g.arboreum_cottongen_reftransV1_0016633, g.arboreum_cottongen_reftransV1_0016633 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0016633 vs. ExPASy TrEMBL
Match: A0A0B0MYW9_GOSAR (Epidermal growth factor receptor OS=Gossypium arboreum GN=F383_32069 PE=4 SV=1) HSP 1 Score: 318.546 bits (815), Expect = 1.346e-103 Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 3 Query: 3 ATEHYNFVSDGSPRGMFGGPPQHPGTFHRVWNPSNTSSYGKLPNPGFSPADGRSFNYGAARPQMFGRNPILDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFHGHSSASNKMLGPECYFDESMLKDPWQHLKPIPWRRQEAGMDSLGAPGTSNSSGIKRAKVSEASSKQSLAEYLAASFNKAVEGTE 584 ATEHYNFVSDGSPRGMFGGPPQHPGTFHRVWNPSNTSSYGKLPNPGFSPADGRSFNYGAARPQMFGRNPILDQRPGSSPSFSPGRGRGPGYRGSSGPGLGRSAGRGQGFHGHSSASNKMLGPECYFDESMLKDPWQHLKPIPWRRQEAGMDSLGAPGTSNSSGIKRAKVSEASSKQSLAEYLAASFNKAVEGTE Sbjct: 139 ATEHYNFVSDGSPRGMFGGPPQHPGTFHRVWNPSNTSSYGKLPNPGFSPADGRSFNYGAARPQMFGRNPILDQRPGSSPSFSPGRGRGPGYRGSSGPGLGRSAGRGQGFHGHSSASNKMLGPECYFDESMLKDPWQHLKPIPWRRQEAGMDSLGAPGTSNSSGIKRAKVSEASSKQSLAEYLAASFNKAVEGTE 332
BLAST of g.arboreum_cottongen_reftransV1_0016633 vs. ExPASy TrEMBL
Match: A0A0D2QT54_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G346500 PE=4 SV=1) HSP 1 Score: 307.76 bits (787), Expect = 1.553e-99 Identity = 186/194 (95.88%), Postives = 188/194 (96.91%), Query Frame = 3 Query: 3 ATEHYNFVSDGSPRGMFGGPPQHPGTFHRVWNPSNTSSYGKLPNPGFSPADGRSFNYGAARPQMFGRNPILDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFHGHSSASNKMLGPECYFDESMLKDPWQHLKPIPWRRQEAGMDSLGAPGTSNSSGIKRAKVSEASSKQSLAEYLAASFNKAVEGTE 584 ATEHYNFVSDGSPRGMFGGPPQHPGTFHRVWNPSNTSSYG LPNPG SPADGR+FNYGAARPQMFGRNPILDQRPG SP+FSPGRGRGPGYRGS GPGLGRSAGRGQGFHG SSASNKMLGPECYFDESMLKDPWQHLKPIPWRRQEAGMDSLG PGTSNSSGIKRAKVSEASSKQSLAEYLAASFNKAVEGTE Sbjct: 138 ATEHYNFVSDGSPRGMFGGPPQHPGTFHRVWNPSNTSSYGNLPNPGISPADGRNFNYGAARPQMFGRNPILDQRPGGSPNFSPGRGRGPGYRGSGGPGLGRSAGRGQGFHGRSSASNKMLGPECYFDESMLKDPWQHLKPIPWRRQEAGMDSLGTPGTSNSSGIKRAKVSEASSKQSLAEYLAASFNKAVEGTE 331
BLAST of g.arboreum_cottongen_reftransV1_0016633 vs. ExPASy TrEMBL
Match: A0A061FFF7_THECC (Hydroxyproline-rich glycoprotein family protein, putative isoform 2 OS=Theobroma cacao GN=TCM_034520 PE=4 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 7.259e-49 Identity = 123/200 (61.50%), Postives = 138/200 (69.00%), Query Frame = 3 Query: 12 HYNFVSDGSPRGMFGGPPQHPGTFHRVWNPSNTSSYGKLPNPGFSPADGRSFNYGAARPQMFGRNPILDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFHGHSSASNKMLGPECYFDESMLKDPWQHLKPIPWRRQEAGMDSLGAPGTSN-----SSGIKRAKVSEASSK----QSLAEYLAASFNKAVEGTE 584 +Y+ SDGSP GMFG P HPGT R WNPSN S Y P PGFSPAD YG RPQ FG P+ G S S GRGRG GY GS G+GRS GRG GFHGHSSASN+M+GPE ++DESML+DPWQHLKP+ WRR+EAGMDSL P +SN S K+ KVSEAS+K SLAEYLAASFNKAVE T+ Sbjct: 147 YYSSASDGSPGGMFGTPLMHPGTTPRFWNPSNASRYSNSPTPGFSPAD---IPYGRGRPQQFGNYPLPSPGHGGSLGLSSGRGRGRGYGGSITHGIGRSGGRGLGFHGHSSASNRMMGPESFYDESMLEDPWQHLKPVLWRRREAGMDSLSNPDSSNSWFPKSISAKKVKVSEASNKFNSQLSLAEYLAASFNKAVEDTK 343
BLAST of g.arboreum_cottongen_reftransV1_0016633 vs. ExPASy TrEMBL
