g.arboreum_cottongen_reftransV1_0021779, g.arboreum_cottongen_reftransV1_0021779 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0021779
Unique Nameg.arboreum_cottongen_reftransV1_0021779
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length382
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr6chromosomeg.arboreum_cottongen_reftransV1_0021779:1..382 .
Chr6:50549449..50549984 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0021779 vs. ExPASy TrEMBL
Match: I1MVE0_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.843e-16
Identity = 76/115 (66.09%), Postives = 91/115 (79.13%), Query Frame = 2
Query:   41 MGCT-RDKHIRSARRTRSVKHETDPCCXXXXXXXXXXXXXXXXXPLSYHLGVNDSTQSXXXXXXXXXXXXXXDHGWGYCTXXXXXXXXXXXXXXXYNEAITKLISLGYDEDVALK 382
            MGCT R+KHIR+ RR RSVK + D C   DK +ISKSI ESG+KP  YHLG+NDS+QSPN  PN        + GWGYCTEE+LEEILLKNLEF+YNEA++KL++LGYDEDVA+K
Sbjct:    1 MGCTMREKHIRANRRPRSVKPDPDSC---DKDAISKSIAESGLKPFKYHLGLNDSSQSPNSIPNAE------ETGWGYCTEEQLEEILLKNLEFIYNEAVSKLVALGYDEDVAVK 106          
BLAST of g.arboreum_cottongen_reftransV1_0021779 vs. ExPASy TrEMBL
Match: A0A0B2NXA7_GLYSO (MND1-interacting protein 1 OS=Glycine soja GN=glysoja_012996 PE=4 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.012e-16
Identity = 76/115 (66.09%), Postives = 91/115 (79.13%), Query Frame = 2
Query:   41 MGCT-RDKHIRSARRTRSVKHETDPCCXXXXXXXXXXXXXXXXXPLSYHLGVNDSTQSXXXXXXXXXXXXXXDHGWGYCTXXXXXXXXXXXXXXXYNEAITKLISLGYDEDVALK 382
            MGCT R+KHIR+ RR RSVK + D C   DK +ISKSI ESG+KP  YHLG+NDS+QSPN  PN        + GWGYCTEE+LEEILLKNLEF+YNEA++KL++LGYDEDVA+K
Sbjct:    1 MGCTMREKHIRANRRPRSVKPDPDSC---DKDAISKSIAESGLKPFKYHLGLNDSSQSPNSIPNAE------ETGWGYCTEEQLEEILLKNLEFIYNEAVSKLVALGYDEDVAVK 106          
BLAST of g.arboreum_cottongen_reftransV1_0021779 vs. ExPASy TrEMBL
Match: W9SCT0_9ROSA (MND1-interacting protein 1 OS=Morus notabilis GN=L484_023287 PE=4 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.757e-16
Identity = 86/119 (72.27%), Postives = 101/119 (84.87%), Query Frame = 2
Query:   41 MGCT-RDKHIRSARRTRSVKHETDPCCXXXXXXXXXXXXXXXX-XPL-SYHLGVNDSTQ--SXXXXXXXXXXXXXXDHGWGYCTXXXXXXXXXXXXXXXYNEAITKLISLGYDEDVALK 382
            MGCT RDKHIR+ RR RSVKHE DPC LLDK+SISKSILESG+ KPL S + G NDSTQ  S N NP+ + N+N +D GWGYCTE++LEEILLKNLEFLYNEAI++L++LGY+EDVALK
Sbjct:    1 MGCTVRDKHIRTNRRLRSVKHEIDPCSLLDKASISKSILESGLIKPLNSPNSGSNDSTQNPSSNPNPSASPNSNCDDSGWGYCTEDQLEEILLKNLEFLYNEAISRLVALGYNEDVALK 119          
BLAST of g.arboreum_cottongen_reftransV1_0021779 vs. ExPASy TrEMBL
Match: A5ANR3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004428 PE=4 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.784e-16
Identity = 76/115 (66.09%), Postives = 93/115 (80.87%), Query Frame = 2
Query:   41 MGCT-RDKHIRSARRTRSVKHETDPCCXXXXXXXXXXXXXXXXXPLSYHLGVNDSTQSXXXXXXXXXXXXXXDHGWGYCTXXXXXXXXXXXXXXXYNEAITKLISLGYDEDVALK 382
            MGCT R+KHIR+ RR RSVK + D     D++SISKSI ++G+KPL YH+GV+DS Q+PN NPN +      D GWGYCTEE+LEEILLKNLEFLYNEAI+KL++LGYD+DVALK
Sbjct:    1 MGCTVREKHIRTTRRPRSVKTDNDHASAFDRASISKSIFDAGLKPLGYHVGVHDSGQNPNPNPNFD------DSGWGYCTEEQLEEILLKNLEFLYNEAISKLVALGYDDDVALK 109          
BLAST of g.arboreum_cottongen_reftransV1_0021779 vs. ExPASy TrEMBL
Match: A0A0B2SN63_GLYSO (MND1-interacting protein 1 OS=Glycine soja GN=glysoja_030711 PE=4 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.682e-15
