g.arboreum_cottongen_reftransV1_0010677, g.arboreum_cottongen_reftransV1_0010677 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0010677
Unique Nameg.arboreum_cottongen_reftransV1_0010677
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1094
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr6chromosomeg.arboreum_cottongen_reftransV1_0010677:1..1094 .
Chr6:18322529..18324905 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0010677 vs. ExPASy TrEMBL
Match: A0A068U1Q2_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_8 OS=Coffea canephora GN=GSCOC_T00039832001 PE=4 SV=1)

HSP 1 Score: 439.113 bits (1128), Expect = 1.224e-147
Identity = 229/287 (79.79%), Postives = 248/287 (86.41%), Query Frame = -3
Query:  151 TNDKTPASYSTKWADLHPDSQKFLLQIEERILEYRDESQRLDQCTRLYDSSVSNEGFELDASHIVQELGGISTAMERQKALLQELMSTVKDMLRNTEVAVRSFMMLRPRFVHSNTGGASNATAPSQVPGATTTPGSGVQPTAASMVPVFDFYHGLPKKPSPFLQYTVARFEKYLGECRQWIXXXXXXXXLNSDRNSINHASSLLQSLPKVMSNVHDFFVHVAAKVESIHQYIESMKTAYLADHRHRGDVNDPFLEADRRETAKQEAAAKRVHPTLHLPANSQPPTQV 1011
            TNDKTPA+YSTKWADLHPDSQKFLLQIEERILEYRDESQRLDQC+RLYDSSV   GFELDAS I QELGGI TAMER++A+ QELMS  KDML NTEVAVRSFMMLRPRF+HSN G A++ATAPSQ         +    T+A  VPVFDFY GLP+KPSPFLQ TVARFEKY+ ECRQWIEELEQLLLL++DRNS++ +SSLLQSLPKVM+NVH FFVHVAAK ESIHQYIESMKTAYLAD R RGD NDPFLEADRRETAK EAAA+RVHPTLHLPA SQP TQV
Sbjct:   83 TNDKTPATYSTKWADLHPDSQKFLLQIEERILEYRDESQRLDQCSRLYDSSVFIGGFELDASRIFQELGGICTAMERERAICQELMSVAKDMLHNTEVAVRSFMMLRPRFLHSNVGAATSATAPSQATAVAQASSNQAAATSA--VPVFDFYSGLPRKPSPFLQQTVARFEKYIAECRQWIEELEQLLLLDADRNSLDSSSSLLQSLPKVMANVHAFFVHVAAKAESIHQYIESMKTAYLADQRRRGDGNDPFLEADRRETAKLEAAARRVHPTLHLPAVSQPSTQV 367          
BLAST of g.arboreum_cottongen_reftransV1_0010677 vs. ExPASy TrEMBL
Match: D0VEB0_TOBAC (Putative uncharacterized protein (Fragment) OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 428.713 bits (1101), Expect = 2.114e-143
Identity = 227/287 (79.09%), Postives = 252/287 (87.80%), Query Frame = -3
Query:  151 TNDKTPASYSTKWADLHPDSQKFLLQIEERILEYRDESQRLDQCTRLYDSSVSNEGFELDASHIVQELGGISTAMERQKALLQELMSTVKDMLRNTEVAVRSFMMLRPRFVHSNTGGASNATAPSQVPGATTTPGSGVQPTAASMVPVFDFYHGLPKKPSPFLQYTVARFEKYLGECRQWIXXXXXXXXLNSDRNSINHASSLLQSLPKVMSNVHDFFVHVAAKVESIHQYIESMKTAYLADHRHRGDVNDPFLEADRRETAKQEAAAKRVHPTLHLPANSQPPTQV 1011
