g.arboreum_cottongen_reftransV1_0010677, g.arboreum_cottongen_reftransV1_0010677 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0010677
Unique Nameg.arboreum_cottongen_reftransV1_0010677
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1094
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr6chromosomeg.arboreum_cottongen_reftransV1_0010677:1..1094 .
Chr6:18322529..18324905 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0010677 vs. ExPASy TrEMBL
Match: V4UI80_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025487mg PE=4 SV=1)

HSP 1 Score: 482.256 bits (1240), Expect = 1.006e-164
Identity = 235/287 (81.88%), Postives = 256/287 (89.20%), Query Frame = -3
Query:  151 TNDKTPASYSTKWADLHPDSQKFLLQIEERILEYRDESQRLDQCTRLYDSSVSNEGFELDASHIVQELGGISTAMERQKALLQELMSTVKDMLRNTEVAVRSFMMLRPRFVHSNTGGASNATAPSQVPGATTTPGSGVQPTAASMVPVFDFYHGLPKKPSPFLQYTVARFEKYLGECRQWIXXXXXXXXLNSDRNSINHASSLLQSLPKVMSNVHDFFVHVAAKVESIHQYIESMKTAYLADHRHRGDVNDPFLEADRRETAKQEAAAKRVHPTLHLPANSQPPTQV 1011
            TND+ PA+YSTKWADLHPDSQK LLQIEER+LEYRDESQRLDQC+RLYDSSVSNEGFELDASHIVQELGGIST+MERQKA LQE M+ VKDMLRNTE+AVRSFMMLRPRF+H N G AS+ATAPSQ  GAT  P S  QP ++S+VPVFDFY GLPKKPS FLQ TVARFEKYLGE RQWIEELEQL+LL+ DRNS +H SSLLQSLP+V+SNVH FFVHVAAK ESIHQY+E+MKTAYLAD R RGD +DPFLEADRRETA+QEAAAKRVHPTLHLP NSQP  QV
Sbjct:   66 TNDRAPANYSTKWADLHPDSQKILLQIEERVLEYRDESQRLDQCSRLYDSSVSNEGFELDASHIVQELGGISTSMERQKAQLQERMAVVKDMLRNTEIAVRSFMMLRPRFLHPNAGSASSATAPSQASGATAAPSSTGQPASSSVVPVFDFYRGLPKKPSAFLQQTVARFEKYLGEFRQWIEELEQLILLDPDRNSSSHGSSLLQSLPQVISNVHIFFVHVAAKAESIHQYVETMKTAYLADQRRRGDGSDPFLEADRRETARQEAAAKRVHPTLHLPVNSQPSAQV 352          
BLAST of g.arboreum_cottongen_reftransV1_0010677 vs. ExPASy TrEMBL
Match: A0A0B2SCN8_GLYSO (Peroxidase A OS=Glycine soja GN=glysoja_003789 PE=4 SV=1)

HSP 1 Score: 477.248 bits (1227), Expect = 6.260e-164
Identity = 237/279 (84.95%), Postives = 255/279 (91.40%), Query Frame = -3
Query:  151 YSTKWADLHPDSQKFLLQIEERILEYRDESQRLDQCTRLYDSSVSNEGFELDASHIVQELGGISTAMERQKALLQELMSTVKDMLRNTEVAVRSFMMLRPRFVHSNTGGASNATAPSQVPGATTTPGSGVQPTAASMVPVFDFYHGLPKKPSPFLQYTVARFEKYLGECRQWIXXXXXXXXLNSDRNSINHASSLLQSLPKVMSNVHDFFVHVAAKVESIHQYIESMKTAYLADHRHRGDVNDPFLEADRRETAKQEAAAKRVHPTLHLPANSQPPTQV 987
