g.arboreum_cottongen_reftransV1_0014722, g.arboreum_cottongen_reftransV1_0014722 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0014722
Unique Nameg.arboreum_cottongen_reftransV1_0014722
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length568
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr1chromosomeg.arboreum_cottongen_reftransV1_0014722:1..568 .
Chr1:135034309..135035168 +
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: A0A0B0PT17_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_15342 PE=4 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.767e-59
Identity = 93/108 (86.11%), Postives = 99/108 (91.67%), Query Frame = 2 
Query:    2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 325
            RSRQE+LSTMTPR T+HWPF SK +GK  ++ SPHTPKAPR GPRPPSR+KVTELRQIAAVLFQDS FPSRCMVPS LPKPLCKSLASNRVLFYEDELCQAVAQNKLR
Sbjct:   88 RSRQEMLSTMTPRVTEHWPFLSKRDGKSNLIGSPHTPKAPRQGPRPPSRIKVTELRQIAAVLFQDSGFPSRCMVPSVLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 195
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: B9SYT6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0362700 PE=4 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 4.482e-59
Identity = 92/108 (85.19%), Postives = 98/108 (90.74%), Query Frame = 2 
Query:    2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 325
            RSRQE+L  MTPRPT+HWPF SKG+GKG  + SPHTPKAPRHGPRPPSRVKVTE++QIAAVLFQDSAFPSR MVPS L KPLCKSLASNR LFYEDELCQAVAQNKLR
Sbjct:  162 RSRQEILRVMTPRPTEHWPFVSKGDGKGAFMPSPHTPKAPRHGPRPPSRVKVTEMKQIAAVLFQDSAFPSRYMVPSALSKPLCKSLASNRALFYEDELCQAVAQNKLR 269
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: A0A0B0PUN9_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_15342 PE=4 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 5.726e-59
Identity = 93/108 (86.11%), Postives = 99/108 (91.67%), Query Frame = 2 
Query:    2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 325
            RSRQE+LSTMTPR T+HWPF SK +GK  ++ SPHTPKAPR GPRPPSR+KVTELRQIAAVLFQDS FPSRCMVPS LPKPLCKSLASNRVLFYEDELCQAVAQNKLR
Sbjct:  160 RSRQEMLSTMTPRVTEHWPFLSKRDGKSNLIGSPHTPKAPRQGPRPPSRIKVTELRQIAAVLFQDSGFPSRCMVPSVLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 267
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: A5AZ75_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036263 PE=4 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 2.195e-58
Identity = 93/107 (86.92%), Postives = 100/107 (93.46%), Query Frame = 2 
Query:    2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKL 322
            RSRQE+L TMTP PT+HWPF SKG+GKG+ L SPHTPKAPRHGPRPPSR+KVTE+RQIAAVLFQ+SA PSRCMVPS LPKPLCKSLASNRVLFYEDELCQAVAQNKL
Sbjct:  356 RSRQEMLRTMTPLPTEHWPFVSKGDGKGVFLASPHTPKAPRHGPRPPSRLKVTEMRQIAAVLFQESALPSRCMVPSILPKPLCKSLASNRVLFYEDELCQAVAQNKL 462
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: A0A068VHN2_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_918 OS=Coffea canephora GN=GSCOC_T00011340001 PE=4 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 3.929e-58
