g.arboreum_cottongen_reftransV1_0018556, g.arboreum_cottongen_reftransV1_0018556 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0018556
Unique Nameg.arboreum_cottongen_reftransV1_0018556
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1594
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr6chromosomeg.arboreum_cottongen_reftransV1_0018556:1..1564 .
Chr6:32237047..32239472 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy TrEMBL
Match: A0A0D2R616_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G008400 PE=4 SV=1)

HSP 1 Score: 552.362 bits (1422), Expect = 0.000e+0
Identity = 300/317 (94.64%), Postives = 306/317 (96.53%), Query Frame = -2
Query:  640 SLSQEKHSLANQLFSKHSRSQLCDACDGSPASIFCETEQSVFCSNCDWESHKFSSSSLHNRRPIEGFTGCPSVNELVSIVGIEDLGEKKXXXXXXXXXXXXXXLSWENPVIXXXXXXXXXXXXDHGFKPTDVLPLPKNRNAHCGQHKEEVLHQLRELAKSEPILSFDNTGDLQTGTVHTSCTNDTAPIPFPAYESSALRFFGDNVEMTDQVFVPFSELRGHPEECAVVPDKHLGSSRTIPVSDSLGNQQHQIDTGTVSALPKVAVHELNSQERDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAKVEH 1590
            S  +E HS ANQLFSKHSRSQLCDACDGSPASIFCETEQSVFCSNCDWESHKFS+SSLHNRRPIEGFTGCPSVNELVS VGIED+GEKKGGDDCGYDDGWLDLLSWENPVISSFDDLLVSSDSDHGFKPTDVLPLPKNRNA+CGQHKEEVLHQLRELAKSEP LSFDNT DLQTGTVHTSCTNDTAPI FPAYESSALRFFGDNVEMTD+VFVPFSELRGH EECAVVPDKHLGSSRTIPVSDSLGNQQHQID GTVSALPKVAVHELNSQERDSAISRYKEKRKTRRFDKHIRYESRKVRAESR RIKGRFAK+EH
Sbjct:   37 SCDREVHS-ANQLFSKHSRSQLCDACDGSPASIFCETEQSVFCSNCDWESHKFSTSSLHNRRPIEGFTGCPSVNELVSFVGIEDVGEKKGGDDCGYDDGWLDLLSWENPVISSFDDLLVSSDSDHGFKPTDVLPLPKNRNANCGQHKEEVLHQLRELAKSEPTLSFDNTDDLQTGTVHTSCTNDTAPISFPAYESSALRFFGDNVEMTDKVFVPFSELRGHTEECAVVPDKHLGSSRTIPVSDSLGNQQHQIDAGTVSALPKVAVHELNSQERDSAISRYKEKRKTRRFDKHIRYESRKVRAESRARIKGRFAKLEH 352          
BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy TrEMBL
Match: A0A061DQF5_THECC (B-box type zinc finger protein with CCT domain, putative OS=Theobroma cacao GN=TCM_004548 PE=4 SV=1)

HSP 1 Score: 423.32 bits (1087), Expect = 9.025e-141
Identity = 245/338 (72.49%), Postives = 268/338 (79.29%), Query Frame = -2
Query:  640 SLSQEKHSLANQLFSKHSRSQLCDACDGSPASIFCETEQSVFCSNCDWESHKFSSSSLHNRRPIEGFTGCPSVNELVSIVGIEDLG--------EKKXXXXXXXXXXXXXXLSWENPVIXXXXXXXXXXXXDHGFKPTDVLPLPKNRNAHCGQHKEEVLHQLRELAKSEPILSFD------------NTGDLQTGTVHTSCTNDTAPIPFPAYESSALRFFGDNVEMTDQVFVPFSELRGHPEECAVVPDKHLGSSRTIPVSDSLGNQ-QHQIDTGTVSALPKVAVHELNSQERDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAKVEH 1590
            S  +E HS ANQLF++H RSQLCDACD SPASIFCETEQSVFCSNCDWESHK SSSSLHNRRPIEGF+GCPSV+ELV+  GIEDLG        EK G  D G DDG LDLLSWE P  SS DDL+VSSD  HGFKPTDV PL KNRNA CG+HKEE+L QLRELAKSEP LS D            NT + Q G+VHTSC  D  PIPFPAYE SA + F DNVEM +QVF+PFS+LRG+ EE AVVP++HL +SRT  V+DSL +Q QHQI  GT SALPK+ VHELNSQERDSAISRYKEKRKTRR+DKHIRYESRKVRAESRTRIKGRFAKVEH