            YST WADLHPDSQK LLQIEERILE+RDESQRLDQC+RLYDSSVSN+GFELDA HIVQELGGI+TAMERQK LL ELMSTVKDMLRNTEVAVRSFMMLRPRF+H  +GG S+ATAPSQ PGAT  P S  QPT AS+VPVFDFY GLP+KPSPFLQ TV RFEKYLGEC QWIEELEQLLLL S+RN+ ++ SSLLQSLPKVM+NVHDFFVHVAAKVESIHQYIESMK+AYLAD RHRG+VNDPFLEADRRETA+QEAA+KRVHPTLHLPANSQP TQV
Sbjct:    3 YSTNWADLHPDSQKILLQIEERILEFRDESQRLDQCSRLYDSSVSNDGFELDAGHIVQELGGINTAMERQKTLLHELMSTVKDMLRNTEVAVRSFMMLRPRFLHP-SGGTSSATAPSQTPGATIAPSSSSQPTTASIVPVFDFYSGLPRKPSPFLQQTVLRFEKYLGECHQWIEELEQLLLLESERNASSNGSSLLQSLPKVMTNVHDFFVHVAAKVESIHQYIESMKSAYLADQRHRGEVNDPFLEADRRETARQEAASKRVHPTLHLPANSQPSTQV 280          
BLAST of g.arboreum_cottongen_reftransV1_0010677 vs. ExPASy TrEMBL
Match: V7CF82_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G022500g PE=4 SV=1)

HSP 1 Score: 473.011 bits (1216), Expect = 2.515e-161
Identity = 239/287 (83.28%), Postives = 259/287 (90.24%), Query Frame = -3
Query:  151 TNDKTPASYSTKWADLHPDSQKFLLQIEERILEYRDESQRLDQCTRLYDSSVSNEGFELDASHIVQELGGISTAMERQKALLQELMSTVKDMLRNTEVAVRSFMMLRPRFVHSNTGGASNATAPSQVPGATTTPGSGVQPTAASMVPVFDFYHGLPKKPSPFLQYTVARFEKYLGECRQWIXXXXXXXXLNSDRNSINHASSLLQSLPKVMSNVHDFFVHVAAKVESIHQYIESMKTAYLADHRHRGDVNDPFLEADRRETAKQEAAAKRVHPTLHLPANSQPPTQV 1011
            TND+TPASYST WADLHPDSQK LLQIEERILEYRDESQRLDQC+RLYDSSVSN+GFELDA HIVQELGGIST MERQK LLQELMS VKDMLRNTEVAVRSFM+LRPRF H  +GG+S+ATAPSQ PG T  PGS  QP  AS+VPVFDFY GLPKKPSPFLQ T+ RFEKYLGEC QWIEELEQLLLL+S+RN+ ++ SS LQSLPKVM+NVHDFFVHVAAKVESIHQYIESMK++YLAD R RG+VNDPFLEADRRETA+QEAA+KRVHPTLHLPAN QP TQV
Sbjct:   59 TNDRTPASYSTNWADLHPDSQKILLQIEERILEYRDESQRLDQCSRLYDSSVSNDGFELDAGHIVQELGGISTGMERQKTLLQELMSNVKDMLRNTEVAVRSFMILRPRF-HHPSGGSSSATAPSQTPGVTMAPGSSGQPINASIVPVFDFYSGLPKKPSPFLQQTILRFEKYLGECHQWIEELEQLLLLDSERNASSNGSSSLQSLPKVMTNVHDFFVHVAAKVESIHQYIESMKSSYLADQRRRGEVNDPFLEADRRETARQEAASKRVHPTLHLPANPQPSTQV 344          
BLAST of g.arboreum_cottongen_reftransV1_0010677 vs. ExPASy TrEMBL
Match: M5VPM8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004547mg PE=4 SV=1)

HSP 1 Score: 471.855 bits (1213), Expect = 1.978e-160
Identity = 235/287 (81.88%), Postives = 254/287 (88.50%), Query Frame = -3
