g.arboreum_cottongen_reftransV1_0004832, g.arboreum_cottongen_reftransV1_0004832 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0004832
Unique Nameg.arboreum_cottongen_reftransV1_0004832
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length797
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr12chromosomeg.arboreum_cottongen_reftransV1_0004832:1..797 .
Chr12:48527132..48529056 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0004832 vs. ExPASy TrEMBL
Match: D7MG79_ARALL (Lecithin:cholesterol acyltransferase family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_492884 PE=4 SV=1)

HSP 1 Score: 333.569 bits (854), Expect = 1.491e-107
Identity = 161/206 (78.16%), Postives = 182/206 (88.35%), Query Frame = -2
Query:    2 MAMLLEDILQSVEIWLKLIKKPQ-PYVDPNLDPVLLVPGIAGSILTAVDDQNGKEERVWVRILGANYKFRTKLWSRFDPSTGKTESLDPNTTIKVPGGRYGLGAIDVLDPDMIVGRDCVCYFHDMIVEMLKWGFQEGKTLFGFGYDFRQSNRLQETMDRLAEKLELVYEASGGKKINVISHSMGGLLVKCFMGLHSDIFQKYVKNW 616
            M++LLE+I++SVE  LKL  + Q PYVDPNLDPVLLVPGIAGSIL AVD +NG EERVWVRI GA+++FRTK+WSRFDPSTGKT SLDP T+I VP  R GL AIDVLDPDMIVGR+ V YFH+MIVEM+ WGF+EGKTLFGFGYDFRQSNRLQET+D  A+KLE VY+ASG KKINVISHSMGGLLVKCFMGLHSDIF+KYV+NW
Sbjct:    1 MSLLLEEIIRSVEALLKLRNRNQKPYVDPNLDPVLLVPGIAGSILNAVDHENGNEERVWVRIFGADHEFRTKMWSRFDPSTGKTISLDPKTSIVVPQERAGLHAIDVLDPDMIVGRESVYYFHEMIVEMIGWGFEEGKTLFGFGYDFRQSNRLQETLDEFAKKLETVYKASGEKKINVISHSMGGLLVKCFMGLHSDIFEKYVQNW 206          
BLAST of g.arboreum_cottongen_reftransV1_0004832 vs. ExPASy TrEMBL
Match: A2Q294_MEDTR (Lecithin:cholesterol acyltransferase OS=Medicago truncatula GN=MTR_4g083980 PE=4 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 2.495e-107
Identity = 155/207 (74.88%), Postives = 181/207 (87.44%), Query Frame = -2
Query:    2 MAMLLEDILQSVEIWLKLIKKPQP--YVDPNLDPVLLVPGIAGSILTAVDDQNGKEERVWVRILGANYKFRTKLWSRFDPSTGKTESLDPNTTIKVPGGRYGLGAIDVLDPDMIVGRDCVCYFHDMIVEMLKWGFQEGKTLFGFGYDFRQSNRLQETMDRLAEKLELVYEASGGKKINVISHSMGGLLVKCFMGLHSDIFQKYVKNW 616
            M MLLED+L+SVE+WL+LIKKPQP  YV+PNLDPVLLVPG+ GSIL AV++ +G +ERVWVR L A YK +TKLWSR+DPSTGKT +LD  + I VP  R+GL AIDVLDPD+++G + V YFHDMIV+M KWG+QEGKTLFGFGYDFRQSNRLQETMDR AEKLEL+Y A+GGKKI++ISHSMGGLLVKCFM LHSDIF+KYVKNW
Sbjct:    1 MTMLLEDVLRSVELWLRLIKKPQPQAYVNPNLDPVLLVPGVGGSILNAVNESDGSQERVWVRFLSAEYKLKTKLWSRYDPSTGKTVTLDQKSRIVVPEDRHGLHAIDVLDPDLVIGSEAVYYFHDMIVQMQKWGYQEGKTLFGFGYDFRQSNRLQETMDRFAEKLELIYNAAGGKKIDLISHSMGGLLVKCFMTLHSDIFEKYVKNW 207          
BLAST of g.arboreum_cottongen_reftransV1_0004832 vs. ExPASy TrEMBL
Match: R0GPP2_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10007466mg PE=4 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 3.310e-107
Identity = 160/206 (77.67%), Postives = 183/206 (88.83%), Query Frame = -2
