g.arboreum_cottongen_reftransV1_0016633, g.arboreum_cottongen_reftransV1_0016633 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0016633
Unique Nameg.arboreum_cottongen_reftransV1_0016633
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length930
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr1chromosomeg.arboreum_cottongen_reftransV1_0016633:1..930 .
Chr1:129885010..129885939 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0016633 vs. ExPASy TrEMBL
Match: B9H6U3_POPTR (Hydroxyproline-rich glycoprotein OS=Populus trichocarpa GN=POPTR_0005s19660g PE=4 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.912e-10
Identity = 37/84 (44.05%), Postives = 54/84 (64.29%), Query Frame = 3
Query:  330 HGHSSASNKMLGPECYFDESMLKDPWQHLKPIPWRRQEAGMDSLGAPGTSN-----SSGIKRAKVSEASSKQ----SLAEYLAA 554
            H    A N+  GPEC++D SM++DPWQHL+P+ W   +   ++L  PG+SN     S  +K++ V+E+S+K     SLAEYLAA
Sbjct:  248 HSRGFAPNEAQGPECFYDNSMVEDPWQHLEPVLWSGLDDWGNNLNGPGSSNSLLPKSISMKKSSVAESSNKSTSGVSLAEYLAA 331          
BLAST of g.arboreum_cottongen_reftransV1_0016633 vs. ExPASy TrEMBL
Match: A0A067LAF3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15897 PE=4 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 2.975e-8
Identity = 60/152 (39.47%), Postives = 83/152 (54.61%), Query Frame = 3
Query:  132 NPGFSPADGRSFNYGAARPQ--MFGRNPILDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFHGHSSASNKMLGPECYFDESMLKDPWQHLKPIPWRRQEAGMDSLGAPGTSNSSGIKRAKV---SEASSKQSLAEYLAASFNKAV 572
            NP F P    SFNYG  RP     G NP          S   GRG+G  +  S     GR+ GRG+GF+ H   S+  L  E ++D+SM++DPWQ L+P+ W+    G+D         S+ +K+ +V   S  SS Q+LAEYLAA+FN++V
Sbjct:  189 NPNFQPEGNHSFNYGQGRPLSPRIGNNPYFG-SGRGGSSTHSGRGQGQWHGSSRSQVSGRNGGRGRGFYSHGIGSDAALRAESFYDKSMVEDPWQRLEPVLWK----GLDGSSDSWLPKSASMKKPRVSESSNKSSSQNLAEYLAAAFNESV 335          
BLAST of g.arboreum_cottongen_reftransV1_0016633 vs. ExPASy TrEMBL
Match: B9RJY4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1039660 PE=4 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 4.245e-8
Identity = 58/147 (39.46%), Postives = 77/147 (52.38%), Query Frame = 3
Query:  132 NPGFSPADGRSFNYGAARPQMFGRNPILDQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFHGHSSASNKMLGPECYFDESMLKDPWQHLKPIPWRRQEAGMDSLGAPGTSNS---SGIKRAK------VSEASSKQSLAEY 545
            NPGF PA   SFNYG  RP   G NP   +      S    RG+G  +  + G   G+S  RG+GFH    AS +  GPE + D+SM++DPW+ L+P+ W+  E        P +SNS     I R K       + ++SKQSLAEY
Sbjct:   83 NPGFQPARSPSFNYGQGRPPWSGNNPC-PRSVHGGSSTYSRRGQGQWHGSNRGQISGQSGRRGRGFHSRGPASGEAFGPESFHDKSMVEDPWKQLEPVVWKMLE-------VPRSSNSWLPKSISRKKPRPSEPSNNSNSKQSLAEY 221          
BLAST of g.arboreum_cottongen_reftransV1_0016633 vs. ExPASy TrEMBL
Match: I1MB09_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2)

HSP 1 Score: 63.1586 bits (152), Expect = 5.290e-8
Identity = 35/95 (36.84%), Postives = 54/95 (56.84%), Query Frame = 3
Query:  327 FHGHSSASNKMLGPECYFDESMLKDPWQHLKPIPWRRQEAGMDSLGAP---------GTSNSSGIKRAKVSEASSKQSLAEYLAASFNKAVEGTE 584
            FHGH S  N   GP+ +++ SM++DPW+HL+PI W+  +  +++   P          TS       A   ++SS+ SLAEYLA++FN+A    E
