g.arboreum_cottongen_reftransV1_0012411, g.arboreum_cottongen_reftransV1_0012411 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0012411
Unique Name	g.arboreum_cottongen_reftransV1_0012411
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	647

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr5	chromosome	g.arboreum_cottongen_reftransV1_0012411:1..647 . Chr5:48827198..48828920 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

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BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy TrEMBL
Match: A0A0B0MEB5_GOSAR (Amidase 1-like protein OS=Gossypium arboreum GN=F383_18931 PE=4 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 5.052e-74
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1

Query:    1 EQVSIASNSAPLPDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRKLVS 414
            EQVSIASNSAPLPDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLNGTNATYYNNRAAAYLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRKLVS
Sbjct:  498 EQVSIASNSAPLPDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLNGTNATYYNNRAAAYLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRKLVS 635

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BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy TrEMBL
Match: A0A0D2PXP7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G221100 PE=4 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 5.929e-73
Identity = 135/138 (97.83%), Postives = 137/138 (99.28%), Query Frame = 1

Query:    1 EQVSIASNSAPLPDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRKLVS 414
            EQVS+ASNSAPLPDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLNGTNATYYNNRAAAYLELGCFQQAEEDCNKAIS DKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAE+RLRKLVS
Sbjct:  445 EQVSMASNSAPLPDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLNGTNATYYNNRAAAYLELGCFQQAEEDCNKAISLDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAERRLRKLVS 582

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BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy TrEMBL
Match: A0A0D2NGY2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G221100 PE=4 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.282e-72
Identity = 135/138 (97.83%), Postives = 137/138 (99.28%), Query Frame = 1

Query:    1 EQVSIASNSAPLPDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRKLVS 414
            EQVS+ASNSAPLPDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLNGTNATYYNNRAAAYLELGCFQQAEEDCNKAIS DKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAE+RLRKLVS
Sbjct:  466 EQVSMASNSAPLPDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLNGTNATYYNNRAAAYLELGCFQQAEEDCNKAISLDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAERRLRKLVS 603

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BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy TrEMBL
Match: A0A061E2D6_THECC (Translocon at the outer membrane of chloroplasts 64-V isoform 1 OS=Theobroma cacao GN=TCM_007478 PE=4 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 1.007e-66
Identity = 125/137 (91.24%), Postives = 133/137 (97.08%), Query Frame = 1

Query:    1 EQVSIASNSAPLPDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRKLV 411
            +QVSIASN APLPD+NGNMDASELLKEKGNAAFKG QWNKAV+YY++AIKLNGT ATYYNNRAAAYLELGCFQQAEEDC+KAIS DKKNVKAYLRRGTAR+SLLCYKEALEDFKHALVLEPQNKVANLAEKRLRKL+
Sbjct:  469 DQVSIASNLAPLPDVNGNMDASELLKEKGNAAFKGMQWNKAVSYYSKAIKLNGTTATYYNNRAAAYLELGCFQQAEEDCSKAISLDKKNVKAYLRRGTARESLLCYKEALEDFKHALVLEPQNKVANLAEKRLRKLI 605

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BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy TrEMBL
Match: A0A067KXG8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24900 PE=4 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 7.686e-66
Identity = 121/138 (87.68%), Postives = 131/138 (94.93%), Query Frame = 1

Query:    1 EQVSIASNSAPLPDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRKLVS 414
            EQV I SNSAP+PD+NGN+DASELLKEKGNAAFKGKQWNKAVNYYTEAIKLN  NATYY+NRAAA+LELGCFQQAEEDC+KAIS DKKNVKAYLRRGTAR+SLL YKEA +DFKHALVLEPQNKVA+LAEKRLRKL+S
Sbjct:  468 EQVGIVSNSAPIPDINGNIDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLNELNATYYSNRAAAFLELGCFQQAEEDCSKAISLDKKNVKAYLRRGTARESLLFYKEAAQDFKHALVLEPQNKVASLAEKRLRKLMS 605

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BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy TrEMBL
Match: D7TR56_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g00300 PE=4 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 1.697e-64
Identity = 122/138 (88.41%), Postives = 128/138 (92.75%), Query Frame = 1

Query:    1 EQVSIASNSAPLPDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRKLVS 414
            EQ SI SNS PLPD NG+MDASELLKEKGNAAFKG+QWNKAVNYYTEAIKLN TNATYY NRAAAYLELGCFQQA EDC+KAI  DKKNVKAYLRRGTAR+SLLCYKEA +DFKHALVLEPQNKVANLAEKRLRKL+S
Sbjct:  470 EQASITSNSLPLPDTNGDMDASELLKEKGNAAFKGRQWNKAVNYYTEAIKLNETNATYYCNRAAAYLELGCFQQAVEDCSKAILLDKKNVKAYLRRGTARESLLCYKEAAQDFKHALVLEPQNKVANLAEKRLRKLMS 607

