g.arboreum_cottongen_reftransV1_0021584, g.arboreum_cottongen_reftransV1_0021584 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0021584
Unique Nameg.arboreum_cottongen_reftransV1_0021584
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1262
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr3chromosomeg.arboreum_cottongen_reftransV1_0021584:1..1262 .
Chr3:382984..390828 +
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0021584 vs. ExPASy TrEMBL
Match: A0A078D308_BRANA (BnaC07g02520D protein OS=Brassica napus GN=BnaC07g02520D PE=4 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 3.296e-110
Identity = 157/239 (65.69%), Postives = 194/239 (81.17%), Query Frame = 3 
Query:  123 VAGEREAEEFTLVARKPYFDLPTACPICLPLFIYLKLAHFPFRLSFNSIFPDSDQIPYVESGTYVAYNNENSGVVECLKKDGIVDLDSEFQSAPDWVSIQAMINSWLADALTYELWVGTDGRSAYKIYYSDLSWPIGKVLFLKQVYSVKQRLGITKDNAEHREDEIYRRAKIAYGALSTKLGEQNFLFDDRPSSLDATFLGHVLVTLHALPDTSVLRSKVLEHDNIVRYAEKLKTELIE 839
            + G+++   FTLV RKP F LPTACP CLP +IYLKLA  PF+L+FNS FPDSD++PY E+GTYVAYNN++ GV+E LKKDG+V+LDS+ QS PD++S++A+I SWL +AL YE WVGT+G SA+KIYYSDL W I KVLF KQ Y  K RLGI K+N+E RE +IY+RA  AY ALST+LGEQ FLF+DRPSSLDA FL H+L T+  LP+TSVLR+K+LEH N+VRYAEKLK E +E
Sbjct:    1 MEGDQDTSGFTLVTRKPCFGLPTACPNCLPAYIYLKLAQLPFQLAFNSTFPDSDELPYFETGTYVAYNNDDGGVIEKLKKDGVVNLDSQLQSLPDYLSLKALILSWLEEALAYETWVGTEGVSAWKIYYSDLPWVISKVLFYKQTYMAKTRLGIIKENSEEREKQIYKRASDAYEALSTRLGEQKFLFEDRPSSLDAFFLSHILFTIQVLPETSVLRTKLLEHGNLVRYAEKLKLEFLE 239
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0021584 vs. ExPASy TrEMBL
Match: A0A0D3D251_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 3.296e-110
Identity = 157/239 (65.69%), Postives = 194/239 (81.17%), Query Frame = 3 
Query:  123 VAGEREAEEFTLVARKPYFDLPTACPICLPLFIYLKLAHFPFRLSFNSIFPDSDQIPYVESGTYVAYNNENSGVVECLKKDGIVDLDSEFQSAPDWVSIQAMINSWLADALTYELWVGTDGRSAYKIYYSDLSWPIGKVLFLKQVYSVKQRLGITKDNAEHREDEIYRRAKIAYGALSTKLGEQNFLFDDRPSSLDATFLGHVLVTLHALPDTSVLRSKVLEHDNIVRYAEKLKTELIE 839
            + G+++   FTLV RKP F LPTACP CLP +IYLKLA  PF+L+FNS FPDSD++PY E+GTYVAYNN++ GV+E LKKDG+V+LDS+ QS PD++S++A+I SWL +AL YE WVGT+G SA+KIYYSDL W I KVLF KQ Y  K RLGI K+N+E RE +IY+RA  AY ALST+LGEQ FLF+DRPSSLDA FL H+L T+  LP+TSVLR+K+LEH N+VRYAEKLK E +E
Sbjct:    1 MEGDQDTSGFTLVTRKPCFGLPTACPNCLPAYIYLKLAQLPFQLAFNSTFPDSDELPYFETGTYVAYNNDDGGVIEKLKKDGVVNLDSQLQSLPDYLSLKALILSWLEEALAYETWVGTEGVSAWKIYYSDLPWVISKVLFYKQTYMAKTRLGIIKENSEEREKQIYKRASDAYEALSTRLGEQKFLFEDRPSSLDAFFLSHILFTIQVLPETSVLRTKLLEHGNLVRYAEKLKLEFLE 239