Sbjct:   37 SCDREVHS-ANQLFTRHPRSQLCDACDKSPASIFCETEQSVFCSNCDWESHKCSSSSLHNRRPIEGFSGCPSVSELVNSFGIEDLGSKTLFLSEEKVGCGDGGEDDGLLDLLSWETPEFSSLDDLIVSSDFGHGFKPTDVPPLRKNRNASCGRHKEEMLLQLRELAKSEPNLSTDFENVTGFLPLLPNTYNSQPGSVHTSCKIDKDPIPFPAYELSAPQCFSDNVEMANQVFLPFSQLRGYTEESAVVPNEHLDTSRTAHVNDSLEDQLQHQIAAGTTSALPKIVVHELNSQERDSAISRYKEKRKTRRYDKHIRYESRKVRAESRTRIKGRFAKVEH 373          
BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy TrEMBL
Match: A0A0D2TTQ8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G008400 PE=4 SV=1)

HSP 1 Score: 374.785 bits (961), Expect = 6.634e-123
Identity = 232/317 (73.19%), Postives = 241/317 (76.03%), Query Frame = -2
Query:  640 SLSQEKHSLANQLFSKHSRSQLCDACDGSPASIFCETEQSVFCSNCDWESHKFSSSSLHNRRPIEGFTGCPSVNELVSIVGIEDLGEKKXXXXXXXXXXXXXXLSWENPVIXXXXXXXXXXXXDHGFKPTDVLPLPKNRNAHCGQHKEEVLHQLRELAKSEPILSFDNTGDLQTGTVHTSCTNDTAPIPFPAYESSALRFFGDNVEMTDQVFVPFSELRGHPEECAVVPDKHLGSSRTIPVSDSLGNQQHQIDTGTVSALPKVAVHELNSQERDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAKVEH 1590
            S  +E HS ANQLFSKHSRSQLCDACDGSPASIFCETEQSVFCSNCDWESHKFS+SSLHNRRPIEGFTGCPSVNELVS VGIED+GEKKGGDDCGYDDGWLDLLSWENPVISSFDDLLVSSDSDHGFKPTDVLPLP                      KS  +  F +  ++           D   +PF                         SELRGH EECAVVPDKHLGSSRTIPVSDSLGNQQHQID GTVSALPKVAVHELNSQERDSAISRYKEKRKTRRFDKHIRYESRKVRAESR RIKGRFAK+EH
Sbjct:   37 SCDREVHS-ANQLFSKHSRSQLCDACDGSPASIFCETEQSVFCSNCDWESHKFSTSSLHNRRPIEGFTGCPSVNELVSFVGIEDVGEKKGGDDCGYDDGWLDLLSWENPVISSFDDLLVSSDSDHGFKPTDVLPLP----------------------KSSALRFFGDNVEM----------TDKVFVPF-------------------------SELRGHTEECAVVPDKHLGSSRTIPVSDSLGNQQHQIDAGTVSALPKVAVHELNSQERDSAISRYKEKRKTRRFDKHIRYESRKVRAESRARIKGRFAKLEH 295          
BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy TrEMBL
Match: A0A0D2R4H8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G140600 PE=4 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 5.982e-111
Identity = 196/329 (59.57%), Postives = 234/329 (71.12%), Query Frame = -2
Query:  643 SLSQEKHSLANQLFSKHSRSQLCDACDGSPASIFCETEQSVFCSNCDWESHKFSSSSLHNRRPIEGFTGCPSVNELVSIVGIEDLGEKKXXXXXXXXXXXXXXLSWENPVIXXXXXXXXXXXXDHGFKPTDVLPLPKNRNAHCGQHKEEVLHQLRELAKSEPILSFDN---------TGDLQTGTVHTSCTNDTAPIPFPAYESSALRF--FGDNVEMTDQVFVPFSELRGHPEECAVVPDKHLGSSRTIPVSDSLGNQQH--QIDTGTVSALPKVAVHELNSQERDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAKVE 1590