Query:  151 TNDKTPASYSTKWADLHPDSQKFLLQIEERILEYRDESQRLDQCTRLYDSSVSNEGFELDASHIVQELGGISTAMERQKALLQELMSTVKDMLRNTEVAVRSFMMLRPRFVHSNTGGASNATAPSQVPGATTTPGSGVQPTAASMVPVFDFYHGLPKKPSPFLQYTVARFEKYLGECRQWIXXXXXXXXLNSDRNSINHASSLLQSLPKVMSNVHDFFVHVAAKVESIHQYIESMKTAYLADHRHRGDVNDPFLEADRRETAKQEAAAKRVHPTLHLPANSQPPTQV 1011
            TNDK PASYSTKWADLHPDSQK LLQIEERIL +RDESQRLDQC+RLYDSSVSN+ FE DAS I+QELGGI TAM+RQKALL ELM+ VKDMLRN+EV+VR+FM+LRPRF+H NTGG SNA APSQ  GAT  PGS  QPTA S+VPVFDFY+GLP+KPSPFLQ T+ARFEKYL ECRQWIEELEQLLL  S+RNS N  SSLLQSLPKVMSNVHDFFVHVAAKVESIHQYI SMK+AYLA+ R  GD NDPFLEADRRETA+QEAAAKRVHPTLHLPA SQP TQV
Sbjct:   77 TNDKAPASYSTKWADLHPDSQKILLQIEERILGHRDESQRLDQCSRLYDSSVSNDTFEHDASRILQELGGIGTAMDRQKALLHELMAIVKDMLRNSEVSVRTFMILRPRFLHPNTGGTSNAIAPSQASGATVPPGSSSQPTATSIVPVFDFYNGLPRKPSPFLQQTIARFEKYLVECRQWIEELEQLLLA-SERNSANDGSSLLQSLPKVMSNVHDFFVHVAAKVESIHQYIVSMKSAYLANQRRLGDGNDPFLEADRRETARQEAAAKRVHPTLHLPATSQPSTQV 362          
BLAST of g.arboreum_cottongen_reftransV1_0010677 vs. ExPASy TrEMBL
Match: B9HEE7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s11760g PE=4 SV=2)

HSP 1 Score: 464.922 bits (1195), Expect = 1.247e-157
Identity = 244/287 (85.02%), Postives = 259/287 (90.24%), Query Frame = -3
Query:  154 TNDKTPASYSTKWADLHPDSQKFLLQIEERILEYRDESQRLDQCTRLYDSSVSNEGFELDASHIVQELGGISTAMERQKALLQELMSTVKDMLRNTEVAVRSFMMLRPRFVHSNTGG-ASNATAPSQVPGATTTPGSGVQPTAASMVPVFDFYHGLPKKPSPFLQYTVARFEKYLGECRQWIXXXXXXXXLNSDRNSINHASSLLQSLPKVMSNVHDFFVHVAAKVESIHQYIESMKTAYLADHRHRGDVNDPFLEADRRETAKQEAAAKRVHPTLHLPANSQPPTQ 1011
            TNDK PASYSTKW DLHPDSQK LLQIEERILEYRDES+RLDQC+RLYDSSVSNEGFELDAS I+QELGGIST+MERQKALLQELM+ VKDMLRNTE+AVRSFMML PRF+HSN GG ASNATAPSQ PG T  PGS  QP ++S+VPVFDFY GLPKKPSPFLQ TVARFEKYLGEC QWIEELEQLLLL+S+RNS +  SSLLQSLPKVMSNVHDFFVHVAAKVESIHQYIESMKTAYL D R RGD NDPFLEADRRE A++EAAAKR HPTLHLPANSQP TQ
Sbjct:   88 TNDKAPASYSTKWEDLHPDSQKTLLQIEERILEYRDESKRLDQCSRLYDSSVSNEGFELDASQIIQELGGISTSMERQKALLQELMTNVKDMLRNTEMAVRSFMMLHPRFLHSNAGGGASNATAPSQPPGTTGIPGSTSQPASSSIVPVFDFYSGLPKKPSPFLQQTVARFEKYLGECSQWIEELEQLLLLDSERNSSHPGSSLLQSLPKVMSNVHDFFVHVAAKVESIHQYIESMKTAYLVDQRRRGDGNDPFLEADRRERARKEAAAKRAHPTLHLPANSQPSTQ 374          