Identity = 88/108 (81.48%), Postives = 99/108 (91.67%), Query Frame = 2 
Query:    2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 325
            R+RQE+L TMTP PTDHWPF SKG+GKGI + SPHTPKAPRHGPRPPSR+K TE+RQIAAVLFQ+SAFPSRC+VPS L +P+CKSLASNR LFYE+ELCQAVAQNKLR
Sbjct:    6 RTRQEMLRTMTPLPTDHWPFMSKGDGKGIWIPSPHTPKAPRHGPRPPSRLKFTEMRQIAAVLFQESAFPSRCLVPSALSQPICKSLASNRALFYEEELCQAVAQNKLR 113
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: B9MXD0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s11220g PE=4 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 4.000e-58
Identity = 89/108 (82.41%), Postives = 99/108 (91.67%), Query Frame = 2 
Query:    2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 325
            RSRQE+L TMTPRPT+HWPF SKG GKGI + +PHTPKAPRHGPRPPSR+K+TE++ IAAVLFQDS   SRCMVPSTLPKPLCKS+ASNRVLFYE+ELCQAVAQNKLR
Sbjct:  181 RSRQEMLLTMTPRPTEHWPFMSKGSGKGIFMSTPHTPKAPRHGPRPPSRIKITEMKSIAAVLFQDSTLSSRCMVPSTLPKPLCKSVASNRVLFYEEELCQAVAQNKLR 288
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: V7CH17_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G265700g PE=4 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.922e-57
Identity = 89/108 (82.41%), Postives = 102/108 (94.44%), Query Frame = 2 
Query:    2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 325
            RSRQE+LSTMTPRPT+HWPF SKG+GKG+ + SPHTPKAPRHGPRPPSR+K++E+RQ+AAVLF +SAFPSRC+VPS +PKPL KSLASNRVLFYEDELCQAVAQNKLR
Sbjct:  167 RSRQEMLSTMTPRPTEHWPFLSKGDGKGVRVPSPHTPKAPRHGPRPPSRLKISEMRQVAAVLFPESAFPSRCLVPSVIPKPLYKSLASNRVLFYEDELCQAVAQNKLR 274
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: W9SMW8_9ROSA (F-box protein OS=Morus notabilis GN=L484_026641 PE=4 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.978e-57
Identity = 89/108 (82.41%), Postives = 99/108 (91.67%), Query Frame = 2 
Query:    2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 325
            RSRQE+L TMTPRPT+HWPF SKG+GKGI L SPHTPKAPR GPRPPSR+K +E+RQ+AAVLFQ+SA P+RCMVPS L KPLCKSLASNRVLFYE+ELCQAVAQNKLR
Sbjct:  155 RSRQEMLRTMTPRPTEHWPFASKGDGKGIWLPSPHTPKAPRQGPRPPSRLKASEVRQVAAVLFQESALPARCMVPSVLAKPLCKSLASNRVLFYEEELCQAVAQNKLR 262
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: A0A0B2RUP8_GLYSO (F-box protein OS=Glycine soja GN=glysoja_033026 PE=4 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 7.749e-57
Identity = 86/108 (79.63%), Postives = 99/108 (91.67%), Query Frame = 2 
Query:    2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 325
            RSRQE+LSTMTPRPT+HWPF  KG+GKG+ + SPHTPKAPRHGPRPPSR+K++E+RQ+ AVLF +SAFPS C+VPS + KPLCKSLASNRVLFYEDELCQAVAQNKLR
Sbjct:   81 RSRQEMLSTMTPRPTEHWPFLCKGDGKGVRIPSPHTPKAPRHGPRPPSRLKISEMRQVTAVLFPESAFPSHCLVPSVISKPLCKSLASNRVLFYEDELCQAVAQNKLR 188
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Match: A0A068U0L4_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_7 OS=Coffea canephora GN=GSCOC_T00037037001 PE=4 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 1.058e-56
Identity = 88/108 (81.48%), Postives = 99/108 (91.67%), Query Frame = 2 