            S  +E HS ANQLF+KHSRSQLCDACD SPAS+FCETEQSVFCSNCDWE H+    SLHNRRP+E FTGCPSV+EL+S +GIEDLG  K       D     L +WE P+IS FD ++V +D DHGFK TDV PLPKNRN+ CGQHKEE+ HQL ELAKS+P L+F           T   Q  ++  SC ND  P+  PA E+S L+   F DNVE+T+Q  +       + EE A V + H+  SR I V+D   +QQ   Q   GT+SALPKV+VHELNSQER++AISRYKEK+KTRR+DKH+RYESRK RAESRTRIKGRFAKV+
Sbjct:   36 SCDREVHS-ANQLFTKHSRSQLCDACDESPASLFCETEQSVFCSNCDWERHR---CSLHNRRPVEVFTGCPSVSELLSFLGIEDLGNDKASCWSEDDGFLDFL-TWECPLISGFDGVIVPNDMDHGFKATDVPPLPKNRNSSCGQHKEEIFHQLHELAKSDPTLTFQKIDLQSLIPETDHFQPASMQPSCNNDADPVSCPALETSPLQCLKFNDNVEITNQALL-------YTEENARVANTHVDCSRNIDVNDGPEDQQMKPQTGVGTISALPKVSVHELNSQERETAISRYKEKKKTRRYDKHVRYESRKARAESRTRIKGRFAKVK 352          
BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy TrEMBL
Match: A0A0D2PL15_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G008400 PE=4 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 2.171e-98
Identity = 182/194 (93.81%), Postives = 186/194 (95.88%), Query Frame = -2
Query: 1009 SLSQEKHSLANQLFSKHSRSQLCDACDGSPASIFCETEQSVFCSNCDWESHKFSSSSLHNRRPIEGFTGCPSVNELVSIVGIEDLGEKKXXXXXXXXXXXXXXLSWENPVIXXXXXXXXXXXXDHGFKPTDVLPLPKNRNAHCGQHKEEVLHQLRELAKSEPILSFDNTGDLQTGTVHTSCTNDTAPIPFPAYE 1590
            S  +E HS ANQLFSKHSRSQLCDACDGSPASIFCETEQSVFCSNCDWESHKFS+SSLHNRRPIEGFTGCPSVNELVS VGIED+GEKKGGDDCGYDDGWLDLLSWENPVISSFDDLLVSSDSDHGFKPTDVLPLPKNRNA+CGQHKEEVLHQLRELAKSEP LSFDNT DLQTGTVHTSCTNDTAPI FPAYE
Sbjct:   37 SCDREVHS-ANQLFSKHSRSQLCDACDGSPASIFCETEQSVFCSNCDWESHKFSTSSLHNRRPIEGFTGCPSVNELVSFVGIEDVGEKKGGDDCGYDDGWLDLLSWENPVISSFDDLLVSSDSDHGFKPTDVLPLPKNRNANCGQHKEEVLHQLRELAKSEPTLSFDNTDDLQTGTVHTSCTNDTAPISFPAYE 229          
BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy TrEMBL
Match: V4TAX4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020545mg PE=4 SV=1)

HSP 1 Score: 305.064 bits (780), Expect = 1.259e-94
Identity = 177/344 (51.45%), Postives = 223/344 (64.83%), Query Frame = -2
Query:  640 QEKHSLANQLFSKHSRSQLCDACDGSPASIFCETEQSVFCSNCDWESHKFSS---SSLHNRRPIEGFTGCPSVNELVSIVGIEDLGEKKXXXXXXXXXXX----------XXXLSWENPVIXXXXXXXXXXXXDHGFKPTDVLPLPKNRNAHCGQHKEEVLHQLRELAKSEPILSFDNTGD---------------LQTGTVHTSCTNDTAPIPFPAYESSALRFFGDNVEMTDQVFVPFSELRGHPEECAVVPDKHLGSSRTIPVSD--SLGNQQHQIDTGTVSALPKVAVHELNSQERDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAKVEH 1581
            +E HS  NQLFSKHSRSQLCD CD SPASIFCETE SV C+NCDWESH  S+   SS+HNRRPIE F+GCPSVNE+ +I+G +DL  K    +    +             DL +WE P   S DDL+VSS++ H F+   V PLPKNRNA  GQHKEE+LHQLR+LAK +P   ++N                   Q G ++T    D  P  FPAYE+S L++FGD+ +  +Q+  P +  +   EE  +VP+KH  +   +   +    G  QH  +T   S   +V+VHELNSQERDSA+SRYKEK+KTRR+DKH+RYESRKVRAESRTRIKGRFAK++H