BLAST of g.arboreum_cottongen_reftransV1_0010677 vs. ExPASy TrEMBL
Match: A0A0A0KI61_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G490040 PE=4 SV=1)

HSP 1 Score: 460.299 bits (1183), Expect = 6.442e-156
Identity = 226/287 (78.75%), Postives = 253/287 (88.15%), Query Frame = -3
Query:  151 TNDKTPASYSTKWADLHPDSQKFLLQIEERILEYRDESQRLDQCTRLYDSSVSNEGFELDASHIVQELGGISTAMERQKALLQELMSTVKDMLRNTEVAVRSFMMLRPRFVHSNTGGASNATAPSQVPGATTTPGSGVQPTAASMVPVFDFYHGLPKKPSPFLQYTVARFEKYLGECRQWIXXXXXXXXLNSDRNSINHASSLLQSLPKVMSNVHDFFVHVAAKVESIHQYIESMKTAYLADHRHRGDVNDPFLEADRRETAKQEAAAKRVHPTLHLPANSQPPTQV 1011
            TNDK PASY TKWADLHPDSQK LLQIEERILEYRDESQRLDQC+RLYDSSVSN+GFE DAS IVQELGGIS + E QK +LQELM+  K+ML NTEVA+RSFMM+RPRF+H + GGASN TAPSQVPGATT  GS  QPT+ S+ PVFDFY GLP+KPSPFLQ TV+RFEKYL ECRQWIE+LEQLL+L+S+R++ N +SSL QSLPK+MSNVH+FFVHVA+KVESIHQYIESMK+AYLAD R RGD N+PFLEADRRETA+QEAAAKR HPTLHLP NSQP TQ 
Sbjct:   79 TNDKAPASYGTKWADLHPDSQKILLQIEERILEYRDESQRLDQCSRLYDSSVSNDGFEFDASRIVQELGGISASTEHQKVMLQELMAAAKEMLWNTEVAIRSFMMIRPRFLHQSAGGASNPTAPSQVPGATTPLGSSGQPTSTSIAPVFDFYSGLPRKPSPFLQQTVSRFEKYLAECRQWIEDLEQLLVLDSNRSASNSSSSLFQSLPKIMSNVHEFFVHVASKVESIHQYIESMKSAYLADQRRRGDGNNPFLEADRRETARQEAAAKRAHPTLHLPTNSQPSTQA 365          
BLAST of g.arboreum_cottongen_reftransV1_0010677 vs. ExPASy TrEMBL
Match: M1AMQ0_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400010074 PE=4 SV=1)

HSP 1 Score: 451.44 bits (1160), Expect = 5.088e-152
Identity = 229/287 (79.79%), Postives = 248/287 (86.41%), Query Frame = -3
Query:  151 TNDKTPASYSTKWADLHPDSQKFLLQIEERILEYRDESQRLDQCTRLYDSSVSNEGFELDASHIVQELGGISTAMERQKALLQELMSTVKDMLRNTEVAVRSFMMLRPRFVHSNTGGASNATAPSQVPGATTTPGSGVQPTAASMVPVFDFYHGLPKKPSPFLQYTVARFEKYLGECRQWIXXXXXXXXLNSDRNSINHASSLLQSLPKVMSNVHDFFVHVAAKVESIHQYIESMKTAYLADHRHRGDVNDPFLEADRRETAKQEAAAKRVHPTLHLPANSQPPTQV 1011
            TNDKTPA+YSTKWADLHPDSQK LLQIEERILEYRDESQRLDQC+RLYDSSVSN+GFELDAS  +QELGGIST+MERQKA+LQELM  VKDMLRNTEV VRSFMMLRPRF H +   A++ TAPSQ  GAT  P +     +     +FDFY G+PKKPSPFLQ TVARFEKYL ECRQW+EELEQL+ L+SDRNS+N +SSLLQSLPKVMSNVH FFVHVAAKVESIHQYIESMKTAYLAD R RGD +DPFLEADRRETAKQEAAAKRVHPTLHLP  SQP TQV