Sbjct:  266 FHGHRSNENTARGPDRFYNRSMVEDPWEHLEPIIWKANDGYLNTSRIPLNSQPWISKATSTKGEGSSAASVKSSSEPSLAEYLASAFNEAANDAE 360          
BLAST of g.arboreum_cottongen_reftransV1_0016633 vs. ExPASy TrEMBL
Match: A0A0B2RZR4_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_009338 PE=4 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 5.490e-8
Identity = 35/95 (36.84%), Postives = 54/95 (56.84%), Query Frame = 3
Query:  327 FHGHSSASNKMLGPECYFDESMLKDPWQHLKPIPWRRQEAGMDSLGAP---------GTSNSSGIKRAKVSEASSKQSLAEYLAASFNKAVEGTE 584
            FHGH S  N   GP+ +++ SM++DPW+HL+PI W+  +  +++   P          TS       A   ++SS+ SLAEYLA++FN+A    E
Sbjct:  248 FHGHRSNENTARGPDRFYNRSMVEDPWEHLEPIIWKANDGYLNTSRIPLNSQPWISKATSTKGEGSSAASVKSSSEPSLAEYLASAFNEAANDAE 342          
BLAST of g.arboreum_cottongen_reftransV1_0016633 vs. ExPASy TrEMBL
Match: A0A0B2R1K7_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_019468 PE=4 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 7.984e-8
Identity = 35/101 (34.65%), Postives = 55/101 (54.46%), Query Frame = 3
Query:  327 FHGHSSASNKMLGPECYFDESMLKDPWQHLKPIPWRRQEAGMDSLGAPGTSNSSGIKRAKVSEASSKQ---------------SLAEYLAASFNKAVEGTE 584
            FHGH S  N + GP+ ++  SM++DPW+HL+PI W+  +  +++   P  S      +  +S+ASS +               SLAEYLA++FN+A    E
Sbjct:  247 FHGHRSNENTVHGPDRFYKRSMVEDPWEHLEPIIWKANDGYLNTSRVPLNS------QPWISKASSTKGEGSSAASVKSSSEPSLAEYLASAFNEAANDAE 341          
BLAST of g.arboreum_cottongen_reftransV1_0016633 vs. ExPASy TrEMBL
Match: K7K9X7_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 7.984e-8
Identity = 35/101 (34.65%), Postives = 55/101 (54.46%), Query Frame = 3
Query:  327 FHGHSSASNKMLGPECYFDESMLKDPWQHLKPIPWRRQEAGMDSLGAPGTSNSSGIKRAKVSEASSKQ---------------SLAEYLAASFNKAVEGTE 584
            FHGH S  N + GP+ ++  SM++DPW+HL+PI W+  +  +++   P  S      +  +S+ASS +               SLAEYLA++FN+A    E
Sbjct:  247 FHGHRSNENTVHGPDRFYKRSMVEDPWEHLEPIIWKANDGYLNTSRVPLNS------QPWISKASSTKGEGSSAASVKSSSEPSLAEYLASAFNEAANDAE 341          
BLAST of g.arboreum_cottongen_reftransV1_0016633 vs. ExPASy TrEMBL
Match: A0A022RX99_ERYGU (Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a022534mg PE=4 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 1.019e-7
Identity = 33/77 (42.86%), Postives = 50/77 (64.94%), Query Frame = 3
Query:  366 PECYFDESMLKDPWQHLKPIPWRRQEAGMDSLGAPGT--SNSSGIKRAKVSEASSK-----QSLAEYLAASFNKAVE 575
            P+ Y+ + M++DPW+ L P+ W+    G+D+LG+  +    S  +KRAKVS  ++K     QSLAEYLAASFN + +
Sbjct:  176 PDLYYRKEMVEDPWKMLTPVIWK----GVDALGSDQSWLPKSIAVKRAKVSPEAAKTSISQQSLAEYLAASFNDSTD 248          
BLAST of g.arboreum_cottongen_reftransV1_0016633 vs. ExPASy TrEMBL
Match: V4MEG9_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10025760mg PE=4 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 8.312e-7
Identity = 33/76 (43.42%), Postives = 48/76 (63.16%), Query Frame = 3
Query:  360 LGPECYFDESMLKDPWQHLKPIPWRRQEAGMDSLGAPGTSNSSGIKRAKVSEAS-----SKQSLAEYLAASFNKAV 572
            LG E ++  SM +DPW++LKP+ W+    G  S  + G +NS   K+  +SEAS     ++QSLAEYLAAS ++A 
Sbjct:  237 LGAERFYSNSMAEDPWKYLKPVLWKSCSDGASS-NSTGQANSVAPKKPMISEASHTPSKNQQSLAEYLAASLDEAT 311          
BLAST of g.arboreum_cottongen_reftransV1_0016633 vs. ExPASy TrEMBL