Sbjct:   47 KEVHS-TNQLFSKHSRSQLCDVCDASPASIFCETEHSVLCTNCDWESHSQSNLRVSSVHNRRPIESFSGCPSVNEMFAIIGFDDLDSKALFLNDETRNYSHFDGVDSDGFSDLFAWETPDFVSLDDLIVSSNAGHNFQAIGVPPLPKNRNAAGGQHKEEMLHQLRQLAKLDPNFKYENANIDEPIVGFHSLVPEPISQPGNMNTGSELDAEPNRFPAYEASTLQWFGDSFDHANQL--PSTLFKSCKEESFIVPEKHFDTDGFVKNINEGGEGQSQHPTNTEKSSVFHRVSVHELNSQERDSALSRYKEKKKTRRYDKHVRYESRKVRAESRTRIKGRFAKIDH 387          
BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy TrEMBL
Match: A0A067H8R2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g016553mg PE=4 SV=1)

HSP 1 Score: 305.064 bits (780), Expect = 1.259e-94
Identity = 177/344 (51.45%), Postives = 223/344 (64.83%), Query Frame = -2
Query:  640 QEKHSLANQLFSKHSRSQLCDACDGSPASIFCETEQSVFCSNCDWESHKFSS---SSLHNRRPIEGFTGCPSVNELVSIVGIEDLGEKKXXXXXXXXXXX----------XXXLSWENPVIXXXXXXXXXXXXDHGFKPTDVLPLPKNRNAHCGQHKEEVLHQLRELAKSEPILSFDNTGD---------------LQTGTVHTSCTNDTAPIPFPAYESSALRFFGDNVEMTDQVFVPFSELRGHPEECAVVPDKHLGSSRTIPVSD--SLGNQQHQIDTGTVSALPKVAVHELNSQERDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAKVEH 1581
            +E HS  NQLFSKHSRSQLCD CD SPASIFCETE SV C+NCDWESH  S+   SS+HNRRPIE F+GCPSVNE+ +I+G +DL  K    +    +             DL +WE P   S DDL+VSS++ H F+   V PLPKNRNA  GQHKEE+LHQLR+LAK +P   ++N                   Q G ++T    D  P  FPAYE+S L++FGD+ +  +Q+  P +  +   EE  +VP+KH  +   +   +    G  QH  +T   S   +V+VHELNSQERDSA+SRYKEK+KTRR+DKH+RYESRKVRAESRTRIKGRFAK++H
Sbjct:   47 KEVHS-TNQLFSKHSRSQLCDVCDASPASIFCETEHSVLCTNCDWESHSQSNLRVSSVHNRRPIESFSGCPSVNEMFAIIGFDDLDSKALFLNDETRNYSHFDGVDSDGFSDLFAWETPDFVSLDDLIVSSNAGHNFQAIGVPPLPKNRNAAGGQHKEEMLHQLRQLAKLDPNFKYENANIDEPIVGFHSLVPEPISQPGNMNTGSELDAEPNRFPAYEASTLQWFGDSFDHANQL--PSTLFKSCKEESFIVPEKHFDTDGFVKNINEGGEGQSQHPTNTEKSSVFHRVSVHELNSQERDSALSRYKEKKKTRRYDKHVRYESRKVRAESRTRIKGRFAKIDH 387          
BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy TrEMBL
Match: B9S3V9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0555710 PE=4 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.976e-93
Identity = 186/364 (51.10%), Postives = 221/364 (60.71%), Query Frame = -2
Query:  643 SLSQEKHSLANQLFSKHSRSQLCDACDGSPASIFCETEQSVFCSNCDWESHKFSSSSLHNRRPIEGFTGCPSVNELVSIVGIEDLGEKKXXXXXXXXXXXXXXLS-----------------WENPVIXXXXXXXXXXXXDHGFKPTDVLPLPK----------------NRNAHCGQHKEEVLHQLRELA-----------KSEPILSFDNTG--DLQTGTVHTSCTNDTAPIPFPAYESSALRFFGDNVEMTDQVFVPFSELRGHPEECAVVPDK--HLGSSRTIPVSDSLGNQQHQIDTGTVSALPKVAVHELNSQERDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAKVE 1590
            S  +E HS  NQLFSKH+RS LCD+CD SPASIFCETE SVFC NCDWE H  S SS+HNRRPIEGF+G PSV+ELVSI+G EDLG+KK      +++G   L S                 WE P + S DDL+VSSDS   F    V PLPK                NRNA CGQHKEE+L QLRELA           ++EP   F +    ++QT   H  C     PI  P+YE +   +  DN E  +QV VP +  R H EE  VVPDK  ++  S +       G  Q+   TG +S  PKV  H++NSQERDSAISRYKEKRKTRR+DKHIRYESRK RAESRTRI+GRFAK++