Sbjct:  119 TNDKTPATYSTKWADLHPDSQKLLLQIEERILEYRDESQRLDQCSRLYDSSVSNDGFELDASRSIQELGGISTSMERQKAILQELMIVVKDMLRNTEVGVRSFMMLRPRFHHQSAPAAASVTAPSQASGATVAPTASGSAQSTPNAAIFDFYSGIPKKPSPFLQQTVARFEKYLVECRQWVEELEQLMALDSDRNSMNSSSSLLQSLPKVMSNVHGFFVHVAAKVESIHQYIESMKTAYLADQRRRGDGSDPFLEADRRETAKQEAAAKRVHPTLHLPTISQPSTQV 405          
BLAST of g.arboreum_cottongen_reftransV1_0010677 vs. ExPASy TrEMBL
Match: B9S8N7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0603150 PE=4 SV=1)

HSP 1 Score: 446.432 bits (1147), Expect = 7.951e-152
Identity = 237/287 (82.58%), Postives = 254/287 (88.50%), Query Frame = -3
Query:  151 TNDKTPASYSTKWADLHPDSQKFLLQIEERILEYRDESQRLDQCTRLYDSSVSNEGFELDASHIVQELGGISTAMERQKALLQELMSTVKDMLRNTEVAVRSFMMLRPRFVHSNTGGASNATAPSQVPGATTTPGSGVQPTAASMVPVFDFYHGLPKKPSPFLQYTVARFEKYLGECRQWIXXXXXXXXLNSDRNSINHASSLLQSLPKVMSNVHDFFVHVAAKVESIHQYIESMKTAYLADHRHRGDVNDPFLEADRRETAKQEAAAKRVHPTLHLPANSQPPTQV 1011
            TNDK PASYSTKWADLHPDSQKFLLQIEERILEYRDESQRLDQC+RLYDS+ S EGFELDA HI+QELGGIST+MERQK LLQELM  VKDMLRNTE+A+RSFMMLRPRF   N GGASNA APSQ  GA    GS  Q  +AS++PVFDFY GLPKKPSPFLQ TVARFEKYLGECRQWIEELEQLLLL+SDRNS +  +SLLQSLPKVM N+HDFFVHV +KVESIHQYIESM+TAYLAD R RG++NDPFLEADRRETAKQEAAAKRVHPTLHLP NSQP TQV
Sbjct:   68 TNDKAPASYSTKWADLHPDSQKFLLQIEERILEYRDESQRLDQCSRLYDSAFSYEGFELDAGHIIQELGGISTSMERQKTLLQELMVNVKDMLRNTEMAIRSFMMLRPRFFRPNAGGASNAAAPSQPSGAAAAAGSTGQTASASILPVFDFYSGLPKKPSPFLQQTVARFEKYLGECRQWIEELEQLLLLDSDRNSSHPGTSLLQSLPKVMENLHDFFVHVTSKVESIHQYIESMRTAYLADQRRRGELNDPFLEADRRETAKQEAAAKRVHPTLHLPPNSQPSTQV 354          
BLAST of g.arboreum_cottongen_reftransV1_0010677 vs. ExPASy TrEMBL
Match: K4BCH4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc02g090230.2 PE=4 SV=1)

HSP 1 Score: 449.899 bits (1156), Expect = 2.560e-151
Identity = 227/287 (79.09%), Postives = 247/287 (86.06%), Query Frame = -3
Query:  151 TNDKTPASYSTKWADLHPDSQKFLLQIEERILEYRDESQRLDQCTRLYDSSVSNEGFELDASHIVQELGGISTAMERQKALLQELMSTVKDMLRNTEVAVRSFMMLRPRFVHSNTGGASNATAPSQVPGATTTPGSGVQPTAASMVPVFDFYHGLPKKPSPFLQYTVARFEKYLGECRQWIXXXXXXXXLNSDRNSINHASSLLQSLPKVMSNVHDFFVHVAAKVESIHQYIESMKTAYLADHRHRGDVNDPFLEADRRETAKQEAAAKRVHPTLHLPANSQPPTQV 1011