Match: A0A061FEH0_THECC (Hydroxyproline-rich glycoprotein family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_034520 PE=4 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 1.179e-48 Identity = 123/200 (61.50%), Postives = 138/200 (69.00%), Query Frame = 3 Query: 12 HYNFVSDGSPRGMFGGPPQHPGTFHRVWNPSNTSSYGKLPNPGFSPADGRSFNYGAARPQMFGRNPILDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFHGHSSASNKMLGPECYFDESMLKDPWQHLKPIPWRRQEAGMDSLGAPGTSN-----SSGIKRAKVSEASSK----QSLAEYLAASFNKAVEGTE 584 +Y+ SDGSP GMFG P HPGT R WNPSN S Y P PGFSPAD YG RPQ FG P+ G S S GRGRG GY GS G+GRS GRG GFHGHSSASN+M+GPE ++DESML+DPWQHLKP+ WRR+EAGMDSL P +SN S K+ KVSEAS+K SLAEYLAASFNKAVE T+ Sbjct: 170 YYSSASDGSPGGMFGTPLMHPGTTPRFWNPSNASRYSNSPTPGFSPAD---IPYGRGRPQQFGNYPLPSPGHGGSLGLSSGRGRGRGYGGSITHGIGRSGGRGLGFHGHSSASNRMMGPESFYDESMLEDPWQHLKPVLWRRREAGMDSLSNPDSSNSWFPKSISAKKVKVSEASNKFNSQLSLAEYLAASFNKAVEDTK 366
BLAST of g.arboreum_cottongen_reftransV1_0016633 vs. ExPASy TrEMBL
Match: E0CRX4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g07660 PE=4 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 7.575e-14 Identity = 81/193 (41.97%), Postives = 105/193 (54.40%), Query Frame = 3 Query: 63 PQHPGTFHRVWN----------PSNTSSYGKLPNPGFSPADGRSFNYGAARPQMFGRNPILDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFHGHSSASNKMLGPECYFDESMLKDPWQHLKPIPWRRQEAGMDSLGAPGTSNSS---------GIKRAKVSEA----SSKQSLAEYLAASFNKAV 572 P H GT VWN PSN+ G P+PGF P SF G R F +P G S S + GRGR + S PG GR GRG GFH H SA ++ PE ++++SM++DPW+ LKP+ W R++A LG G ++ S +K+ +VSEA SS+QSLAEYLAASFN+AV Sbjct: 157 PAHQGT-PGVWNGSNGMPRYGVPSNSPRGGNFPSPGFRPVGSPSFRSGRGRGHWFNNSPSPVSGRGGSSSPNSGRGRSGWFGNSMSPGSGRGRGRGLGFHAHVSAQDR---PELFYNKSMVEDPWKFLKPVIWSREKA----LGKMGNASDSPKSWLPKSINMKKTRVSEATNESSSQQSLAEYLAASFNEAV 341
BLAST of g.arboreum_cottongen_reftransV1_0016633 vs. ExPASy TrEMBL
Match: M5XUP9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016470mg PE=4 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.175e-12 Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 3 Query: 342 SASNKMLGPECYFDESMLKDPWQHLKPIPWRRQEAGMDSLGAPGTS-----NSSGIKRAKVSEASSKQ----SLAEYLAASFNKAVEGT 581 S K LGPE Y+++SM++DPW+ LKP+ W+ + M +PG+S NSS K A +SE S+K SLAEYLAASFN AV+ T Sbjct: 307 STMEKQLGPERYYNDSMVEDPWKFLKPVIWKGVDTPMKRFYSPGSSKPPIENSSSTKDAIISEGSNKSTSQPSLAEYLAASFNDAVKDT 395
BLAST of g.arboreum_cottongen_reftransV1_0016633 vs. ExPASy TrEMBL
Match: W9SMI8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000896 PE=4 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.902e-12 Identity = 39/82 (47.56%), Postives = 57/82 (69.51%), Query Frame = 3 Query: 351 NKMLGPECYFDESMLKDPWQHLKPIPWRRQEAGMDSLGAPGTSN-----SSGIKRAKVSEASSKQ----SLAEYLAASFNKA 569 ++ LGPE ++DESM++D W+ L+P+ WR +A + SL P +S S G K+AKVS+++SK SLAEYLAASF++A Sbjct: 258 DRQLGPERFYDESMIEDAWKFLEPVVWREVDASLSSLSTPDSSKSWITRSLGAKKAKVSDSTSKSGSQPSLAEYLAASFDEA 339
BLAST of g.arboreum_cottongen_reftransV1_0016633 vs. ExPASy TrEMBL