            TNDKTPA+YSTKWADLHPDSQK LLQIEERILEYRD+SQRLDQC+RLYDSSV+N+GFE+DAS  +QELGG+ST+MERQKA+LQELM  VKDML NTEVAVRSFMMLRPRF+  +   A++ATAPSQ  GAT    +  Q  +    PVFDFY G+PKKP+PFLQ TVARFEKYL ECRQW+EELEQL+LL+SDRNS+N +SSLLQSLPKVMSNVHDFFVHVAAKVESIHQYIESMKTAYLAD R RGD +DPFLEADRRETAK EAAA+RVHPTLHLPA SQP TQV
Sbjct:  179 TNDKTPATYSTKWADLHPDSQKLLLQIEERILEYRDKSQRLDQCSRLYDSSVANDGFEVDASRSIQELGGVSTSMERQKAILQELMVVVKDMLHNTEVAVRSFMMLRPRFLRQSAPAAASATAPSQASGATVAQTASTQAHSTPNAPVFDFYRGIPKKPTPFLQQTVARFEKYLLECRQWVEELEQLMLLDSDRNSMNSSSSLLQSLPKVMSNVHDFFVHVAAKVESIHQYIESMKTAYLADQRRRGDGSDPFLEADRRETAKLEAAARRVHPTLHLPAISQPSTQV 465          

HSP 2 Score: 154.836 bits (390), Expect = 9.947e-39
Identity = 77/102 (75.49%), Postives = 91/102 (89.22%), Query Frame = -3
Query:  625 EERILEYRDESQRLDQCTRLYDSSVSNEGFELDASHIVQELGGISTAMERQKALLQELMSTVKDMLRNTEVAVRSFMMLRPRFVHSNTGGASNATAPSQVPG 930
            EERILEYRD+SQRLDQC+RLYDSSV+N+GFE+DAS  +QELGG+ST+MERQKA+LQELM  VKDML NTEVAVRSFMMLRPRF+  +   A++ATAP Q+PG
Sbjct:    1 EERILEYRDKSQRLDQCSRLYDSSVANDGFEVDASRSIQELGGVSTSMERQKAILQELMVVVKDMLHNTEVAVRSFMMLRPRFLRQSAPAAASATAPFQIPG 102          
BLAST of g.arboreum_cottongen_reftransV1_0010677 vs. ExPASy TrEMBL
Match: V4MAI4_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10025060mg PE=4 SV=1)

HSP 1 Score: 424.091 bits (1089), Expect = 4.688e-142
Identity = 215/284 (75.70%), Postives = 237/284 (83.45%), Query Frame = -3
Query:  169 TNDKTPASYSTKWADLHPDSQKFLLQIEERILEYRDESQRLDQCTRLYDSSVSNEGFELDASHIVQELGGISTAMERQKALLQELMSTVKDMLRNTEVAVRSFMMLRPRFVHSNTGGASN-ATAPSQVPGATTTPGSG--VQPTAASMVPVFDFYHGLPKKPSPFLQYTVARFEKYLGECRQWIXXXXXXXXLNSDRNSINHASSLLQSLPKVMSNVHDFFVHVAAKVESIHQYIESMKTAYLADHRHRGDVNDPFLEADRRETAKQEAAAKRVHPTLHLPANS 1011
            TNDK PA+YSTKWADLHPDSQK LLQIEE+ILEYR ESQRLDQC+RLYDSSVS+EGFE DAS IVQELGGI+T M+RQKA+L ELM   KDMLRN E+AVRSFMML+PRF HS   G+ N  + PSQ  GA   P S    Q T  S+V V DFY G+PKKP+ FLQ TVARFEKYLGECRQW+EELEQLL L+SD+   N  +SLL+SLPKVMSNVHDFFVHVAAKVE+IHQYIESM+TAYLAD R RG+ NDPFLEADRRETAKQEAAAKRVHPTLHLPA S
Sbjct:   75 TNDKAPANYSTKWADLHPDSQKLLLQIEEKILEYRSESQRLDQCSRLYDSSVSSEGFEFDASRIVQELGGINTTMDRQKAVLHELMVVAKDMLRNAEIAVRSFMMLQPRFPHSKPVGSVNGGSQPSQTQGANPAPASSGQQQQTITSIVQVSDFYRGIPKKPTAFLQQTVARFEKYLGECRQWVEELEQLLALDSDK--YNRHASLLESLPKVMSNVHDFFVHVAAKVENIHQYIESMRTAYLADQRRRGECNDPFLEADRRETAKQEAAAKRVHPTLHLPATS 356          
