g.arboreum_cottongen_reftransV1_0021779, g.arboreum_cottongen_reftransV1_0021779 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0021779 vs. ExPASy TrEMBL
Match: I1MVE0_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 2.843e-16 Identity = 76/115 (66.09%), Postives = 91/115 (79.13%), Query Frame = 2 Query: 41 MGCT-RDKHIRSARRTRSVKHETDPCCXXXXXXXXXXXXXXXXXPLSYHLGVNDSTQSXXXXXXXXXXXXXXDHGWGYCTXXXXXXXXXXXXXXXYNEAITKLISLGYDEDVALK 382 MGCT R+KHIR+ RR RSVK + D C DK +ISKSI ESG+KP YHLG+NDS+QSPN PN + GWGYCTEE+LEEILLKNLEF+YNEA++KL++LGYDEDVA+K Sbjct: 1 MGCTMREKHIRANRRPRSVKPDPDSC---DKDAISKSIAESGLKPFKYHLGLNDSSQSPNSIPNAE------ETGWGYCTEEQLEEILLKNLEFIYNEAVSKLVALGYDEDVAVK 106
BLAST of g.arboreum_cottongen_reftransV1_0021779 vs. ExPASy TrEMBL
Match: A0A0B2NXA7_GLYSO (MND1-interacting protein 1 OS=Glycine soja GN=glysoja_012996 PE=4 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 3.012e-16 Identity = 76/115 (66.09%), Postives = 91/115 (79.13%), Query Frame = 2 Query: 41 MGCT-RDKHIRSARRTRSVKHETDPCCXXXXXXXXXXXXXXXXXPLSYHLGVNDSTQSXXXXXXXXXXXXXXDHGWGYCTXXXXXXXXXXXXXXXYNEAITKLISLGYDEDVALK 382 MGCT R+KHIR+ RR RSVK + D C DK +ISKSI ESG+KP YHLG+NDS+QSPN PN + GWGYCTEE+LEEILLKNLEF+YNEA++KL++LGYDEDVA+K Sbjct: 1 MGCTMREKHIRANRRPRSVKPDPDSC---DKDAISKSIAESGLKPFKYHLGLNDSSQSPNSIPNAE------ETGWGYCTEEQLEEILLKNLEFIYNEAVSKLVALGYDEDVAVK 106
BLAST of g.arboreum_cottongen_reftransV1_0021779 vs. ExPASy TrEMBL
Match: W9SCT0_9ROSA (MND1-interacting protein 1 OS=Morus notabilis GN=L484_023287 PE=4 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 4.757e-16 Identity = 86/119 (72.27%), Postives = 101/119 (84.87%), Query Frame = 2 Query: 41 MGCT-RDKHIRSARRTRSVKHETDPCCXXXXXXXXXXXXXXXX-XPL-SYHLGVNDSTQ--SXXXXXXXXXXXXXXDHGWGYCTXXXXXXXXXXXXXXXYNEAITKLISLGYDEDVALK 382 MGCT RDKHIR+ RR RSVKHE DPC LLDK+SISKSILESG+ KPL S + G NDSTQ S N NP+ + N+N +D GWGYCTE++LEEILLKNLEFLYNEAI++L++LGY+EDVALK Sbjct: 1 MGCTVRDKHIRTNRRLRSVKHEIDPCSLLDKASISKSILESGLIKPLNSPNSGSNDSTQNPSSNPNPSASPNSNCDDSGWGYCTEDQLEEILLKNLEFLYNEAISRLVALGYNEDVALK 119
BLAST of g.arboreum_cottongen_reftransV1_0021779 vs. ExPASy TrEMBL
Match: A5ANR3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004428 PE=4 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 4.784e-16 Identity = 76/115 (66.09%), Postives = 93/115 (80.87%), Query Frame = 2 Query: 41 MGCT-RDKHIRSARRTRSVKHETDPCCXXXXXXXXXXXXXXXXXPLSYHLGVNDSTQSXXXXXXXXXXXXXXDHGWGYCTXXXXXXXXXXXXXXXYNEAITKLISLGYDEDVALK 382 MGCT R+KHIR+ RR RSVK + D D++SISKSI ++G+KPL YH+GV+DS Q+PN NPN + D GWGYCTEE+LEEILLKNLEFLYNEAI+KL++LGYD+DVALK Sbjct: 1 MGCTVREKHIRTTRRPRSVKTDNDHASAFDRASISKSIFDAGLKPLGYHVGVHDSGQNPNPNPNFD------DSGWGYCTEEQLEEILLKNLEFLYNEAISKLVALGYDDDVALK 109