Match: B9RJY3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1039650 PE=4 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.443e-12 Identity = 63/157 (40.13%), Postives = 82/157 (52.23%), Query Frame = 3 Query: 132 NPGFSPADGRSFNYGAARPQMFGRNPILDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFHGHSSASNKMLGPECYFDESMLKDPWQHLKPIPWRRQEAGMDSLGAPGTSNS---SGIKRAK------VSEASSKQSLAEYLAASFNKAVE 575 NPGF PA SFNYG RP G +P S GRG G S G +GFH A + GPE ++++SM++DPW+ L+P+ W+ LG PG+SNS I R K + ++SKQSLAEYLAASFN+AV+ Sbjct: 261 NPGFQPAGSPSFNYGQGRPPWSGNSP---SPRSVHGGSSTYSGRGQGQWHGSSRGQISGQSGRRGFHSRGPAPGEAFGPESFYEKSMVEDPWKQLEPVVWKM-------LGVPGSSNSWLPKSISRKKPRPSESSNNSNSKQSLAEYLAASFNEAVK 407
BLAST of g.arboreum_cottongen_reftransV1_0016633 vs. ExPASy TrEMBL
Match: A0A067H0Z1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022755mg PE=4 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.440e-11 Identity = 91/214 (42.52%), Postives = 116/214 (54.21%), Query Frame = 3 Query: 3 ATEHYNFVSDG--SPRGM---FGGPPQHPGTFHRVWN----------PSNTSSYGKLPNPGFSPADGRSFNYGAARPQMFGRNPILDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFHGHSSASNKMLGPECYFDESMLKDPWQHLKPIPWRRQEAGMDSLGAPGTSN-----SSGIKRAKVSEA----SSKQSLAEYLAASFNKAV 572 T HY+ G SPRGM F G H GT WN PS S G++ +P F P +F YG RPQ GR+P G SP S GRGRG Y S PGLG S GRG+G H ++ GPEC++D+SM +DPWQ L+P+ W+ + + +PG+SN S +K+ +VSEA SS+ SLAEYLAASFN+A Sbjct: 81 TTSHYSPTIYGQRSPRGMASPFTG--IHQGT-PESWNGSGGTARYNSPSTASGGGQIFSPSFGPVRSPTFGYGQGRPQWQGRSPSPGSGRGGSPGPSSGRGRGRWYGSSVSPGLGCSGGRGRGLHSRGFGADGKQGPECFYDKSMDEDPWQELEPLAWKSR-----NFKSPGSSNSWFPKSISMKKPRVSEASRQSSSQPSLAEYLAASFNEAT 286
BLAST of g.arboreum_cottongen_reftransV1_0016633 vs. ExPASy TrEMBL
Match: V4SH86_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001506mg PE=4 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 4.535e-11 Identity = 91/214 (42.52%), Postives = 116/214 (54.21%), Query Frame = 3 Query: 3 ATEHYNFVSDG--SPRGM---FGGPPQHPGTFHRVWN----------PSNTSSYGKLPNPGFSPADGRSFNYGAARPQMFGRNPILDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFHGHSSASNKMLGPECYFDESMLKDPWQHLKPIPWRRQEAGMDSLGAPGTSN-----SSGIKRAKVSEA----SSKQSLAEYLAASFNKAV 572 T HY+ G SPRGM F G H GT WN PS S G++ +P F P +F YG RPQ GR+P G SP S GRGRG Y S PGLG S GRG+G H ++ GPEC++D+SM +DPWQ L+P+ W+ + + +PG+SN S +K+ +VSEA SS+ SLAEYLAASFN+A Sbjct: 168 TTIHYSPTIYGQRSPRGMASPFTG--IHQGT-PESWNGSGGTARYNSPSTASGGGQIFSPSFGPVRSPTFGYGQGRPQWQGRSPSPGSGRGGSPGPSSGRGRGRWYGSSVSPGLGCSGGRGRGLHSRGFGADGKQGPECFYDKSMDEDPWQELEPLAWKSR-----NFKSPGSSNSWFPKSISMKKPRVSEASRQSSSQPSLAEYLAASFNEAT 373 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0016633 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 20
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BLAST of g.arboreum_cottongen_reftransV1_0016633 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0016633 ID=g.arboreum_cottongen_reftransV1_0016633; Name=g.arboreum_cottongen_reftransV1_0016633; organism=Gossypium arboreum; type=contig; length=930bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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