Query:    2 MAMLLEDILQSVEIWLKLIKK-PQPYVDPNLDPVLLVPGIAGSILTAVDDQNGKEERVWVRILGANYKFRTKLWSRFDPSTGKTESLDPNTTIKVPGGRYGLGAIDVLDPDMIVGRDCVCYFHDMIVEMLKWGFQEGKTLFGFGYDFRQSNRLQETMDRLAEKLELVYEASGGKKINVISHSMGGLLVKCFMGLHSDIFQKYVKNW 616
            M++LLE+I++SVE  LKL  +  + YVDPNLDPVLLVPGIAGSIL AVD +NGKEERVWVRI GA+++FRTK+WSRFDPSTGKT SLDP T+I VP  R GL AIDVLDPDMIVGR+ V YFH+MIVEML WGF+EGKTLFGFGYDFRQSNRLQET+D  A+KLE VY+ASGGKKIN+ISHSMGGL+VKCFMGLHSDIF+KYV+NW
Sbjct:    1 MSLLLEEIIRSVEALLKLRNRNHETYVDPNLDPVLLVPGIAGSILNAVDHENGKEERVWVRIFGADHEFRTKMWSRFDPSTGKTISLDPKTSIVVPQDRAGLHAIDVLDPDMIVGRESVFYFHEMIVEMLGWGFEEGKTLFGFGYDFRQSNRLQETLDEFAKKLETVYKASGGKKINLISHSMGGLMVKCFMGLHSDIFEKYVQNW 206          
BLAST of g.arboreum_cottongen_reftransV1_0004832 vs. ExPASy TrEMBL
Match: V7CKA7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G098800g PE=4 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 3.975e-107
Identity = 156/207 (75.36%), Postives = 181/207 (87.44%), Query Frame = -2
Query:    2 MAMLLEDILQSVEIWLKLIKKPQP--YVDPNLDPVLLVPGIAGSILTAVDDQNGKEERVWVRILGANYKFRTKLWSRFDPSTGKTESLDPNTTIKVPGGRYGLGAIDVLDPDMIVGRDCVCYFHDMIVEMLKWGFQEGKTLFGFGYDFRQSNRLQETMDRLAEKLELVYEASGGKKINVISHSMGGLLVKCFMGLHSDIFQKYVKNW 616
            M +LL +ILQSVE+WLKLIKKPQP  +V+PNLDPVLLVPG+ GSIL AV D +G +ERVWVR L A YK +TKLWSR+DPSTGKTES+DPN+TI +P  R+GL AID+LDPD+++G + V YFHDMI EM KWGF+EGKTLFGFGYDFRQSNRLQETMDRLA+KLE +Y A+GGKKIN+ISHSMGGLLVKCFM L SDIF+KYVKNW
Sbjct:    1 MTILLGEILQSVELWLKLIKKPQPEAFVNPNLDPVLLVPGVGGSILHAVSDADGSQERVWVRFLSAEYKLKTKLWSRYDPSTGKTESMDPNSTITIPEDRHGLYAIDILDPDLMIGSEGVYYFHDMIFEMRKWGFEEGKTLFGFGYDFRQSNRLQETMDRLADKLESIYNAAGGKKINIISHSMGGLLVKCFMCLQSDIFEKYVKNW 207          
BLAST of g.arboreum_cottongen_reftransV1_0004832 vs. ExPASy TrEMBL
Match: A0A077D826_TOBAC (Lecithine cholesterol acyltransferase-like protein OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 9.412e-107
Identity = 151/205 (73.66%), Postives = 178/205 (86.83%), Query Frame = -2
Query:    2 MAMLLEDILQSVEIWLKLIKKPQPYVDPNLDPVLLVPGIAGSILTAVDDQNGKEERVWVRILGANYKFRTKLWSRFDPSTGKTESLDPNTTIKVPGGRYGLGAIDVLDPDMIVGRDCVCYFHDMIVEMLKWGFQEGKTLFGFGYDFRQSNRLQETMDRLAEKLELVYEASGGKKINVISHSMGGLLVKCFMGLHSDIFQKYVKNW 616
            MA+LLE++++S+E+WLK IKKPQ Y+DP LDPVLLVPGIAGSIL A D + G+ ERVWVRILGA+++F  KLW RFDPSTG+T +LDP+T+I+VP  RYGL AID LDPDM++G DCV YFHDMI EML WG+QEGKTLFGFGYDFRQSNRL ETM+   +KLE ++ ASGGKKIN+ISHSMGGLLVKCFM LHSDIF+KYVKNW
Sbjct:    1 MAVLLEELVKSIEMWLKPIKKPQEYIDPTLDPVLLVPGIAGSILNATDKKTGRTERVWVRILGADHEFCDKLWCRFDPSTGRTANLDPDTSIEVPQDRYGLYAIDTLDPDMVIGSDCVYYFHDMIAEMLSWGYQEGKTLFGFGYDFRQSNRLLETMECFTQKLESIHTASGGKKINIISHSMGGLLVKCFMALHSDIFEKYVKNW 205          
BLAST of g.arboreum_cottongen_reftransV1_0004832 vs. ExPASy Swiss-Prot