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0021584 vs. ExPASy TrEMBL
Match: M4FBU6_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra038562 PE=4 SV=1)

HSP 1 Score: 338.191 bits (866), Expect = 6.175e-110
Identity = 158/234 (67.52%), Postives = 192/234 (82.05%), Query Frame = 3 
Query:  123 VAGEREAEEFTLVARKPYFDLPTACPICLPLFIYLKLAHFPFRLSFNSIFPDSDQIPYVESGTYVAYNNENSGVVECLKKDGIVDLDSEFQSAPDWVSIQAMINSWLADALTYELWVGTDGRSAYKIYYSDLSWPIGKVLFLKQVYSVKQRLGITKDNAEHREDEIYRRAKIAYGALSTKLGEQNFLFDDRPSSLDATFLGHVLVTLHALPDTSVLRSKVLEHDNIVRYAEKLK 824
            + G+++  +FTLV RKP F LPTACP CLP +IYLKLA  PF+L+FNS FPDS+++PY ESGTYVAYNNE+ GV+E LKKDGIV+LDS+ QS PD++S++A+I SWL +ALTYE+WVGT+G  A KIYYSDL W IGKVLF KQ Y  K RLG+TK+NAE RE  IY+RA  AY ALST+LGEQ FLF+DRPSSLDA FL H+L T+  LP+TSVLR K+LEH N+VRYAE+LK
Sbjct:    1 MEGDQDTSDFTLVTRKPCFGLPTACPNCLPAYIYLKLAQLPFQLAFNSTFPDSEELPYFESGTYVAYNNEDGGVIEKLKKDGIVNLDSQLQSLPDYLSLKALIVSWLDEALTYEIWVGTEGVCASKIYYSDLPWVIGKVLFYKQTYLTKNRLGLTKENAEQREKLIYKRASEAYEALSTRLGEQKFLFEDRPSSLDAFFLSHMLFTIQVLPETSVLRRKLLEHSNLVRYAERLK 234
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0021584 vs. ExPASy TrEMBL
Match: A0A0D3E3F7_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 1.469e-109
Identity = 157/234 (67.09%), Postives = 193/234 (82.48%), Query Frame = 3 
Query:  123 VAGEREAEEFTLVARKPYFDLPTACPICLPLFIYLKLAHFPFRLSFNSIFPDSDQIPYVESGTYVAYNNENSGVVECLKKDGIVDLDSEFQSAPDWVSIQAMINSWLADALTYELWVGTDGRSAYKIYYSDLSWPIGKVLFLKQVYSVKQRLGITKDNAEHREDEIYRRAKIAYGALSTKLGEQNFLFDDRPSSLDATFLGHVLVTLHALPDTSVLRSKVLEHDNIVRYAEKLK 824
            + G+++  +FTLV RKP F LPTACP CLP +IYLKLA  PF+L+FNS FPDS+++PY ESGTYVAYNNE+ GV+E L+KDGIV+LDS+ QS PD++S++A+I SWL +ALTYE+WVGT+G SA KIYYSDL W IGKVLF KQ Y  K+RLG+TK+NAE RE  IY+RA  AY ALST+LGEQ FLF+DRPSSLDA FL H+L T+  LP+TSVLR K+LE  N+VRYAE+LK
Sbjct:    1 MEGDQDTSDFTLVTRKPCFGLPTACPNCLPAYIYLKLAQLPFQLAFNSTFPDSEELPYFESGTYVAYNNEDGGVIEKLEKDGIVNLDSQLQSLPDYLSLKALIVSWLDEALTYEIWVGTEGASASKIYYSDLPWVIGKVLFYKQTYLTKKRLGLTKENAEQREKLIYKRASEAYEALSTRLGEQKFLFEDRPSSLDAFFLSHMLFTIQVLPETSVLRHKLLEQSNLVRYAERLK 234
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0021584 vs. ExPASy TrEMBL
Match: R0G5E3_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10013910mg PE=4 SV=1)