Query:    2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSAFPSRCMVPSTLPKPLCKSLASNRVLFYEDELCQAVAQNKLR 325
            R+RQE+L TMTP PTDHWPF SKG+GKGI + SPHTPKAPRHGPRPPSR+K TE+RQIAAVLFQ+SAFPSRC+VPS L +P+CKSLASNR LFYE+ELCQAVAQNKLR
Sbjct:  188 RTRQEMLRTMTPLPTDHWPFMSKGDGKGIWIPSPHTPKAPRHGPRPPSRLKFTEMRQIAAVLFQESAFPSRCLVPSALSQPICKSLASNRALFYEEELCQAVAQNKLR 295
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy Swiss-Prot
Match: FB248_ARATH (F-box protein At4g35930 OS=Arabidopsis thaliana GN=At4g35930 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 2.905e-37
Identity = 71/111 (63.96%), Postives = 83/111 (74.77%), Query Frame = 2 
Query:    2 RSRQEVLSTMTPRPTDHWPFTSKGEGKGIMLKSPHTPKAPRHGPRPPSRVKVTELRQIAAVLFQDSA-FPSRCMVPSTLPKP-LCKSLASN--RVLFYEDELCQAVAQNKL 322
            RSRQE+L  MTP P + WPF  +G+G   M+ SPHTPKAP+H PRPPSR K+ E++QI AVLFQD   FPSRC+VPS L +P L K +A    RVLFYEDELCQAVAQN L
Sbjct:  211 RSRQEMLRVMTPVPINRWPF-RRGDGNPTMVSSPHTPKAPKHAPRPPSRTKLAEMKQITAVLFQDQTPFPSRCIVPSVLQRPTLFKPMAPKHPRVLFYEDELCQAVAQNNL 320
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0PT17_GOSAR3.767e-5986.11Uncharacterized protein OS=Gossypium arboreum GN=F... [more]
B9SYT6_RICCO4.482e-5985.19Putative uncharacterized protein OS=Ricinus commun... [more]
A0A0B0PUN9_GOSAR5.726e-5986.11Uncharacterized protein OS=Gossypium arboreum GN=F... [more]
A5AZ75_VITVI2.195e-5886.92Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A068VHN2_COFCA3.929e-5881.48Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
B9MXD0_POPTR4.000e-5882.41Uncharacterized protein OS=Populus trichocarpa GN=... [more]
V7CH17_PHAVU1.922e-5782.41Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
W9SMW8_9ROSA2.978e-5782.41F-box protein OS=Morus notabilis GN=L484_026641 PE... [more]
A0A0B2RUP8_GLYSO7.749e-5779.63F-box protein OS=Glycine soja GN=glysoja_033026 PE... [more]
A0A068U0L4_COFCA1.058e-5681.48Coffea canephora DH200=94 genomic scaffold, scaffo... [more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0014722 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FB248_ARATH2.905e-3763.96F-box protein At4g35930 OS=Arabidopsis thaliana GN... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34049:SF2SUBFAMILY NOT NAMEDcoord: 1..99
NoneNo IPR availablePANTHERPTHR34049FAMILY NOT NAMEDcoord: 1..99

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0014722 ID=g.arboreum_cottongen_reftransV1_0014722; Name=g.arboreum_cottongen_reftransV1_0014722; organism=Gossypium arboreum; type=contig; length=568bp
TCGTTCAAGGCAAGAGGTGCTTAGCACAATGACACCAAGGCCTACCGATC
ACTGGCCCTTTACGAGCAAGGGAGAAGGCAAAGGTATTATGTTAAAAAGC
CCACACACTCCAAAAGCTCCACGACACGGTCCACGGCCACCTTCTCGTGT
TAAAGTGACCGAGTTGAGGCAAATCGCTGCAGTGCTCTTTCAAGATTCTG
CATTCCCTTCGAGATGCATGGTACCCTCTACTCTCCCTAAACCATTATGC
AAATCTTTGGCTTCGAATCGAGTTTTATTTTACGAAGATGAGTTATGCCA
AGCTGTTGCTCAAAATAAGCTTCGTTGATATATTCCCCAGTGTTAGAAAA
TATCATAAAGCTGGATTCCACTTGTATATAGTTATATTTTTTTGCCCATT
TCTATACAGGAGATTATAGTTAATAGAGTCAGAAGTATCAGATATGAGGT
TTTGTAGGCTTTGCTTGGGGAGTATTAGGTTATATATATGAAACTTTATA
TGAATCTTATATGCATTAAGGGTTTGAAGATTTTAGAGGATAAATGTGGT
TTTTTTTCACAATAATAG
back to top