Match: LCAT4_ARATH (Lecithin-cholesterol acyltransferase-like 4 OS=Arabidopsis thaliana GN=LCAT4 PE=1 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 5.358e-109
Identity = 160/206 (77.67%), Postives = 183/206 (88.83%), Query Frame = -2
Query:    2 MAMLLEDILQSVEIWLKLIKKPQ-PYVDPNLDPVLLVPGIAGSILTAVDDQNGKEERVWVRILGANYKFRTKLWSRFDPSTGKTESLDPNTTIKVPGGRYGLGAIDVLDPDMIVGRDCVCYFHDMIVEMLKWGFQEGKTLFGFGYDFRQSNRLQETMDRLAEKLELVYEASGGKKINVISHSMGGLLVKCFMGLHSDIFQKYVKNW 616
            M++LLE+I++SVE  LKL  + Q PYVDPNL+PVLLVPGIAGSIL AVD +NG EERVWVRI GA+++FRTK+WSRFDPSTGKT SLDP T+I VP  R GL AIDVLDPDMIVGR+ V YFH+MIVEM+ WGF+EGKTLFGFGYDFRQSNRLQET+D+ A+KLE VY+ASG KKINVISHSMGGLLVKCFMGLHSDIF+KYV+NW
Sbjct:    1 MSLLLEEIIRSVEALLKLRNRNQEPYVDPNLNPVLLVPGIAGSILNAVDHENGNEERVWVRIFGADHEFRTKMWSRFDPSTGKTISLDPKTSIVVPQDRAGLHAIDVLDPDMIVGRESVYYFHEMIVEMIGWGFEEGKTLFGFGYDFRQSNRLQETLDQFAKKLETVYKASGEKKINVISHSMGGLLVKCFMGLHSDIFEKYVQNW 206          
BLAST of g.arboreum_cottongen_reftransV1_0004832 vs. ExPASy Swiss-Prot
Match: LCAT3_ARATH (Phospholipase A(1) LCAT3 OS=Arabidopsis thaliana GN=LCAT3 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 9.070e-51
Identity = 94/179 (52.51%), Postives = 119/179 (66.48%), Query Frame = -2
Query:    2 DPVLLVPGIAGSILTAVDDQNGKEERVWVRILGANYKFRTKLWSRFDPSTGKTESLDPNTTIKVPGGRYGLGAIDVLDPDMIVGRDC----VCYFHDMIVEMLKWGFQEGKTLFGFGYDFRQSNRLQETMDRLAEKLELVYEASGGKKINVISHSMGGLLVKCFMGLHSDIFQKYVKNW 526
            DPVLLV GI GSIL +    +  E RVWVRI  AN  F+  LWS ++P TG TE LD N  + VP   +GL AID+LDP   V + C    V +FHDMI  ++  G+++G TLFG+GYDFRQSNR+   +  L +KLE  Y+ SGG+K+ +ISHSMGGL+V CFM LH + F KYV  W
Sbjct:   24 DPVLLVSGIGGSILHSKKKNSKSEIRVWVRIFLANLAFKQSLWSLYNPKTGYTEPLDDNIEVLVPDDDHGLYAIDILDPSWFV-KLCHLTEVYHFHDMIEMLVGCGYKKGTTLFGYGYDFRQSNRIDLLILGLKKKLETAYKRSGGRKVTIISHSMGGLMVSCFMYLHPEAFSKYVNKW 201          
BLAST of g.arboreum_cottongen_reftransV1_0004832 vs. ExPASy Swiss-Prot
Match: PDAT2_ARATH (Putative phospholipid:diacylglycerol acyltransferase 2 OS=Arabidopsis thaliana GN=PDAT2 PE=3 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 5.116e-7
Identity = 56/170 (32.94%), Postives = 74/170 (43.53%), Query Frame = -2
Query:   44 PVLLVPGIAGSILTAVDDQNGKEERVWVRILGANYK--FRTKLWSRFDPSTGKTESLDPN--TTIKVPGGRYGLGAIDVLDPDMIVGRDCVCYFH--DMIVEMLKWGFQEGKTLFGFGYDFRQSNRLQETMD----RLAEKLELVYEASGGKKINVISHSMGGLLVKCFM 523
            PV+LVPGI    L   + +   E     R+ GA++    R  L      S      LDP+      VPG    L A D   P         CYF    +I  + K G+ EGK L    YD+R S    E  D    RL  K+EL+Y  +G KK+ V+ HSMG +    F+
Sbjct:   92 PVILVPGIVTGGLELWEGRPCAEGLFRKRLWGASFSEILRRPLCWLEHLSLDSETGLDPSGIRVRAVPG----LVAADYFAP---------CYFAWAVLIENLAKIGY-EGKNLHMASYDWRLSFHNTEVRDQSLSRLKSKIELMYATNGFKKVVVVPHSMGAIYFLHFL 247          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0004832 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