HSP 1 Score: 339.732 bits (870), Expect = 1.627e-109
Identity = 157/239 (65.69%), Postives = 190/239 (79.50%), Query Frame = 3 
Query:  123 VAGEREAEEFTLVARKPYFDLPTACPICLPLFIYLKLAHFPFRLSFNSIFPDSDQIPYVESGTYVAYNNENSGVVECLKKDGIVDLDSEFQSAPDWVSIQAMINSWLADALTYELWVGTDGRSAYKIYYSDLSWPIGKVLFLKQVYSVKQRLGITKDNAEHREDEIYRRAKIAYGALSTKLGEQNFLFDDRPSSLDATFLGHVLVTLHALPDTSVLRSKVLEHDNIVRYAEKLKTELIE 839
            + G++E E +TLVARKP FDLPTACP CLP +IYLKLA  PF L+FNS FPDSD++PY E+GTYVAYNNE+ GV+E LKKDGIV+LD   Q+ P+++S++A+I SWL +ALTYE+WVGT+G S  KIYYSDL W I K LF KQ Y  K RLGITK+ AE RE +IY+RA  AY ALST+LGEQ FLF+DRPSSLDA  L H+L  + ALP+TS LR K+LEH N+VRYAEKLK E +E
Sbjct:   75 MEGDQETEVYTLVARKPSFDLPTACPNCLPAYIYLKLAQLPFELAFNSTFPDSDELPYFENGTYVAYNNEDGGVIEKLKKDGIVNLDVPLQTLPEYLSLKALIVSWLGEALTYEIWVGTEGISTSKIYYSDLPWVISKALFYKQTYMAKNRLGITKETAEQREKQIYKRASEAYEALSTRLGEQKFLFEDRPSSLDAFLLSHILFIIQALPETSALRCKLLEHSNLVRYAEKLKAEFLE 313
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0021584 vs. ExPASy Swiss-Prot
Match: MTX_ARATH (Mitochondrial outer membrane import complex protein METAXIN OS=Arabidopsis thaliana GN=MTX1 PE=1 SV=1)

HSP 1 Score: 340.887 bits (873), Expect = 7.141e-113
Identity = 161/237 (67.93%), Postives = 191/237 (80.59%), Query Frame = 3 
Query:  129 GEREAEEFTLVARKPYFDLPTACPICLPLFIYLKLAHFPFRLSFNSIFPDSDQIPYVESGTYVAYNNENSGVVECLKKDGIVDLDSEFQSAPDWVSIQAMINSWLADALTYELWVGTDGRSAYKIYYSDLSWPIGKVLFLKQVYSVKQRLGITKDNAEHREDEIYRRAKIAYGALSTKLGEQNFLFDDRPSSLDATFLGHVLVTLHALPDTSVLRSKVLEHDNIVRYAEKLKTELIE 839
            G++E   +TLVARKP FDLPTACP CLP +IYLKLA  PF L+FNS FPDSD++PY ES TYVAYNNE+ GV+E LKKDGIV+LDS+ QS  D++S++A+I SWL +ALTYE+WVGT+G S  KIYYSDL W I KVLF KQ Y  K RLGITK+NAE RE +IY+RA  AY ALST+LGEQ FLF+DRPSSLDA  L H+L  + ALP TSVLR K+LEH N+VRYAEKLK+E +E
Sbjct:    3 GDQETNVYTLVARKPSFDLPTACPNCLPAYIYLKLAQLPFELAFNSTFPDSDELPYFESDTYVAYNNEDGGVIEKLKKDGIVNLDSQLQSLSDYLSLKALIVSWLEEALTYEIWVGTEGISTSKIYYSDLPWVISKVLFYKQTYLAKNRLGITKENAEQREKQIYKRASEAYEALSTRLGEQKFLFEDRPSSLDAFLLSHILFIIQALPVTSVLRCKLLEHSNLVRYAEKLKSEFLE 239
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0021584 vs. ExPASy Swiss-Prot
Match: MTX2_HUMAN (Metaxin-2 OS=Homo sapiens GN=MTX2 PE=1 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 3.952e-9
Identity = 51/221 (23.08%), Postives = 97/221 (43.89%), Query Frame = 3 