BLAST of g.arboreum_cottongen_reftransV1_0010677 vs. ExPASy TrEMBL
Match: S8CTA1_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_04692 PE=4 SV=1)

HSP 1 Score: 416.001 bits (1068), Expect = 2.368e-139
Identity = 211/286 (73.78%), Postives = 236/286 (82.52%), Query Frame = -3
Query:  154 TNDKTPASYSTKWADLHPDSQKFLLQIEERILEYRDESQRLDQCTRLYDSSVSNEGFELDASHIVQELGGISTAMERQKALLQELMSTVKDMLRNTEVAVRSFMMLRPRFVHSNTGGASNATAPSQVPGATTTPGSGVQPTAASMVPVFDFYHGLPKKPSPFLQYTVARFEKYLGECRQWIXXXXXXXXLNSDRNSINHASSLLQSLPKVMSNVHDFFVHVAAKVESIHQYIESMKTAYLADHRHRGDVNDPFLEADRRETAKQEAAAKRVHPTLHLPANSQPPTQ 1011
            TNDK PASY TKWADLHPDSQK LLQ+EE+I+EYRDESQRLDQC+RLYDSS+   GFEL AS +VQELGGI  AMERQK  L+EL+S ++DMLR+TE+AVRSF+MLRPRF+H N   A + T PSQ    T T  S   P A S+VP+ DFY GLPKKPSPFLQ TVARF+K L ECRQ +EELEQLL+L S+ NS   +SSL QSLPKVM+NVHDFFVHVAAKVESIHQYIESMKTAYLAD R RGD NDPFLEADRRETAKQEAAA+R+HPTLHLPA SQP  Q
Sbjct:   38 TNDKAPASYGTKWADLHPDSQKCLLQVEEKIMEYRDESQRLDQCSRLYDSSIGTNGFELSASSMVQELGGIGIAMERQKVTLKELVSVIRDMLRHTELAVRSFVMLRPRFIHQNKLAAGSPTKPSQQLLVTQT--SSSPPAANSIVPILDFYSGLPKKPSPFLQQTVARFDKDLSECRQRVEELEQLLVLESE-NSYGRSSSLFQSLPKVMTNVHDFFVHVAAKVESIHQYIESMKTAYLADQRGRGDCNDPFLEADRRETAKQEAAARRIHPTLHLPAVSQPTGQ 320          
BLAST of g.arboreum_cottongen_reftransV1_0010677 vs. ExPASy TrEMBL
Match: W6JLZ4_NICBE (Nuclear pore complex protein Nup58a OS=Nicotiana benthamiana GN=NbNup58a PE=2 SV=1)

HSP 1 Score: 418.313 bits (1074), Expect = 4.222e-138
Identity = 234/322 (72.67%), Postives = 258/322 (80.12%), Query Frame = -3
Query:  151 TNDKTPASYSTKWADLHPDSQKFLLQIEERILEYRDESQRLDQCTRLYDSSVSNEGFELDASHIVQELGGISTAMERQKALLQELMSTVKDMLRNTEVAVRSFMMLRPRFVHSNTGGASNATAPSQVPGAT----------TTPGSGV---------------QPTAASMV----------PVFDFYHGLPKKPSPFLQYTVARFEKYLGECRQWIXXXXXXXXLNSDRNSINHASSLLQSLPKVMSNVHDFFVHVAAKVESIHQYIESMKTAYLADHRHRGDVNDPFLEADRRETAKQEAAAKRVHPTLHLPANSQPPTQV 1011
            TNDKTPA+YSTKWADLHPDSQK LLQIEERILEYRDESQRLDQC+RLYDSSV+N+GFELDAS  +QELGG+ST+MERQKA+LQELM  VKD+LRNTEV VRSFMMLRPRF+  +   A++ATAPSQ  GAT          +TP + V               Q T A +           PVFDFY G+PKKPSPFLQ TVARFEKYL ECRQW+EELEQL+LL+SDRNS+N +SSLLQSLPKVMSNVHDFFVHVAAKVESIHQYIESMKTAYLAD R RGD +DPFLEADRRETAK EAAA+RVHPTLHLPA SQP TQV