Match: A0A059AU65_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00032 PE=4 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 9.387e-7
Identity = 37/89 (41.57%), Postives = 53/89 (59.55%), Query Frame = 3
Query:  354 KMLGPECYFDESMLKDPWQHLKPIPWRRQEAGMDS---------LGAPGTSNSSGIKRAKVSEASSK----QSLAEYLAASFNKAVEGT 581
            + LGPE +F ESML+DPW+ LKP+ WR    G+DS           +P    S   K+ +V+E+ +K     +LAE+LAASFN+ V+ T
Sbjct:  240 RPLGPERFFHESMLEDPWKDLKPVLWR----GVDSPFVGSSSRGSSSPWMPESIRPKKPRVAESPNKFGSGLNLAEFLAASFNETVKET 324          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0016633 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 20
Match NameE-valueIdentityDescription
B9H6U3_POPTR2.912e-1044.05Hydroxyproline-rich glycoprotein OS=Populus tricho... [more]
A0A067LAF3_JATCU2.975e-839.47Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
B9RJY4_RICCO4.245e-839.46Putative uncharacterized protein OS=Ricinus commun... [more]
I1MB09_SOYBN5.290e-836.84Uncharacterized protein OS=Glycine max PE=4 SV=2[more]
A0A0B2RZR4_GLYSO5.490e-836.84Uncharacterized protein OS=Glycine soja GN=glysoja... [more]
A0A0B2R1K7_GLYSO7.984e-834.65Uncharacterized protein OS=Glycine soja GN=glysoja... [more]
K7K9X7_SOYBN7.984e-834.65Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A022RX99_ERYGU1.019e-742.86Uncharacterized protein (Fragment) OS=Erythranthe ... [more]
V4MEG9_EUTSA8.312e-743.42Uncharacterized protein OS=Eutrema salsugineum GN=... [more]
A0A059AU65_EUCGR9.387e-741.57Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0016633 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028265M-phase-specific PLK1-interacting protein-likePFAMPF15502MPLKIPcoord: 91..126
e-value: 1.7E-7
score: 31.2
NoneNo IPR availablePANTHERPTHR36054:SF1HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEINcoord: 41..179
NoneNo IPR availablePANTHERPTHR36054FAMILY NOT NAMEDcoord: 41..179

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0016633 ID=g.arboreum_cottongen_reftransV1_0016633; Name=g.arboreum_cottongen_reftransV1_0016633; organism=Gossypium arboreum; type=contig; length=930bp
AGGCCACTGAACATTATAACTTTGTTTCTGATGGAAGTCCAAGAGGAATG
TTTGGTGGTCCTCCCCAGCATCCTGGAACTTTTCATAGGGTCTGGAATCC
CTCTAATACATCAAGCTATGGTAAATTACCTAACCCCGGCTTTTCTCCAG
CAGATGGTCGTAGTTTCAATTATGGAGCAGCCAGGCCACAAATGTTTGGT
AGAAATCCAATCCTTGATCAAAGACCTGGAAGTAGTCCTAGTTTCAGTCC
AGGAAGAGGCAGGGGTCCTGGATACCGAGGGAGCAGTGGTCCTGGTTTAG
GAAGGAGTGCTGGACGAGGGCAAGGCTTTCATGGTCATAGCTCAGCATCA
AACAAGATGTTAGGGCCAGAGTGTTACTTTGATGAATCCATGTTGAAAGA
TCCTTGGCAGCATTTAAAACCTATTCCATGGAGAAGACAAGAAGCTGGAA
TGGATAGTTTGGGTGCACCAGGCACTTCGAACTCCAGTGGCATAAAAAGG
GCAAAAGTTTCAGAGGCTTCTTCTAAACAAAGTCTTGCTGAATACCTTGC
TGCTTCATTCAACAAAGCTGTTGAAGGCACAGAATGAAGGTTGCTCAAAT
CTGAAATGAATGGCAATGTAGAAGAGATCTGTTATGACCATTTAGGTGAT
ATTTGGATTCCATTATTGAGGCTTGAAGATGGGGTGGCTGAAGGCATGAA
TGTGGATATACATATTTTTCGGATAACAATATTGGGGTAGACATTCTGAG
ATGGTTATCGCCCATTCTCATTAATCTCACCAGTCCTATCTCGGGATTCA
AATTCTAAATTCTAAAATTTGATAACAATATTTTTCTATGTTCAGGACTG
GTGGGATATTTTCTCATAGTATTCTTGTCAGAAAATATTATCATGTGAAT
TATCTTAATAATAACAACACAGTTTCCGCA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR028265TTDN1/SICKLE