Query:  207 LPLFIYLKLAHFPFRLSFNS---IFPDSDQIPYVESGTYVAYNNENSGVVECLKKDG--IVDLDSEFQSAPDWVSIQAMINSWLADALTYELWV--GTDGRSAYKIYYSDLSWPIGKVLFLKQVYSVKQRL---GITKDNAEHREDEIYRRAKIAYGALSTKLGEQNFLFDDRPSSLDATFLGHVLVTLHALPDTSVLRSKVLEHDNIVRYAEKLKTELIE 839
            L +  +L++ + P ++   +       S ++P++  G  V   +E   +V+ +K  G  + D   E Q A +  +   ++N+ L  A  Y  W    T G   +  Y S   WP+  +L  ++ + VK+++   G  K       D++         ALS +LG Q + F+ +P+ LDA   GH+   L        L  KV  + N++ +  +++    E
Sbjct:   42 LAVQAFLQMCNLPIKVVCRANAEYMSPSGKVPFIHVGNQVV--SELGPIVQFVKAKGHSLSDGLEEVQKA-EMKAYMELVNNMLLTAELYLQWCDEATVGEITHARYGSPYPWPLNHILAYQKQWEVKRKMKAIGWGKKTL----DQVLEDVDQCCQALSQRLGTQPYFFNKQPTELDALVFGHLYTILTTQLTNDELSEKVKNYSNLLAFCRRIEQHYFE 255
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0021584 vs. ExPASy Swiss-Prot
Match: MTX2_PIG (Metaxin-2 OS=Sus scrofa GN=MTX2 PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 6.538e-9
Identity = 51/219 (23.29%), Postives = 97/219 (44.29%), Query Frame = 3 
Query:  207 LPLFIYLKLAHFPFRLSFNS---IFPDSDQIPYVESGTYVAYNNENSGVVECLKKDG--IVDLDSEFQSAPDWVSIQAMINSWLADALTYELWV--GTDGRSAYKIYYSDLSWPIGKVLFLKQVYSVKQRL-GITKDNAEHREDEIYRRAKIAYGALSTKLGEQNFLFDDRPSSLDATFLGHVLVTLHALPDTSVLRSKVLEHDNIVRYAEKLKTELIE 839
            L +  +L++ + P ++   +       S ++P++  G  V   +E   +V+ +K  G  + D   E Q A +  +   ++N+ L  A  Y  W    T G   +  Y S   WP+  +L  ++ + VK+++  I   N     D++         ALS +LG Q + F+ +P+ LDA   GH+   L        L  KV  + N++ +  +++    E
Sbjct:   42 LAVQAFLQMCNLPIKVVCRANAEYMSPSGKVPFIHVGNQVV--SELGPIVQFVKAKGHSLSDGLDEVQKA-EMKAYMELVNNMLLTAELYLQWCDEATVGEITHARYGSPYPWPLNHILAYQKQWEVKRKMKAIGWGN--KTLDQVLEDVDQCCQALSQRLGTQPYFFNKQPTELDALVFGHLYTILTTQLTNDELSEKVKNYSNLLAFCRRIEQHYFE 255
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0021584 vs. ExPASy Swiss-Prot
Match: MTX2_MOUSE (Metaxin-2 OS=Mus musculus GN=Mtx2 PE=1 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.354e-8
Identity = 51/219 (23.29%), Postives = 97/219 (44.29%), Query Frame = 3 
Query:  207 LPLFIYLKLAHFPFRLSFNS---IFPDSDQIPYVESGTYVAYNNENSGVVECLKKDG--IVDLDSEFQSAPDWVSIQAMINSWLADALTYELWV--GTDGRSAYKIYYSDLSWPIGKVLFLKQVYSVKQRL-GITKDNAEHREDEIYRRAKIAYGALSTKLGEQNFLFDDRPSSLDATFLGHVLVTLHALPDTSVLRSKVLEHDNIVRYAEKLKTELIE 839
            L +  +L++ + P ++   +       S ++P++  G  V   +E   +V+ +K  G  + D   E Q A +  +   ++N+ L  A  Y  W    T G      Y S   WP+  +L  ++ + VK+++  I   N     D++         ALS +LG Q + F+ +P+ LDA   GH+   L     +  L  KV  + N++ +  +++    E