Identity = 76/115 (66.09%), Postives = 92/115 (80.00%), Query Frame = 2
Query:   41 MGCT-RDKHIRSARRTRSVKHETDPCCXXXXXXXXXXXXXXXXXPLSYHLGVNDSTQSXXXXXXXXXXXXXXDHGWGYCTXXXXXXXXXXXXXXXYNEAITKLISLGYDEDVALK 382
            MGCT R+KHIR+ RR RSVK ++D C   DK +ISKSI ESG+KP  YHL +NDS+QSPN NPN        + GWGYCTEE+LEEILLKNLEF+YNEA++KL++LGYDEDVA+K
Sbjct:    1 MGCTMREKHIRANRRPRSVKPDSDSC---DKDAISKSIAESGLKPFKYHLDLNDSSQSPNSNPNVE------ETGWGYCTEEQLEEILLKNLEFIYNEAVSKLVALGYDEDVAVK 106          
BLAST of g.arboreum_cottongen_reftransV1_0021779 vs. ExPASy TrEMBL
Match: R0HRP6_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10022744mg PE=4 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.923e-15
Identity = 69/115 (60.00%), Postives = 91/115 (79.13%), Query Frame = 2
Query:   41 MGCT-RDKHIRSARRTRSVKHETDPCCXXXXXXXXXXXXXXXXXPLSYHLGVNDSTQSXXXXXXXXXXXXXXDHGWGYCTXXXXXXXXXXXXXXXYNEAITKLISLGYDEDVALK 382
            MGCT R+KH+R  R+TRSVK E DPCCLLD++++SKSI+ES +K L YH G+ DS    N + N        D+GWGYCTEE+LE+ILLK+LE++YNEAI+KL++LGY+EDVAL+
Sbjct:    1 MGCTVREKHVRPNRKTRSVKPEFDPCCLLDRTALSKSIVESSLKHLVYHPGLLDSCPESNPSGNFE------DNGWGYCTEEQLEDILLKHLEYIYNEAISKLVALGYNEDVALR 109          
BLAST of g.arboreum_cottongen_reftransV1_0021779 vs. ExPASy TrEMBL
Match: M5WCP8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002069mg PE=4 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.678e-15
Identity = 78/116 (67.24%), Postives = 97/116 (83.62%), Query Frame = 2
Query:   41 MGCT-RDKHIRSARRTRSVKHETDPCCXXXXXXXXXXXXXXXXXPLSYHLGVN-DSTQSXXXXXXXXXXXXXXDHGWGYCTXXXXXXXXXXXXXXXYNEAITKLISLGYDEDVALK 382
            MGCT R+KHIR+ RR RS K + D CC +D++SISKSILESG+KP ++HLG N DSTQ+P  +P+ N+N +  + GWGYCTEE+LEEILLKNLEFLYNEAI+KL++LGYDED ALK
Sbjct:    1 MGCTVREKHIRTNRRPRSAKPDFDYCCHIDRASISKSILESGLKPFNHHLGSNNDSTQNPKSSPSPNSNFD--ESGWGYCTEEQLEEILLKNLEFLYNEAISKLVALGYDEDAALK 114          
BLAST of g.arboreum_cottongen_reftransV1_0021779 vs. ExPASy TrEMBL
Match: V4M784_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10016336mg PE=4 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.240e-15
Identity = 68/115 (59.13%), Postives = 90/115 (78.26%), Query Frame = 2
Query:   41 MGCT-RDKHIRSARRTRSVKHETDPCCXXXXXXXXXXXXXXXXXPLSYHLGVNDSTQSXXXXXXXXXXXXXXDHGWGYCTXXXXXXXXXXXXXXXYNEAITKLISLGYDEDVALK 382
            MGCT R+KH+R  R+TRSVK E DPCCLLD++++ KS +ES +K L YH G+ DS   PN + N+       ++GWGYCTEE+LE+ILLK+LE++YNEAI+KL+ LGYDEDVAL+
Sbjct:    1 MGCTVREKHVRPNRKTRSVKPEFDPCCLLDRTALPKSSVESSLKHLVYHPGLLDSGPDPNHSGNSE------ENGWGYCTEEQLEDILLKHLEYIYNEAISKLVGLGYDEDVALR 109          
BLAST of g.arboreum_cottongen_reftransV1_0021779 vs. ExPASy TrEMBL
Match: F6HTA8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0012g01020 PE=4 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.662e-15
Identity = 74/115 (64.35%), Postives = 93/115 (80.87%), Query Frame = 2
Query:   41 MGCT-RDKHIRSARRTRSVKHETDPCCXXXXXXXXXXXXXXXXXPLSYHLGVNDSTQSXXXXXXXXXXXXXXDHGWGYCTXXXXXXXXXXXXXXXYNEAITKLISLGYDEDVALK 382
            MGCT R+KHIR+ RR RSVK + D     D++SISKSI ++G+KPL +H+GV+DS Q+P+ NPN +      D GWGYCTEE+LEEILLKNLEFLYNEAI+KL++LGYD+DVALK
Sbjct:    1 MGCTVREKHIRTTRRPRSVKTDNDHASAFDRASISKSIFDAGLKPLGHHVGVHDSGQNPHPNPNFD------DSGWGYCTEEQLEEILLKNLEFLYNEAISKLVALGYDDDVALK 109          