Sbjct:  149 TNDKTPATYSTKWADLHPDSQKLLLQIEERILEYRDESQRLDQCSRLYDSSVANDGFELDASRSIQELGGVSTSMERQKAILQELMVVVKDILRNTEVVVRSFMMLRPRFLRQSAPAAASATAPSQASGATVAQTASTQAHSTPNAPVFDFYRGIPKKPSLFLQQTVAQIASSQAHSTPNAPVFDFYRGVPKKPSPFLQQTVARFEKYLLECRQWVEELEQLMLLDSDRNSMNSSSSLLQSLPKVMSNVHDFFVHVAAKVESIHQYIESMKTAYLADQRRRGDGSDPFLEADRRETAKLEAAARRVHPTLHLPAISQPSTQV 470          
BLAST of g.arboreum_cottongen_reftransV1_0010677 vs. ExPASy Swiss-Prot
Match: NUP58_ARATH (Nuclear pore complex protein NUP58 OS=Arabidopsis thaliana GN=NUP58 PE=1 SV=1)

HSP 1 Score: 411.379 bits (1056), Expect = 1.492e-138
Identity = 215/293 (73.38%), Postives = 239/293 (81.57%), Query Frame = -3
Query:  151 TNDKTPASYSTKWADLHPDSQKFLLQIEERILEYRDESQRLDQCTRLYDSSVSNEGFELDASHIVQELGGISTAMERQKALLQELMSTVKDMLRNTEVAVRSFMMLRPRFVHSNTGGA--SNATAPSQVPGATTTPG-SGVQPTAASMVPVFDFYHGLPKKPSPFLQYTVARFEKYLGECRQWIXXXXXXXXLNSDRNSINHASSLLQSLPKVMSNVHDFFVHVAAKVESIHQYIESMKTAYLADHRHRGDVNDPFLEADRRETAKQEAAAKRVHPTLHLPA---NSQPPTQV 1011
            TNDK PA+YSTKWADLHPDSQK LLQIEE+ILE+R ESQRLDQC+RLYDSSVS+EGFE DAS IVQELGGI+TAM+RQKA+L ELM   KDMLRN E+AVRSFMML+PRF H   GG   S  + PSQ  G    P  SG Q    + V V DFY G+PKKP+ FL  TV RFEKYL ECRQW+EELEQLL L+SD+ S  HA SLL+SLPKVMSNVHDFFVHVAAKVESIHQYIESM+T+YLAD R RG+ +DPFLEADRRETAKQEAAAKRVHPTLHLPA   ++QP TQV
Sbjct:   97 TNDKAPANYSTKWADLHPDSQKLLLQIEEKILEHRSESQRLDQCSRLYDSSVSSEGFEFDASRIVQELGGINTAMDRQKAVLHELMIVAKDMLRNAEIAVRSFMMLQPRFPHWKQGGGVVSVGSQPSQGQGTNPAPASSGQQQAVTTTVQVSDFYRGIPKKPTAFLLQTVVRFEKYLNECRQWVEELEQLLALDSDKYS-RHA-SLLESLPKVMSNVHDFFVHVAAKVESIHQYIESMRTSYLADQRRRGECHDPFLEADRRETAKQEAAAKRVHPTLHLPASTTSTQPSTQV 387          
BLAST of g.arboreum_cottongen_reftransV1_0010677 vs. ExPASy Swiss-Prot
Match: PERA_ALOVR (Peroxidase A (Fragments) OS=Aloe vera PE=1 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 6.282e-9
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = -3
Query:  289 KVMSNVHDFFVHVAAKVESIHQYIESMKTAYLA 387
            +VMSNVHDFFVHVAAKVESIHQYIESM+   L+
Sbjct:   79 RVMSNVHDFFVHVAAKVESIHQYIESMRYGSLS 111          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0010677 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A068U1Q2_COFCA1.224e-14779.79Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
D0VEB0_TOBAC2.114e-14379.09Putative uncharacterized protein (Fragment) OS=Nic... [more]
V4MAI4_EUTSA4.688e-14275.70Uncharacterized protein OS=Eutrema salsugineum GN=... [more]