Sbjct:   42 LAVQAFLQMCNLPVKVVCRANAEYMSPSGKVPFIHVGNQVV--SELGPIVQFVKAKGHSLSDGLDEVQKA-EMKAYMELVNNMLLTAELYLQWCDEATVGEITIARYGSPYPWPLNHILAYQKQWEVKRKMKAIGWGN--KTLDQVLEDVDQCCQALSQRLGTQPYFFNKQPTELDALVFGHLYTILTTQLTSDELSEKVKNYSNLLAFCRRIEQHYFE 255
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0021584 vs. ExPASy Swiss-Prot
Match: FAXC_RAT (Failed axon connections homolog OS=Rattus norvegicus GN=Faxc PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 2.419e-8
Identity = 57/234 (24.36%), Postives = 99/234 (42.31%), Query Frame = 3 
Query:  168 KPYFDLPTACPICLPLFIYLKLAHFPFRLSFNSIFPDSDQIPYVESGTYVAYNNEN-SG---VVECLKKDGIVDLDSEFQSAPDWVS--IQAMINSWLADALTYELWVGTDGRSAYKIYYSDLSWPIGKVLFLKQVYSVKQRLGITKDN------AEHREDEIYRRAKIAYGALSTKLGEQNFLFDDRPSSLDATFLGHVLVTLHALPDTSVLRSKVLEHDNIVRYAEKLKTEL 833
            +P   +P+  P CL +  YL++A  P++  F        ++P++E      YNNE  SG   +++ L++   V+L+         VS  +  M+       L Y  WV     +   +  S    P   +L     +  K   GI K            E+EIY   +    +L+  LG++ ++   + S+LDAT  GH+   +  LP T   R    E  N+  Y E+++ + 
Sbjct:  107 RPNNGVPSLSPFCLKMETYLRMADLPYQNYFGGKLSAQGKMPWIE------YNNEKVSGTEFIIDFLEEKLGVNLNKNLGPHERAVSRAVTKMVEEHFYWTLAYCQWVDNLNETRKMLSLSGGG-PFSNLLRWVVCHITK---GIVKREMHGHGIGRFSEEEIYMLMEKDMRSLAGLLGDKKYIMGPKLSTLDATVFGHLAQAMWTLPGTRPERLIKGELINLAMYCERIRRKF 330
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0021584 vs. ExPASy Swiss-Prot
Match: FAXC_MOUSE (Failed axon connections homolog OS=Mus musculus GN=Faxc PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 2.620e-8
Identity = 57/234 (24.36%), Postives = 99/234 (42.31%), Query Frame = 3 
Query:  168 KPYFDLPTACPICLPLFIYLKLAHFPFRLSFNSIFPDSDQIPYVESGTYVAYNNEN-SG---VVECLKKDGIVDLDSEFQSAPDWVS--IQAMINSWLADALTYELWVGTDGRSAYKIYYSDLSWPIGKVLFLKQVYSVKQRLGITKDN------AEHREDEIYRRAKIAYGALSTKLGEQNFLFDDRPSSLDATFLGHVLVTLHALPDTSVLRSKVLEHDNIVRYAEKLKTEL 833
            +P   +P+  P CL +  YL++A  P++  F        ++P++E      YNNE  SG   +++ L++   V+L+         VS  +  M+       L Y  WV     +   +  S    P   +L     +  K   GI K            E+EIY   +    +L+  LG++ ++   + S+LDAT  GH+   +  LP T   R    E  N+  Y E+++ + 
Sbjct:  107 RPNNGVPSLSPFCLKMETYLRMADLPYQNYFGGKLSAQGKMPWIE------YNNEKVSGTEFIIDFLEEKLGVNLNKSLGPHERAVSRAVTKMVEEHFYWTLAYCQWVDNLNETRKMLSLSGGG-PFSNLLRWVVCHITK---GIVKREMHGHGIGRFSEEEIYMLMEKDMRSLAGLLGDKKYIMGPKLSTLDATVFGHLAQAMWTLPGTRPERLIKGELINLAMYCERIRRKF 330