Sbjct:   48 SCDREVHS-TNQLFSKHTRSLLCDSCDASPASIFCETEHSVFCQNCDWEKHNLSLSSVHNRRPIEGFSGFPSVSELVSILGFEDLGDKKDKKALLFNEGDNGLASSGPDGSGFEDGYSDLLIWETPAVVSIDDLIVSSDSGPNFPALGVPPLPKAIVFRFSLFYFSCKSQNRNAVCGQHKEEILRQLRELAGLEPDPNCHNPETEPTYVFQSAAGENMQTRMTHKCCEPVARPISSPSYEENIFNWLSDNGEAGNQVSVPCTLPRSHLEESPVVPDKQSNIDGSASYANGSHEGEPQYPASTGLISVFPKVVSHDINSQERDSAISRYKEKRKTRRYDKHIRYESRKARAESRTRIRGRFAKMD 410          
BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy TrEMBL
Match: M5VM63_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006893mg PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 3.659e-88
Identity = 165/346 (47.69%), Postives = 217/346 (62.72%), Query Frame = -2
Query:  640 QEKHSLANQLFSKHSRSQLCDACDGSPASIFCETEQSVFCSNCDWESHKFSSSSLHNRRPIEGFTGCPSVNELVSIVGIEDLGEKKXXXXXXXXXXXXXXLS---------------------WENPVIXXXXXXXXXXXXDHGFKPTDVLPLPKNRNAHCGQHKEEVLHQLRELAKSEPILSFDNTG-----------DLQTGTVHTSCTNDTAPIPFPAYESSALRFFGDNVEMTDQVFVPFSELRGHPEECAVVPDKHLGSSRTIPVSDSLGNQQHQIDTGTVSALPKVAVHELNSQERDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAKVEH 1581
            +E HS ANQLFSKH+RS LCDACDGSPASIFC TE SV C NCDWESH  SSSS+H+RRP+EGF+GCP +NEL+++VG E++ +K          G                           W+ P + S DDL+VS+ + + F+   V PLPKNRNA CG+HKEE+  QLR L KSEP L  +N             ++Q G++ T   +D  P  FPAYE+   ++  D      +   P + +R + +EC VVPDKH  +  +   ++       Q+++   SA PKVA HEL+SQ R++A+SRYKEK+KTRR++KHIRYESRKVRAESRTRIKGRFAK++H
Sbjct:   49 REVHS-ANQLFSKHTRSLLCDACDGSPASIFCTTESSVLCQNCDWESHNLSSSSVHDRRPLEGFSGCPCLNELLTVVGFENMDKKALLLSDESGGGGGGGDGFLGCGVDGSFDLDDGFSDFLVWDTPSVVSLDDLIVSNPA-YKFQAMGVPPLPKNRNAACGRHKEEIFRQLRVLVKSEPNLFSENVDVKPLKSLASEQNMQRGSLFTGFEHDAEPTVFPAYEAHDFQY-NDCGAAEKRESSPKTFIRSYLQECCVVPDKHSYNDGSASHANDGHGHGGQMNSEASSAFPKVAAHELSSQNRETALSRYKEKKKTRRYEKHIRYESRKVRAESRTRIKGRFAKMDH 391          
BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy TrEMBL
Match: A0A067K755_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13861 PE=4 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 9.889e-83
Identity = 164/333 (49.25%), Postives = 196/333 (58.86%), Query Frame = -2
Query:  643 NQLFSKHSRSQLCDACDGSPASIFCETEQSVFCSNCDWESHKFSSSSLHNRRPIEGFTGCPSVNELVSIVGIEDLGEKKXXXXXXXXXXXXXXLS-------------WENPVIXXXXXXXXXXXXDHGFKPTDVLPLPKNRNAHCGQHKEEVLHQLRELAKSEPILSFDN--------------TGDLQTGTVHTSCTNDTAPIPFPAYESSALRFFGDNVEMTDQVFVPFSELRGHPEECAVVPDKHLGSSRTIPVSDSLGNQQHQIDTGTVSALPKVAVHELNSQERDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAKVE 1560