            TNDKTPA+YSTKW DLHPDSQK LLQIEERILEYRDESQRLDQC+RLYDSSVSN+GFELDAS  +QELGGIST+MERQKA+LQELM  VKDMLRNTEVAVRSFMMLRP+F+H +    ++ATAPSQ  GAT  P +     +     +FDFY G+PKKPSPFLQ TVARFEKYL ECRQW+EELEQL+ L+SDRNS+N  SSLLQSLP VMSNVH FFVHVAAKVESIHQYIESMKTAYLAD R RGD +DPFLEADRRETAKQEAAAKRVHPTLHLP  SQP TQV
Sbjct:  121 TNDKTPATYSTKWTDLHPDSQKLLLQIEERILEYRDESQRLDQCSRLYDSSVSNDGFELDASRSIQELGGISTSMERQKAILQELMIVVKDMLRNTEVAVRSFMMLRPKFLHQSAPATASATAPSQASGATVAPTASGSAQSTPNAAIFDFYSGIPKKPSPFLQQTVARFEKYLVECRQWVEELEQLMALDSDRNSMNSNSSLLQSLPNVMSNVHGFFVHVAAKVESIHQYIESMKTAYLADQRRRGDGSDPFLEADRRETAKQEAAAKRVHPTLHLPTISQPSTQV 407          
BLAST of g.arboreum_cottongen_reftransV1_0010677 vs. ExPASy TrEMBL
Match: A0A022RZD4_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a004636mg PE=4 SV=1)

HSP 1 Score: 441.425 bits (1134), Expect = 3.028e-148
Identity = 229/287 (79.79%), Postives = 250/287 (87.11%), Query Frame = -3
Query:  151 TNDKTPASYSTKWADLHPDSQKFLLQIEERILEYRDESQRLDQCTRLYDSSVSNEGFELDASHIVQELGGISTAMERQKALLQELMSTVKDMLRNTEVAVRSFMMLRPRFVHSNTGGASNATAPSQVPGATTTPGSGVQPTAASMVPVFDFYHGLPKKPSPFLQYTVARFEKYLGECRQWIXXXXXXXXLNSDRNSINHASSLLQSLPKVMSNVHDFFVHVAAKVESIHQYIESMKTAYLADHRHRGDVNDPFLEADRRETAKQEAAAKRVHPTLHLPANSQPPTQV 1011
            TNDK PA+YSTKWADLHPDSQK LLQIE++ILEYRDESQRLDQC RLYDSSVSN GFELDAS+IVQELGGIS +MERQKA LQELM+ VK+MLRNTEVAVRSFMMLRPRFVH N   A  A AP Q  GATTT  S  QP A SMVPV DFY GLPKKPSPF+Q TVARFEKYL ECRQWI+ELEQLLLL+S++NS N +SSLLQSLPKVM+NV+DFFVHVA+KVESIHQYIESMKTAYLAD R RGD N+PFLEADRRETAKQEAAA+R+HPTL+LPA+S    Q 
Sbjct:   67 TNDKVPATYSTKWADLHPDSQKVLLQIEDKILEYRDESQRLDQCDRLYDSSVSNNGFELDASYIVQELGGISISMERQKATLQELMTVVKEMLRNTEVAVRSFMMLRPRFVHENKSAAGGAAAPPQPLGATTTQTSSGQPAANSMVPVLDFYSGLPKKPSPFMQQTVARFEKYLSECRQWIDELEQLLLLDSEKNSFNSSSSLLQSLPKVMANVNDFFVHVASKVESIHQYIESMKTAYLADQRRRGDGNNPFLEADRRETAKQEAAARRIHPTLYLPASSHSTAQT 353          
BLAST of g.arboreum_cottongen_reftransV1_0010677 vs. ExPASy Swiss-Prot
Match: NUP58_ARATH (Nuclear pore complex protein NUP58 OS=Arabidopsis thaliana GN=NUP58 PE=1 SV=1)

HSP 1 Score: 411.379 bits (1056), Expect = 1.492e-138
Identity = 215/293 (73.38%), Postives = 239/293 (81.57%), Query Frame = -3