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0021584 vs. ExPASy Swiss-Prot
Match: MTX3_DANRE (Metaxin-3 OS=Danio rerio GN=mtx3 PE=2 SV=2)

HSP 1 Score: 56.6102 bits (135), Expect = 1.240e-7
Identity = 60/240 (25.00%), Postives = 99/240 (41.25%), Query Frame = 3 
Query:  141 AEEFTLVARKPYFDLPTACPICLPLFIYLKLAHFPFRLSF-----NSIFPDSDQIPYVESGTYVAYNNENSGVVECLKKDGI-VDLDSEFQSAPDWVSIQAMINSWLADALTYELWVGTDGRS--AYKIYYSDLSWPIGKVLFLKQVYSVKQRLGITKD-----NAEHREDEIYRRAKIAYGALSTKLGEQNFLFDDRPSSLDATFLGHVLVTLHALPDTSVLRSKVLEHDNIVRYAEKL 821
            AE   L+     +DLP+     L +  Y K A     + F      +I     QI Y   GT V    E + ++  L+K     D +   +   D ++  A++   L  AL +  WV  +  +      + S   +P+   +  +Q      R+ +TK      N    E +IY  AK     LS +LG  NF F D P+SLDA   GH+   + A   +  L+  + + DN+ ++   +
Sbjct:    2 AEPIELLCWGGDWDLPSVQTDSLTVLAYAKFAGAELTVKFVDWTWRTITASVPQIHY--EGTTVT---EPTQILNFLRKQRFNADFELTAKQGADTMAYIALLEEKLRPALLHTFWVDAENYANLTRPWFTSHSPFPLNFFVPGRQASLALSRILLTKAESPLLNITEVEGKIYSEAKECLNLLSHRLGNFNFFFGDTPTSLDAFVFGHIAPLIKAPLPSGQLQKHLNQLDNLCQFCNTI 236
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0021584 vs. ExPASy Swiss-Prot
Match: FAXC_HUMAN (Failed axon connections homolog OS=Homo sapiens GN=FAXC PE=2 SV=2)

HSP 1 Score: 56.6102 bits (135), Expect = 1.679e-7
Identity = 55/234 (23.50%), Postives = 99/234 (42.31%), Query Frame = 3 
Query:  168 KPYFDLPTACPICLPLFIYLKLAHFPFRLSFNSIFPDSDQIPYVESGTYVAYNNEN-SG---VVECLKKDGIVDLDSEFQSAPDWVS--IQAMINSWLADALTYELWVGTDGRSAYKIYYSDLSWPIGKVLFLKQVYSVKQRLGITKDN------AEHREDEIYRRAKIAYGALSTKLGEQNFLFDDRPSSLDATFLGHVLVTLHALPDTSVLRSKVLEHDNIVRYAEKLKTEL 833
            +P   +P+  P CL +  YL++A  P++  F        ++P++E      YN+E  SG   +++ L++   V+L+         +S  +  M+       L Y  WV     +   +  S    P   +L     +  K   GI K            E+EIY   +    +L+  LG++ ++   + S+LDAT  GH+   +  LP T   R    E  N+  Y E+++ + 
Sbjct:  107 RPNNGVPSLSPFCLKMETYLRMADLPYQNYFGGKLSAQGKMPWIE------YNHEKVSGTEFIIDFLEEKLGVNLNKNLGPHERAISRAVTKMVEEHFYWTLAYCQWVDNLNETRKMLSLSGGG-PFSNLLRWVVCHITK---GIVKREMHGHGIGRFSEEEIYMLMEKDMRSLAGLLGDKKYIMGPKLSTLDATVFGHLAQAMWTLPGTRPERLIKGELINLAMYCERIRRKF 330
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0021584 vs. ExPASy Swiss-Prot
Match: FAXC_XENTR (Failed axon connections homolog OS=Xenopus tropicalis GN=faxc PE=3 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 5.959e-7
Identity = 50/225 (22.22%), Postives = 95/225 (42.22%), Query Frame = 3 