BLAST of g.arboreum_cottongen_reftransV1_0021779 vs. ExPASy TrEMBL
Match: A0A0B2SN63_GLYSO (MND1-interacting protein 1 OS=Glycine soja GN=glysoja_030711 PE=4 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.682e-15 Identity = 76/115 (66.09%), Postives = 92/115 (80.00%), Query Frame = 2 Query: 41 MGCT-RDKHIRSARRTRSVKHETDPCCXXXXXXXXXXXXXXXXXPLSYHLGVNDSTQSXXXXXXXXXXXXXXDHGWGYCTXXXXXXXXXXXXXXXYNEAITKLISLGYDEDVALK 382 MGCT R+KHIR+ RR RSVK ++D C DK +ISKSI ESG+KP YHL +NDS+QSPN NPN + GWGYCTEE+LEEILLKNLEF+YNEA++KL++LGYDEDVA+K Sbjct: 1 MGCTMREKHIRANRRPRSVKPDSDSC---DKDAISKSIAESGLKPFKYHLDLNDSSQSPNSNPNVE------ETGWGYCTEEQLEEILLKNLEFIYNEAVSKLVALGYDEDVAVK 106
BLAST of g.arboreum_cottongen_reftransV1_0021779 vs. ExPASy TrEMBL
Match: R0HRP6_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10022744mg PE=4 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.923e-15 Identity = 69/115 (60.00%), Postives = 91/115 (79.13%), Query Frame = 2 Query: 41 MGCT-RDKHIRSARRTRSVKHETDPCCXXXXXXXXXXXXXXXXXPLSYHLGVNDSTQSXXXXXXXXXXXXXXDHGWGYCTXXXXXXXXXXXXXXXYNEAITKLISLGYDEDVALK 382 MGCT R+KH+R R+TRSVK E DPCCLLD++++SKSI+ES +K L YH G+ DS N + N D+GWGYCTEE+LE+ILLK+LE++YNEAI+KL++LGY+EDVAL+ Sbjct: 1 MGCTVREKHVRPNRKTRSVKPEFDPCCLLDRTALSKSIVESSLKHLVYHPGLLDSCPESNPSGNFE------DNGWGYCTEEQLEDILLKHLEYIYNEAISKLVALGYNEDVALR 109
BLAST of g.arboreum_cottongen_reftransV1_0021779 vs. ExPASy TrEMBL
Match: M5WCP8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002069mg PE=4 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 2.678e-15 Identity = 78/116 (67.24%), Postives = 97/116 (83.62%), Query Frame = 2 Query: 41 MGCT-RDKHIRSARRTRSVKHETDPCCXXXXXXXXXXXXXXXXXPLSYHLGVN-DSTQSXXXXXXXXXXXXXXDHGWGYCTXXXXXXXXXXXXXXXYNEAITKLISLGYDEDVALK 382 MGCT R+KHIR+ RR RS K + D CC +D++SISKSILESG+KP ++HLG N DSTQ+P +P+ N+N + + GWGYCTEE+LEEILLKNLEFLYNEAI+KL++LGYDED ALK Sbjct: 1 MGCTVREKHIRTNRRPRSAKPDFDYCCHIDRASISKSILESGLKPFNHHLGSNNDSTQNPKSSPSPNSNFD--ESGWGYCTEEQLEEILLKNLEFLYNEAISKLVALGYDEDAALK 114
BLAST of g.arboreum_cottongen_reftransV1_0021779 vs. ExPASy TrEMBL
Match: V4M784_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10016336mg PE=4 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 3.240e-15 Identity = 68/115 (59.13%), Postives = 90/115 (78.26%), Query Frame = 2 Query: 41 MGCT-RDKHIRSARRTRSVKHETDPCCXXXXXXXXXXXXXXXXXPLSYHLGVNDSTQSXXXXXXXXXXXXXXDHGWGYCTXXXXXXXXXXXXXXXYNEAITKLISLGYDEDVALK 382 MGCT R+KH+R R+TRSVK E DPCCLLD++++ KS +ES +K L YH G+ DS PN + N+ ++GWGYCTEE+LE+ILLK+LE++YNEAI+KL+ LGYDEDVAL+ Sbjct: 1 MGCTVREKHVRPNRKTRSVKPEFDPCCLLDRTALPKSSVESSLKHLVYHPGLLDSGPDPNHSGNSE------ENGWGYCTEEQLEDILLKHLEYIYNEAISKLVGLGYDEDVALR 109