BLAST of g.arboreum_cottongen_reftransV1_0021779 vs. ExPASy TrEMBL
Match: A0A022Q4A7_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a002013mg PE=4 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.068e-14
Identity = 64/115 (55.65%), Postives = 83/115 (72.17%), Query Frame = 2
Query:   41 MGCT-RDKHIRSARRTRSVKHETDPCCXXXXXXXXXXXXXXXXXPLSYHLGVNDSTQSXXXXXXXXXXXXXXDHGWGYCTXXXXXXXXXXXXXXXYNEAITKLISLGYDEDVALK 382
            MGCT R+KHIR+ RRTRSVK E+D    ++ +   +      IKP +YH+ ++  TQ+ N N   +      D+GWGYCTEE+LEEILLKNLEFLYNEAI+KL++LGYD+DVALK
Sbjct:    1 MGCTVREKHIRTNRRTRSVKPESDHSAAVNGNGNGEKSGNVKIKPKNYHMALSTLTQNANPNSAFD------DNGWGYCTEEQLEEILLKNLEFLYNEAISKLVTLGYDDDVALK 109          
BLAST of g.arboreum_cottongen_reftransV1_0021779 vs. ExPASy Swiss-Prot
Match: MIP1_ARATH (MND1-interacting protein 1 OS=Arabidopsis thaliana GN=MIP1 PE=1 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 7.140e-7
Identity = 55/116 (47.41%), Postives = 78/116 (67.24%), Query Frame = 2
Query:   41 MGCT-RDKHIRSARRTRSVKHETDP-CCXXXXXXXXXXXXXXXXXPLSYHLGVNDSTQSXXXXXXXXXXXXXXDHGWGYCTXXXXXXXXXXXXXXXYNEAITKLISLGYDEDVALK 382
            MGCT R+KH++  RR ++    +DP  C ++K ++S+SI+E+    L YH G+ DS         N+   N  ++ W YCTEE LEEILLK+LEFLYN+A++KL+ LGY+E VALK
Sbjct:    1 MGCTVREKHVKPTRRIKAAAFRSDPPLCWVEKIAMSQSIVEN----LVYHPGLTDSGS----VNLNSVTENPEENFWAYCTEEHLEEILLKHLEFLYNQAVSKLLELGYEERVALK 108          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0021779 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
I1MVE0_SOYBN2.843e-1666.09Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0B2NXA7_GLYSO3.012e-1666.09MND1-interacting protein 1 OS=Glycine soja GN=glys... [more]
W9SCT0_9ROSA4.757e-1672.27MND1-interacting protein 1 OS=Morus notabilis GN=L... [more]
A5ANR3_VITVI4.784e-1666.09Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A0B2SN63_GLYSO1.682e-1566.09MND1-interacting protein 1 OS=Glycine soja GN=glys... [more]
R0HRP6_9BRAS1.923e-1560.00Uncharacterized protein OS=Capsella rubella GN=CAR... [more]
M5WCP8_PRUPE2.678e-1567.24Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
V4M784_EUTSA3.240e-1559.13Uncharacterized protein OS=Eutrema salsugineum GN=... [more]
F6HTA8_VITVI6.662e-1564.35Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A022Q4A7_ERYGU1.068e-1455.65Uncharacterized protein OS=Erythranthe guttata GN=... [more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0021779 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MIP1_ARATH7.140e-747.41MND1-interacting protein 1 OS=Arabidopsis thaliana... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR10044:SF133MND1-INTERACTING PROTEIN 1coord: 1..114
NoneNo IPR availablePANTHERPTHR10044INHIBITOR OF APOPTOSIScoord: 1..114

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0021779 ID=g.arboreum_cottongen_reftransV1_0021779; Name=g.arboreum_cottongen_reftransV1_0021779; organism=Gossypium arboreum; type=contig; length=382bp
AACCCATATTCACCTAAATCTCGGGAAAAAACACAAACAGATGGGTTGCA
CTAGAGACAAGCATATACGGTCGGCCCGAAGGACCCGATCGGTGAAACAC
GAAACCGATCCTTGCTGTCTTCTTGACAAATCTTCGATATCCAAATCCAT
ACTTGAATCGGGTATTAAACCCTTGAGTTACCATTTGGGTGTAAATGATT
CGACCCAAAGCCCTAATCTTAACCCTAATAACAACGCCAATGCTAATTTT
AATGATCATGGTTGGGGGTATTGCACTGAGGAAGAATTAGAGGAAATTTT
GTTGAAAAACCTGGAATTTTTGTACAATGAAGCGATAACTAAGCTTATAT
CGTTAGGTTACGATGAGGATGTTGCATTAAAG
back to top