Query:  168 KPYFDLPTACPICLPLFIYLKLAHFPFRLSFNSIFPDSDQIPYVESGTYVAYNNEN-SG---VVECLKKDGIVDLDSEFQSAPDWVS--IQAMINSWLADALTYELWVGTDGRSAYKIYYSDLSWPIGKVLFLKQVYSVKQRLGITKDNAEHREDEIYRRAKIAYGALSTKLGEQNFLFDDRPSSLDATFLGHVLVTLHALPDTSVLRSKVLEHDNIVRYAEKLK 824
            +P   +P+  P CL +  YL++A  P++  F+       ++P++E      YN+   SG   +++ L++   V+L+         VS  +  M+       L Y  WV     +   +  +     + K +       + +R    +      E+EIYR  +    +L+  LG++ +L   + S+LDAT  GH+   L     T        E  N+  Y E+++
Sbjct:  106 RPNNGVPSLSPFCLKIETYLRMADLPYQNYFDGKLSPQGKMPWIE------YNHTRVSGTEFIIDFLEEKLGVNLNKHLNPHQRAVSRAVTKMVEEHFYWTLAYCQWVENLDETQKMLNITGPLSDLLKWILCHLTKGIVKREMYGQGIGRFSEEEIYRLMEKDMRSLAGLLGDKKYLMGPKFSTLDATVFGHIANALWGTQGTYKEEGIAGELINLAMYCERIR 324
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0021584 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A078D308_BRANA3.296e-11065.69BnaC07g02520D protein OS=Brassica napus GN=BnaC07g... [more]
A0A0D3D251_BRAOL3.296e-11065.69Uncharacterized protein OS=Brassica oleracea var. ... [more]
M4FBU6_BRARP6.175e-11067.52Uncharacterized protein OS=Brassica rapa subsp. pe... [more]
A0A0D3E3F7_BRAOL1.469e-10967.09Uncharacterized protein OS=Brassica oleracea var. ... [more]
R0G5E3_9BRAS1.627e-10965.69Uncharacterized protein OS=Capsella rubella GN=CAR... [more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0021584 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MTX_ARATH7.141e-11367.93Mitochondrial outer membrane import complex protei... [more]
MTX2_HUMAN3.952e-923.08Metaxin-2 OS=Homo sapiens GN=MTX2 PE=1 SV=1[more]
MTX2_PIG6.538e-923.29Metaxin-2 OS=Sus scrofa GN=MTX2 PE=2 SV=1[more]
MTX2_MOUSE1.354e-823.29Metaxin-2 OS=Mus musculus GN=Mtx2 PE=1 SV=1[more]
FAXC_RAT2.419e-824.36Failed axon connections homolog OS=Rattus norvegic... [more]
FAXC_MOUSE2.620e-824.36Failed axon connections homolog OS=Mus musculus GN... [more]
MTX3_DANRE1.240e-725.00Metaxin-3 OS=Danio rerio GN=mtx3 PE=2 SV=2[more]
FAXC_HUMAN1.679e-723.50Failed axon connections homolog OS=Homo sapiens GN... [more]
FAXC_XENTR5.959e-722.22Failed axon connections homolog OS=Xenopus tropica... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033468Metaxin, glutathione S-transferase domainPFAMPF17171GST_C_6coord: 197..259
e-value: 3.7E-16
score: 58.5
IPR017410Mitochondrial outer membrane transport complex protein, metaxinPIRSFPIRSF038150Metaxincoord: 33..349