S8CTA1_9LAMI2.368e-13973.78Uncharacterized protein (Fragment) OS=Genlisea aur... [more]
W6JLZ4_NICBE4.222e-13872.67Nuclear pore complex protein Nup58a OS=Nicotiana b... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0010677 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NUP58_ARATH1.492e-13873.38Nuclear pore complex protein NUP58 OS=Arabidopsis ... [more]
PERA_ALOVR6.282e-981.82Peroxidase A (Fragments) OS=Aloe vera PE=1 SV=1[more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 98..118
NoneNo IPR availablePFAMPF15967Nucleoporin_FG2coord: 182..292
e-value: 3.3E-8
score: 32.4
IPR024882Nucleoporin p58/p45PANTHERPTHR13437NUCLEOPORIN P58/P45 NUCLEOPORIN-LIKE PROTEIN 1coord: 1..132
coord: 172..358

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0010677 ID=g.arboreum_cottongen_reftransV1_0010677; Name=g.arboreum_cottongen_reftransV1_0010677; organism=Gossypium arboreum; type=contig; length=1094bp
AAACAGAGAAGATGACATGGAAGAAGCAGGAGTAGAGGACGGTGTACTAA
AAAGAGACAATCCACCTCCCGAGGAAGCTGCTGATGTTGCTGCAGAAGTC
TGTGGGGCAGAGGCTGCAGCAGGAGCTGCTGAGCTGGCAAACAAGCCAGC
AACTTGAGTTGGCGGTTGTGAATTTGCAGGTAAATGCAAGGTTGGATGTA
CCCTCTTAGCAGCAGCTTCTTGTTTGGCAGTTTCTCTCCTATCAGCCTCA
AGAAAAGGATCATTAACATCTCCTCTGTGACGGTGATCAGCAAGATAAGC
TGTTTTCATTGATTCAATATATTGATGAATGCTTTCCACCTTGGCAGCCA
CATGAACAAAAAAGTCATGCACATTGGACATGACTTTTGGAAGAGATTGC
AATAAAGAGGATGCGTGATTGATAGAGTTTCTATCAGAATTCAAAAGGAG
AAGTTGTTCCAACTCTTCAATCCATTGGCGGCACTCACCCAAATACTTCT
CAAATCTAGCAACTGTATACTGTAGAAAGGGAGAAGGCTTCTTTGGAAGC
CCATGGTAAAAATCAAAAACTGGTACCATGGATGCAGCAGTTGGTTGAAC
CCCAGAACCTGGTGTTGTTGTTGCCCCTGGAACCTGGGATGGTGCAGTGG
CATTTGAAGCACCTCCTGTGTTTGAATGAACAAACCGTGGCCGAAGCATC
ATGAAAGAACGAACAGCAACCTCTGTGTTCCTTAACATATCTTTCACAGT
ACTCATCAATTCCTGCAGCAAAGCTTTCTGCCTCTCCATGGCAGTACTGA
TTCCTCCAAGTTCCTGAACAATGTGGCTGGCATCAAGCTCGAAGCCTTCA
TTGGACACCGAAGAATCATAAAGGCGAGTACACTGGTCTAACCTTTGGCT
TTCATCCCTATACTCCAATATCCTTTCCTCAATTTGAAGCAGAAATTTTT
GAGAATCAGGATGGAGATCAGCCCATTTGGTGCTGTAACTAGCAGGAGTC
TTGTCATTAGTAAAAAGAAAAAGGGGTTGTTGCTGCTGCTGTTGTTGTTG
CTGCTGCTGCTGCTGTTGTGGAAACTGCAATTGTGGTTGCTGTT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR024882NUP58/p45/49
Vocabulary: Biological Process
TermDefinition
GO:0006913nucleocytoplasmic transport
Vocabulary: Cellular Component
TermDefinition
GO:0005643nuclear pore