Query:  151 TNDKTPASYSTKWADLHPDSQKFLLQIEERILEYRDESQRLDQCTRLYDSSVSNEGFELDASHIVQELGGISTAMERQKALLQELMSTVKDMLRNTEVAVRSFMMLRPRFVHSNTGGA--SNATAPSQVPGATTTPG-SGVQPTAASMVPVFDFYHGLPKKPSPFLQYTVARFEKYLGECRQWIXXXXXXXXLNSDRNSINHASSLLQSLPKVMSNVHDFFVHVAAKVESIHQYIESMKTAYLADHRHRGDVNDPFLEADRRETAKQEAAAKRVHPTLHLPA---NSQPPTQV 1011
            TNDK PA+YSTKWADLHPDSQK LLQIEE+ILE+R ESQRLDQC+RLYDSSVS+EGFE DAS IVQELGGI+TAM+RQKA+L ELM   KDMLRN E+AVRSFMML+PRF H   GG   S  + PSQ  G    P  SG Q    + V V DFY G+PKKP+ FL  TV RFEKYL ECRQW+EELEQLL L+SD+ S  HA SLL+SLPKVMSNVHDFFVHVAAKVESIHQYIESM+T+YLAD R RG+ +DPFLEADRRETAKQEAAAKRVHPTLHLPA   ++QP TQV
Sbjct:   97 TNDKAPANYSTKWADLHPDSQKLLLQIEEKILEHRSESQRLDQCSRLYDSSVSSEGFEFDASRIVQELGGINTAMDRQKAVLHELMIVAKDMLRNAEIAVRSFMMLQPRFPHWKQGGGVVSVGSQPSQGQGTNPAPASSGQQQAVTTTVQVSDFYRGIPKKPTAFLLQTVVRFEKYLNECRQWVEELEQLLALDSDKYS-RHA-SLLESLPKVMSNVHDFFVHVAAKVESIHQYIESMRTSYLADQRRRGECHDPFLEADRRETAKQEAAAKRVHPTLHLPASTTSTQPSTQV 387          
BLAST of g.arboreum_cottongen_reftransV1_0010677 vs. ExPASy Swiss-Prot
Match: PERA_ALOVR (Peroxidase A (Fragments) OS=Aloe vera PE=1 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 6.282e-9
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = -3
Query:  289 KVMSNVHDFFVHVAAKVESIHQYIESMKTAYLA 387
            +VMSNVHDFFVHVAAKVESIHQYIESM+   L+
Sbjct:   79 RVMSNVHDFFVHVAAKVESIHQYIESMRYGSLS 111          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0010677 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
V4UI80_9ROSI1.006e-16481.88Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A0B2SCN8_GLYSO6.260e-16484.95Peroxidase A OS=Glycine soja GN=glysoja_003789 PE=... [more]
V7CF82_PHAVU2.515e-16183.28Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
M5VPM8_PRUPE1.978e-16081.88Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
B9HEE7_POPTR1.247e-15785.02Uncharacterized protein OS=Populus trichocarpa GN=... [more]
A0A0A0KI61_CUCSA6.442e-15678.75Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
M1AMQ0_SOLTU5.088e-15279.79Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
B9S8N7_RICCO7.951e-15282.58Putative uncharacterized protein OS=Ricinus commun... [more]
K4BCH4_SOLLC2.560e-15179.09Uncharacterized protein OS=Solanum lycopersicum GN... [more]