BLAST of g.arboreum_cottongen_reftransV1_0021779 vs. ExPASy TrEMBL
Match: F6HTA8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0012g01020 PE=4 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 6.662e-15 Identity = 74/115 (64.35%), Postives = 93/115 (80.87%), Query Frame = 2 Query: 41 MGCT-RDKHIRSARRTRSVKHETDPCCXXXXXXXXXXXXXXXXXPLSYHLGVNDSTQSXXXXXXXXXXXXXXDHGWGYCTXXXXXXXXXXXXXXXYNEAITKLISLGYDEDVALK 382 MGCT R+KHIR+ RR RSVK + D D++SISKSI ++G+KPL +H+GV+DS Q+P+ NPN + D GWGYCTEE+LEEILLKNLEFLYNEAI+KL++LGYD+DVALK Sbjct: 1 MGCTVREKHIRTTRRPRSVKTDNDHASAFDRASISKSIFDAGLKPLGHHVGVHDSGQNPHPNPNFD------DSGWGYCTEEQLEEILLKNLEFLYNEAISKLVALGYDDDVALK 109
BLAST of g.arboreum_cottongen_reftransV1_0021779 vs. ExPASy TrEMBL
Match: A0A022Q4A7_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a002013mg PE=4 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.068e-14 Identity = 64/115 (55.65%), Postives = 83/115 (72.17%), Query Frame = 2 Query: 41 MGCT-RDKHIRSARRTRSVKHETDPCCXXXXXXXXXXXXXXXXXPLSYHLGVNDSTQSXXXXXXXXXXXXXXDHGWGYCTXXXXXXXXXXXXXXXYNEAITKLISLGYDEDVALK 382 MGCT R+KHIR+ RRTRSVK E+D ++ + + IKP +YH+ ++ TQ+ N N + D+GWGYCTEE+LEEILLKNLEFLYNEAI+KL++LGYD+DVALK Sbjct: 1 MGCTVREKHIRTNRRTRSVKPESDHSAAVNGNGNGEKSGNVKIKPKNYHMALSTLTQNANPNSAFD------DNGWGYCTEEQLEEILLKNLEFLYNEAISKLVTLGYDDDVALK 109
BLAST of g.arboreum_cottongen_reftransV1_0021779 vs. ExPASy Swiss-Prot
Match: MIP1_ARATH (MND1-interacting protein 1 OS=Arabidopsis thaliana GN=MIP1 PE=1 SV=1) HSP 1 Score: 50.8322 bits (120), Expect = 7.140e-7 Identity = 55/116 (47.41%), Postives = 78/116 (67.24%), Query Frame = 2 Query: 41 MGCT-RDKHIRSARRTRSVKHETDP-CCXXXXXXXXXXXXXXXXXPLSYHLGVNDSTQSXXXXXXXXXXXXXXDHGWGYCTXXXXXXXXXXXXXXXYNEAITKLISLGYDEDVALK 382 MGCT R+KH++ RR ++ +DP C ++K ++S+SI+E+ L YH G+ DS N+ N ++ W YCTEE LEEILLK+LEFLYN+A++KL+ LGY+E VALK Sbjct: 1 MGCTVREKHVKPTRRIKAAAFRSDPPLCWVEKIAMSQSIVEN----LVYHPGLTDSGS----VNLNSVTENPEENFWAYCTEEHLEEILLKHLEFLYNQAVSKLLELGYEERVALK 108 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0021779 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0021779 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0021779 ID=g.arboreum_cottongen_reftransV1_0021779; Name=g.arboreum_cottongen_reftransV1_0021779; organism=Gossypium arboreum; type=contig; length=382bpback to top |