D7MG79_ARALL1.491e-10778.16Lecithin:cholesterol acyltransferase family protei... [more]
A2Q294_MEDTR2.495e-10774.88Lecithin:cholesterol acyltransferase OS=Medicago t... [more]
R0GPP2_9BRAS3.310e-10777.67Uncharacterized protein OS=Capsella rubella GN=CAR... [more]
V7CKA7_PHAVU3.975e-10775.36Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
A0A077D826_TOBAC9.412e-10773.66Lecithine cholesterol acyltransferase-like protein... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0004832 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LCAT4_ARATH5.358e-10977.67Lecithin-cholesterol acyltransferase-like 4 OS=Ara... [more]
LCAT3_ARATH9.070e-5152.51Phospholipase A(1) LCAT3 OS=Arabidopsis thaliana G... [more]
PDAT2_ARATH5.116e-732.94Putative phospholipid:diacylglycerol acyltransfera... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 149..169
NoneNo IPR availablePANTHERPTHR11440LECITHIN-CHOLESTEROL ACYLTRANSFERASE-RELATEDcoord: 1..205
NoneNo IPR availablePANTHERPTHR11440:SF3LECITHIN-CHOLESTEROL ACYLTRANSFERASE-LIKE 4coord: 1..205
IPR029058Alpha/Beta hydrolase foldGENE3D3.40.50.1820coord: 31..48
e-value: 2.0E-14
score: 53.5
coord: 118..200
e-value: 2.0E-14
score: 53.5
IPR029058Alpha/Beta hydrolase foldSUPERFAMILY53474alpha/beta-Hydrolasescoord: 120..200
coord: 27..44
IPR003386Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferasePFAMPF02450LCATcoord: 76..193
e-value: 5.1E-17
score: 62.0

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0004832 ID=g.arboreum_cottongen_reftransV1_0004832; Name=g.arboreum_cottongen_reftransV1_0004832; organism=Gossypium arboreum; type=contig; length=797bp
TCCAATTCTTCACGTATTTCTGAAAAATATCGCTGTGAAGGCCCATGAAA
CATTTTACCAAAAGGCCGCCCATCGAGTGACTTATAACATTTATCTTCTT
CCCTCCTGAAGCTTCATATACCAACTCTAATTTCTCTGCCAGCCGATCCA
TTGTTTCTTGCAACCTATTACTTTGGCGAAAATCATAACCAAACCCAAAG
AGTGTTTTCCCTTCTTGGAAACCCCATTTGAGCATTTCAACAATCATATC
GTGAAAATAACAAACACAGTCACGTCCCACGATCATATCAGGGTCCAATA
CATCAATGGCGCCCAGGCCATATCTTCCTCCAGGGACTTTAATAGTTGTA
TTTGGATCCAAAGATTCAGTTTTACCAGTAGAAGGATCAAAACGAGACCA
GAGCTTGGTCCGGAACTTGTAATTGGCACCGAGAATCCGAACCCATACCC
GTTCTTCTTTACCATTCTGATCATCCACGGCAGTCAAAATCGAGCCGGCG
ATACCCGGAACTAATAAAACCGGGTCCAAATTCGGGTCGACGTAAGGTTG
GGGTTTCTTTATCAGCTTCAACCATATCTCCACCGATTGTAAAATATCTT
CCAACAACATCGCCATCCCAAATCAAAAACTAATTACAATTTCCCAAAAA
AAAATAAAATAAAAAAAGGAAAGAATATGTGATTAAATATTTAAGAAATG
TGAAATTACTATGGGGAAATTGAGATTTTTTTTTATTTTAGGGTTTGAGA
TTTCGGAGGGGAAAGAGTTTATCACGTAGAGTTAAAGAGGAGGAAAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR029058AB_hydrolase
IPR003386LACT/PDAT_acylTrfase
Vocabulary: Molecular Function
TermDefinition
GO:0008374O-acyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006629lipid metabolic process