A0A022RZD4_ERYGU3.028e-14879.79Uncharacterized protein OS=Erythranthe guttata GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0010677 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NUP58_ARATH1.492e-13873.38Nuclear pore complex protein NUP58 OS=Arabidopsis ... [more]
PERA_ALOVR6.282e-981.82Peroxidase A (Fragments) OS=Aloe vera PE=1 SV=1[more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 98..118
NoneNo IPR availablePFAMPF15967Nucleoporin_FG2coord: 182..292
e-value: 3.3E-8
score: 32.4
IPR024882Nucleoporin p58/p45PANTHERPTHR13437NUCLEOPORIN P58/P45 NUCLEOPORIN-LIKE PROTEIN 1coord: 1..132
coord: 172..358

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0010677 ID=g.arboreum_cottongen_reftransV1_0010677; Name=g.arboreum_cottongen_reftransV1_0010677; organism=Gossypium arboreum; type=contig; length=1094bp
AAACAGAGAAGATGACATGGAAGAAGCAGGAGTAGAGGACGGTGTACTAA
AAAGAGACAATCCACCTCCCGAGGAAGCTGCTGATGTTGCTGCAGAAGTC
TGTGGGGCAGAGGCTGCAGCAGGAGCTGCTGAGCTGGCAAACAAGCCAGC
AACTTGAGTTGGCGGTTGTGAATTTGCAGGTAAATGCAAGGTTGGATGTA
CCCTCTTAGCAGCAGCTTCTTGTTTGGCAGTTTCTCTCCTATCAGCCTCA
AGAAAAGGATCATTAACATCTCCTCTGTGACGGTGATCAGCAAGATAAGC
TGTTTTCATTGATTCAATATATTGATGAATGCTTTCCACCTTGGCAGCCA
CATGAACAAAAAAGTCATGCACATTGGACATGACTTTTGGAAGAGATTGC
AATAAAGAGGATGCGTGATTGATAGAGTTTCTATCAGAATTCAAAAGGAG
AAGTTGTTCCAACTCTTCAATCCATTGGCGGCACTCACCCAAATACTTCT
CAAATCTAGCAACTGTATACTGTAGAAAGGGAGAAGGCTTCTTTGGAAGC
CCATGGTAAAAATCAAAAACTGGTACCATGGATGCAGCAGTTGGTTGAAC
CCCAGAACCTGGTGTTGTTGTTGCCCCTGGAACCTGGGATGGTGCAGTGG
CATTTGAAGCACCTCCTGTGTTTGAATGAACAAACCGTGGCCGAAGCATC
ATGAAAGAACGAACAGCAACCTCTGTGTTCCTTAACATATCTTTCACAGT
ACTCATCAATTCCTGCAGCAAAGCTTTCTGCCTCTCCATGGCAGTACTGA
TTCCTCCAAGTTCCTGAACAATGTGGCTGGCATCAAGCTCGAAGCCTTCA
TTGGACACCGAAGAATCATAAAGGCGAGTACACTGGTCTAACCTTTGGCT
TTCATCCCTATACTCCAATATCCTTTCCTCAATTTGAAGCAGAAATTTTT
GAGAATCAGGATGGAGATCAGCCCATTTGGTGCTGTAACTAGCAGGAGTC
TTGTCATTAGTAAAAAGAAAAAGGGGTTGTTGCTGCTGCTGTTGTTGTTG
CTGCTGCTGCTGCTGTTGTGGAAACTGCAATTGTGGTTGCTGTT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR024882NUP58/p45/49
Vocabulary: Biological Process
TermDefinition
GO:0006913nucleocytoplasmic transport
Vocabulary: Cellular Component
TermDefinition
GO:0005643nuclear pore