e-value: 4.0E-100
score: 332.5
IPR012336Thioredoxin-like foldPFAMPF17172GST_N_4coord: 53..145
e-value: 1.6E-16
score: 60.7
NoneNo IPR availablePANTHERPTHR12289:SF38METAXIN-2coord: 18..348
NoneNo IPR availablePANTHERPTHR12289METAXIN RELATEDcoord: 18..348
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 317..336
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 337..353
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..316
NoneNo IPR availableTMHMMTMhelixcoord: 317..336

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0021584 ID=g.arboreum_cottongen_reftransV1_0021584; Name=g.arboreum_cottongen_reftransV1_0021584; organism=Gossypium arboreum; type=contig; length=1262bp
AAACGCTTTGTTAAACCCCTACTCTCAAAACTCTTTTCAGCTTGCTCTGG
TATTTTTACCCATCGGAGCAAATTACAAACAGCCATAGCTGCTTAGTGAA
AAAGAAAAAGAAAATGGAGCAAGTGGCGGGTGAAAGGGAAGCCGAAGAGT
TCACACTGGTCGCAAGGAAGCCTTACTTCGATCTCCCAACTGCGTGCCCT
ATTTGTTTGCCGCTTTTCATTTATCTCAAGCTTGCCCACTTTCCCTTTCG
TTTATCTTTCAATTCAATCTTCCCTGATTCAGATCAAATTCCTTATGTTG
AATCTGGTACTTACGTTGCCTACAACAACGAGAATAGTGGGGTTGTTGAG
TGTTTAAAGAAAGATGGTATCGTTGATCTGGACTCTGAATTCCAATCTGC
CCCAGATTGGGTATCGATACAAGCTATGATTAACTCTTGGTTAGCTGATG
CATTGACGTACGAACTATGGGTGGGTACCGATGGAAGATCAGCCTACAAG
ATTTATTATTCTGATCTTTCATGGCCAATAGGAAAAGTTCTTTTCCTAAA
GCAAGTGTATAGTGTTAAACAACGTCTTGGAATTACTAAAGACAATGCCG
AACACAGAGAAGATGAGATTTACAGGAGAGCAAAAATTGCTTATGGTGCT
CTATCTACTAAGTTAGGAGAACAGAACTTCCTCTTTGATGATAGGCCATC
AAGCTTGGATGCAACTTTTCTCGGACATGTTCTTGTCACCCTTCATGCAC
TACCTGACACGTCAGTGCTCCGAAGCAAAGTCTTGGAGCATGACAATATT
GTCAGATATGCCGAAAAACTTAAAACGGAGTTGATAGAGTCTGGTTCATC
ATCTTCTGGTCCACAATTTCGCTCAGTCCCTTCATCGTCAACTCCGAGAA
AAGGTCCCTCAAATTGGAGTTCAAAGCCGAAGAGCAAGCCAAAAAGGGAG
AAAACAGAGGAGGAGAAAACTTTTAAGAGGAGGGCAAAATATTTTCTAGC
TGCACAGCTACTTGCGGTTCTGCTTTTCCTCTCCATGATGGGCGGTTATG
ATTCTGGTGACCTGGAGCTCGACGACGAAGATGAAGGCATCTCTTTCAAT
TGAAACAAATCTCTCAGTTACCGGGTACTCATTACTGACATTTTTCCCAT
TATTAGTGACAATGTTAGTGATCTGTTGAGGTTGAGCTATTAGTATTTGC
ATTAACATTGTGGTAAAAAATAAGAACATACATTTAAAGATTTGATTTAT
ACAATATTTACG
back to top
Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR033468Metaxin_GST
IPR017410Metaxin1/3
IPR012336Thioredoxin-like_fold
Vocabulary: Biological Process
TermDefinition
GO:0006626protein targeting to mitochondrion
Vocabulary: Cellular Component
TermDefinition
GO:0005741mitochondrial outer membrane