            N+LFSKH+RS LCDACD SPASIFCETE SV C NCDWE H  S SS+HNRRPIEGF+GC SV+ELVSI G ED+G+KK              L              WE+P +S  D + +S    + F+  +V PLPKNRNA CG+HKEE+L QLRELA+SEP  ++ N                + Q   +HT C            E +  ++  D  E   QV VP +  R   EE  +V DK             L N  H       + +PK+  HELNSQERDSAISRYKEKRKTRR+DKHIRYESRKVRAESRTRIKGRFAK++
Sbjct:   38 NKLFSKHTRSLLCDACDASPASIFCETEHSVLCQNCDWERHSLSVSSVHNRRPIEGFSGCRSVSELVSIWGFEDIGDKKALFLNEDSGLVGSGLDGSGFGDGYSDLLVWESPAVSIDDLIGLSGSGQN-FQALEVPPLPKNRNAVCGRHKEEILGQLRELARSEPDSNWKNPHTEPINVFQSSAEGQNRQLQNMHTGC------------EENVFQWISDPGEAGVQVSVPCTAARSDLEENFIVLDK-------------LVNGSH-----GATRVPKIGSHELNSQERDSAISRYKEKRKTRRYDKHIRYESRKVRAESRTRIKGRFAKID 339          
BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy Swiss-Prot
Match: HD1_ORYSJ (Zinc finger protein HD1 OS=Oryza sativa subsp. japonica GN=HD1 PE=2 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 3.920e-9
Identity = 27/47 (57.45%), Postives = 38/47 (80.85%), Query Frame = -2
Query:  649 LNSQERDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAK 789
             +S +R++ + RY+EK+K R+F+K IRYE+RK  AE+R RIKGRFAK
Sbjct:  321 FSSMDREARVLRYREKKKARKFEKTIRYETRKAYAEARPRIKGRFAK 367          
BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy Swiss-Prot
Match: COL7_ARATH (Zinc finger protein CONSTANS-LIKE 7 OS=Arabidopsis thaliana GN=COL7 PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.635e-8
Identity = 39/105 (37.14%), Postives = 50/105 (47.62%), Query Frame = -2
Query:  649 GHPEECAVVPDKHLGSSRTIP----------VSDSLGNQQHQIDTGTVSALPKVAVHELNSQERDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAK 933
            G P +  + P+  LG +  +P           SD    +Q   D G                ER++ + RYKEKR+TR F K IRYE RK+ AE R RIKGRF K
Sbjct:  294 GSPWKTGIKPECMLGGNTCLPHVVGGYEKLMSSDGSVTRQQGRDGGGSDG------------EREARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRPRIKGRFVK 386          
BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy Swiss-Prot
Match: COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 2.640e-8
Identity = 27/47 (57.45%), Postives = 37/47 (78.72%), Query Frame = -2
Query:  649 LNSQERDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAK 789
            L+ ++R++ + RY+EK+K R+F+K IRY SRK  AE R RIKGRFAK
Sbjct:  281 LSPRDREARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAK 327          
BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy Swiss-Prot
Match: COL16_ARATH (Zinc finger protein CONSTANS-LIKE 16 OS=Arabidopsis thaliana GN=COL16 PE=2 SV=2)

HSP 1 Score: 57.7658 bits (138), Expect = 1.170e-7
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = -2
Query:  649 RDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAK 774
