -2 Query: 2 MAMLLEDILQSVEIWLKLIKKPQP--YVDPNLDPVLLVPGIAGSILTAVDDQNGKEERVWVRILGANYKFRTKLWSRFDPSTGKTESLDPNTTIKVPGGRYGLGAIDVLDPDMIVGRDCVCYFHDMIVEMLKWGFQEGKTLFGFGYDFRQSNRLQETMDRLAEKLELVYEASGGKKINVISHSMGGLLVKCFMGLHSDIFQKYVKNW 616 M +LL +ILQSVE+WLKLIKKPQP +V+PNLDPVLLVPG+ GSIL AV D +G +ERVWVR L A YK +TKLWSR+DPSTGKTES+DPN+TI +P R+GL AID+LDPD+++G + V YFHDMI EM KWGF+EGKTLFGFGYDFRQSNRLQETMDRLA+KLE +Y A+GGKKIN+ISHSMGGLLVKCFM L SDIF+KYVKNW Sbjct: 1 MTILLGEILQSVELWLKLIKKPQPEAFVNPNLDPVLLVPGVGGSILHAVSDADGSQERVWVRFLSAEYKLKTKLWSRYDPSTGKTESMDPNSTITIPEDRHGLYAIDILDPDLMIGSEGVYYFHDMIFEMRKWGFEEGKTLFGFGYDFRQSNRLQETMDRLADKLESIYNAAGGKKINIISHSMGGLLVKCFMCLQSDIFEKYVKNW 207
BLAST of g.arboreum_cottongen_reftransV1_0004832 vs. ExPASy TrEMBL
Match: A0A077D826_TOBAC (Lecithine cholesterol acyltransferase-like protein OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 331.643 bits (849), Expect = 9.412e-107 Identity = 151/205 (73.66%), Postives = 178/205 (86.83%), Query Frame = -2 Query: 2 MAMLLEDILQSVEIWLKLIKKPQPYVDPNLDPVLLVPGIAGSILTAVDDQNGKEERVWVRILGANYKFRTKLWSRFDPSTGKTESLDPNTTIKVPGGRYGLGAIDVLDPDMIVGRDCVCYFHDMIVEMLKWGFQEGKTLFGFGYDFRQSNRLQETMDRLAEKLELVYEASGGKKINVISHSMGGLLVKCFMGLHSDIFQKYVKNW 616 MA+LLE++++S+E+WLK IKKPQ Y+DP LDPVLLVPGIAGSIL A D + G+ ERVWVRILGA+++F KLW RFDPSTG+T +LDP+T+I+VP RYGL AID LDPDM++G DCV YFHDMI EML WG+QEGKTLFGFGYDFRQSNRL ETM+ +KLE ++ ASGGKKIN+ISHSMGGLLVKCFM LHSDIF+KYVKNW Sbjct: 1 MAVLLEELVKSIEMWLKPIKKPQEYIDPTLDPVLLVPGIAGSILNATDKKTGRTERVWVRILGADHEFCDKLWCRFDPSTGRTANLDPDTSIEVPQDRYGLYAIDTLDPDMVIGSDCVYYFHDMIAEMLSWGYQEGKTLFGFGYDFRQSNRLLETMECFTQKLESIHTASGGKKINIISHSMGGLLVKCFMALHSDIFEKYVKNW 205
BLAST of g.arboreum_cottongen_reftransV1_0004832 vs. ExPASy Swiss-Prot
Match: LCAT4_ARATH (Lecithin-cholesterol acyltransferase-like 4 OS=Arabidopsis thaliana GN=LCAT4 PE=1 SV=1) HSP 1 Score: 332.413 bits (851), Expect = 5.358e-109 Identity = 160/206 (77.67%), Postives = 183/206 (88.83%), Query Frame = -2 Query: 2 MAMLLEDILQSVEIWLKLIKKPQ-PYVDPNLDPVLLVPGIAGSILTAVDDQNGKEERVWVRILGANYKFRTKLWSRFDPSTGKTESLDPNTTIKVPGGRYGLGAIDVLDPDMIVGRDCVCYFHDMIVEMLKWGFQEGKTLFGFGYDFRQSNRLQETMDRLAEKLELVYEASGGKKINVISHSMGGLLVKCFMGLHSDIFQKYVKNW 616 M++LLE+I++SVE LKL + Q PYVDPNL+PVLLVPGIAGSIL AVD +NG EERVWVRI GA+++FRTK+WSRFDPSTGKT SLDP T+I VP R GL AIDVLDPDMIVGR+ V YFH+MIVEM+ WGF+EGKTLFGFGYDFRQSNRLQET+D+ A+KLE VY+ASG KKINVISHSMGGLLVKCFMGLHSDIF+KYV+NW Sbjct: 1 MSLLLEEIIRSVEALLKLRNRNQEPYVDPNLNPVLLVPGIAGSILNAVDHENGNEERVWVRIFGADHEFRTKMWSRFDPSTGKTISLDPKTSIVVPQDRAGLHAIDVLDPDMIVGRESVYYFHEMIVEMIGWGFEEGKTLFGFGYDFRQSNRLQETLDQFAKKLETVYKASGEKKINVISHSMGGLLVKCFMGLHSDIFEKYVQNW 206
BLAST of g.arboreum_cottongen_reftransV1_0004832 vs. ExPASy Swiss-Prot
Match: LCAT3_ARATH (Phospholipase A(1) LCAT3 OS=Arabidopsis thaliana GN=LCAT3 PE=1 SV=1) HSP 1 Score: 178.333 bits (451), Expect = 9.070e-51 Identity = 94/179 (52.51%), Postives = 119/179 (66.48%), Query Frame = -2 Query: 2 DPVLLVPGIAGSILTAVDDQNGKEERVWVRILGANYKFRTKLWSRFDPSTGKTESLDPNTTIKVPGGRYGLGAIDVLDPDMIVGRDC----VCYFHDMIVEMLKWGFQEGKTLFGFGYDFRQSNRLQETMDRLAEKLELVYEASGGKKINVISHSMGGLLVKCFMGLHSDIFQKYVKNW 526 DPVLLV GI GSIL + + E RVWVRI AN F+ LWS ++P TG TE LD N + VP +GL AID+LDP V + C V +FHDMI ++ G+++G TLFG+GYDFRQSNR+ + L +KLE Y+ SGG+K+ +ISHSMGGL+V CFM LH + F KYV W Sbjct: 24 DPVLLVSGIGGSILHSKKKNSKSEIRVWVRIFLANLAFKQSLWSLYNPKTGYTEPLDDNIEVLVPDDDHGLYAIDILDPSWFV-KLCHLTEVYHFHDMIEMLVGCGYKKGTTLFGYGYDFRQSNRIDLLILGLKKKLETAYKRSGGRKVTIISHSMGGLMVSCFMYLHPEAFSKYVNKW 201
BLAST of g.arboreum_cottongen_reftransV1_0004832 vs. ExPASy Swiss-Prot
Match: PDAT2_ARATH (Putative phospholipid:diacylglycerol acyltransferase 2 OS=Arabidopsis thaliana GN=PDAT2 PE=3 SV=1) HSP 1 Score: 54.299 bits (129), Expect = 5.116e-7 Identity = 56/170 (32.94%), Postives = 74/170 (43.53%), Query Frame = -2 Query: 44 PVLLVPGIAGSILTAVDDQNGKEERVWVRILGANYK--FRTKLWSRFDPSTGKTESLDPN--TTIKVPGGRYGLGAIDVLDPDMIVGRDCVCYFH--DMIVEMLKWGFQEGKTLFGFGYDFRQSNRLQETMD----RLAEKLELVYEASGGKKINVISHSMGGLLVKCFM 523 PV+LVPGI L + + E R+ GA++ R L S LDP+ VPG L A D P CYF +I + K G+ EGK L YD+R S E D RL K+EL+Y +G KK+ V+ HSMG + F+ Sbjct: 92 PVILVPGIVTGGLELWEGRPCAEGLFRKRLWGASFSEILRRPLCWLEHLSLDSETGLDPSGIRVRAVPG----LVAADYFAP---------CYFAWAVLIENLAKIGY-EGKNLHMASYDWRLSFHNTEVRDQSLSRLKSKIELMYATNGFKKVVVVPHSMGAIYFLHFL 247 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0004832 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0004832 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 3
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0004832 ID=g.arboreum_cottongen_reftransV1_0004832; Name=g.arboreum_cottongen_reftransV1_0004832; organism=Gossypium arboreum; type=contig; length=797bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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