            R++ +SRY+EKR+TR F K IRYE RK+ AE R R+KGRF K
Sbjct:  361 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVK 402          
BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy Swiss-Prot
Match: COL12_ARATH (Zinc finger protein CONSTANS-LIKE 12 OS=Arabidopsis thaliana GN=COL12 PE=2 SV=2)

HSP 1 Score: 57.3806 bits (137), Expect = 1.541e-7
Identity = 26/45 (57.78%), Postives = 31/45 (68.89%), Query Frame = -2
Query:  646 QERDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAKV 780
            Q R+ A  RYKEK+  R F K IRY SRK RA++R R+KGRF K 
Sbjct:  305 QARNEAKLRYKEKKLKRSFGKQIRYASRKARADTRKRVKGRFVKA 349          
BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy Swiss-Prot
Match: COL6_ARATH (Zinc finger protein CONSTANS-LIKE 6 OS=Arabidopsis thaliana GN=COL6 PE=2 SV=2)

HSP 1 Score: 57.3806 bits (137), Expect = 1.576e-7
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = -2
Query:  649 RDSAISRYKEKRKTRRFDKHIRYESRKVRAESRTRIKGRFAK 774
            R++ +SRY+EKR+TR F K IRYE RK+ AE R R+KGRF K
Sbjct:  357 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVK 398          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2R616_GOSRA0.000e+094.64Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061DQF5_THECC9.025e-14172.49B-box type zinc finger protein with CCT domain, pu... [more]
A0A0D2TTQ8_GOSRA6.634e-12373.19Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2R4H8_GOSRA5.982e-11159.57Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2PL15_GOSRA2.171e-9893.81Uncharacterized protein OS=Gossypium raimondii GN=... [more]
V4TAX4_9ROSI1.259e-9451.45Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A067H8R2_CITSI1.259e-9451.45Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
B9S3V9_RICCO1.976e-9351.10Putative uncharacterized protein OS=Ricinus commun... [more]
M5VM63_PRUPE3.659e-8847.69Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A067K755_JATCU9.889e-8349.25Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0018556 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
HD1_ORYSJ3.920e-957.45Zinc finger protein HD1 OS=Oryza sativa subsp. jap... [more]
COL7_ARATH1.635e-837.14Zinc finger protein CONSTANS-LIKE 7 OS=Arabidopsis... [more]
COL1_ARATH2.640e-857.45Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis... [more]
COL16_ARATH1.170e-761.90Zinc finger protein CONSTANS-LIKE 16 OS=Arabidopsi... [more]
COL12_ARATH1.541e-757.78Zinc finger protein CONSTANS-LIKE 12 OS=Arabidopsi... [more]
COL6_ARATH1.576e-761.90Zinc finger protein CONSTANS-LIKE 6 OS=Arabidopsis... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000315B-box-type zinc fingerSMARTSM00336bboxneu5coord: 17..63
e-value: 6.6E-4
score: 29.0
IPR000315B-box-type zinc fingerPFAMPF00643zf-B_boxcoord: 19..63
e-value: 1.5E-7
score: 31.3
IPR000315B-box-type zinc fingerPROSITEPS50119ZF_BBOXcoord: 17..63
score: 10.509
IPR010402CCT domainPFAMPF06203CCTcoord: 272..314
e-value: 4.5E-17
score: 61.7
IPR010402CCT domainPROSITEPS51017CCTcoord: 272..314
score: 15.12
NoneNo IPR availablePANTHERPTHR31717:SF16ZINC FINGER PROTEIN CONSTANS-LIKE 13coord: 9..315
NoneNo IPR availablePANTHERPTHR31717FAMILY NOT NAMEDcoord: 9..315

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0018556 ID=g.arboreum_cottongen_reftransV1_0018556; Name=g.arboreum_cottongen_reftransV1_0018556; organism=Gossypium arboreum; type=contig; length=1594bp
ACTGACAGCAGCATTACTAGTAGTACCACTGTGGGTCAAAACTTCCAGAA
ACAAGACCGCAATATTTCTCGTCATCCTAGACGTCACCACAGGGCAGCAA
TGGCTGTCAGTATCTTAGGCCAAGAAGGTAACTCGCATGTCCAATCGAAG
AAAGACCGGATTTTGTTTTATATGGTTGTTGGCGTCTTTGGTTTTGCATT
TGGCTCATAGCACACGCCATATTCAACATGAGTATTTAATGAACTTCCCA
ATGGTGTTAAATTTGTAGCCAAGCTGGTTGTGGAATCTCATTACAGTAAA
AAATGGAATATTCTCAACATAGAACTCAAATTTCACTAACCATCGTTTTA
TTTTGCATGACATGATTGCAAAAAGTCCAAGATTCCAAATAAGGGCTTTC
ACTGCTGTAGCCAATAATCAGCATTTCAATGCACAAACCATCAGCTTAAA
GGTTAAAAAATAGCCTACATGATGTAATTATAGGTATTACAATTCAATAT
TTTACAAGAAACCTTGCATCTTACTAAGATTTTAGCTTCAAAGGAACAAA
GAATGAACAAAGGAAAACATTATCTAGTTACAAAAATGATCCATGTTCAT
AGCAATTCCAGTCTCAAAAGTAGTTTACCAGTAATCTCAATGCTCCACCT
TCGCAAAACGTCCTTTAATTCTCGTCCTGCTTTCGGCTCTAACCTTTCTT
GATTCGTACCTGATGTGCTTATCGAATCTCCTTGTTTTCCTTTTCTCCTT
GTAGCGCGAGATCGCAGAGTCTCTCTCCTGGCTATTTAACTCGTGGACAG
CGACCTTTGGAAGTGCTGACACGGTTCCAGTATCAATTTGATGTTGTTGG
TTCCCAAGACTATCACTCACAGGTATAGTCCTACTTGAACCTAGATGTTT
ATCAGGAACCACAGCACATTCCTCAGGATGACCTCTTAATTCCGAGAAAG
GCACAAAAACTTGGTCGGTCATCTCAACGTTGTCGCCGAAGAACCGTAGT
GCGCTTGACTCATAAGCAGGAAATGGAATTGGAGCTGTATCATTTGTGCA
ACTTGTATGCACAGTTCCTGTCTGCAAATCACCAGTATTATCAAAGCTGA
GGATAGGTTCAGATTTTGCTAGTTCACGTAGTTGATGAAGTACTTCCTCT
TTATGTTGTCCACAATGAGCATTACGATTCTTGGGCAAAGGAAGAACATC
AGTTGGCTTAAACCCATGATCAGAATCACTCGAAACAAGCAAATCATCAA
AGCTAGAAATCACCGGATTTTCCCAGCTCAACAAATCCAACCACCCATCA
TCATATCCACAATCATCACCACCTTTCTTTTCACCCAAATCCTCAATCCC
AACAATACTCACCAACTCATTCACCGAAGGACACCCAGTAAACCCTTCTA
TTGGCCTCCTATTATGCAACGAAGACGACGAAAACTTGTGGCTTTCCCAA
TCACAGTTGGAGCAAAACACCGATTGCTCTGTTTCGCAAAAGATGGAAGC
AGGGGAACCATCACAAGCGTCACAGAGCTGTGACCGAGAGTGCTTAGAGA
ATAGTTGGTTAGCCAAGCTATGTTTTTCTTGTGACAGGGAAGTT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR000315Znf_B-box
IPR010402CCT_domain
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular anatomical structure