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BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy TrEMBL
Match: M5VMQ8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003071mg PE=4 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.168e-63
Identity = 118/138 (85.51%), Postives = 130/138 (94.20%), Query Frame = 1

Query:    1 EQVSIASNSAPLPDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRKLVS 414
            E+VSIAS+S+PLPD N N+D SELLKEKGNAAFKGKQWNKAV YYTEAIKLN T+ATYY NRAAAYLELGCFQQAEEDC+KAIS DKKNVKAY+RRGTAR+SLLCYK+A +DFKHALVLEPQNKVANLAEKRLR+L+S
Sbjct:  470 EKVSIASHSSPLPDTNDNLDVSELLKEKGNAAFKGKQWNKAVKYYTEAIKLNMTSATYYCNRAAAYLELGCFQQAEEDCSKAISLDKKNVKAYMRRGTARESLLCYKDAAQDFKHALVLEPQNKVANLAEKRLRELMS 607

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BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy TrEMBL
Match: A0A068TQ00_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_1 OS=Coffea canephora GN=GSCOC_T00014789001 PE=4 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 9.619e-63
Identity = 115/138 (83.33%), Postives = 124/138 (89.86%), Query Frame = 1

Query:    1 EQVSIASNSAPLPDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRKLVS 414
            ++VS  SNS PLPD+NGNM+ SELLKEKGNAA+KGKQWNKAV+YYTEAI LN   ATYY NRAAA+LELGCFQQAEEDC  AIS DKKNVKAYLRRGTAR+SLLCYKEAL DFKHALVLEPQNK ANLAEKRLRKL+S
Sbjct:  464 DEVSTVSNSPPLPDINGNMETSELLKEKGNAAYKGKQWNKAVSYYTEAIGLNDKIATYYCNRAAAFLELGCFQQAEEDCTSAISLDKKNVKAYLRRGTARESLLCYKEALLDFKHALVLEPQNKAANLAEKRLRKLIS 601

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BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy TrEMBL
Match: A0A0A0K408_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G062900 PE=4 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 4.958e-58
Identity = 116/139 (83.45%), Postives = 128/139 (92.09%), Query Frame = 1

Query:    1 EQVSIASNSA-PLPDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRKLVS 414
            EQV +ASN+  P  D NG+MDASELLKEKGNAAFKG+QWNKAVNYYT+AIKLNGTNATYY NRAAAYLELGCFQQAE+DC+KAI  DKK VKAYLRRGTAR+SLL YKEA++DFKHALVLEPQNKVANLAEKRL+KL+S
Sbjct:  468 EQVGVASNNLLPFADTNGDMDASELLKEKGNAAFKGRQWNKAVNYYTDAIKLNGTNATYYCNRAAAYLELGCFQQAEDDCSKAILLDKKTVKAYLRRGTARESLLLYKEAIKDFKHALVLEPQNKVANLAEKRLQKLIS 606

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BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy TrEMBL
Match: K4CZZ3_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc10g047300.1 PE=4 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 8.710e-57
Identity = 103/137 (75.18%), Postives = 119/137 (86.86%), Query Frame = 1

Query:    4 QVSIASNSAPLPDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRKLVS 414
            +VSI S+++PLPD NG++DASELLKEKGNAA+KGKQWNKAV+YYTEAIKLN     Y N  AA  LELGCF QAEEDC KAIS DKKNVKAY+RRGTAR+SLL YKEAL+D +HALVLEPQNK A+++EKRLRKL+S
Sbjct:  463 EVSIQSSASPLPDTNGSIDASELLKEKGNAAYKGKQWNKAVSYYTEAIKLNDNATYYSNRAAAY-LELGCFHQAEEDCTKAISLDKKNVKAYMRRGTARESLLFYKEALQDIRHALVLEPQNKYASVSEKRLRKLIS 598

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BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy Swiss-Prot
Match: OE64M_ARATH (Outer envelope protein 64, mitochondrial OS=Arabidopsis thaliana GN=OM64 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.521e-54
Identity = 104/137 (75.91%), Postives = 120/137 (87.59%), Query Frame = 1

Query:    1 EQVSIASNSAPLPDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRKLV 411
            +Q  +ASN AP+ D NGNM+ASE++KEKGNAA+KGKQWNKAVN+YTEAIKLNG NATYY NRAAA+LEL CFQQAE+DC KA+  DKKNVKAYLRRGTAR+SL+ YKEA  DF+HALVLEPQNK A +AEKRLRK +
Sbjct:  467 DQAKLASNLAPVSDTNGNMEASEVMKEKGNAAYKGKQWNKAVNFYTEAIKLNGANATYYCNRAAAFLELCCFQQAEQDCTKAMLIDKKNVKAYLRRGTARESLVRYKEAAADFRHALVLEPQNKTAKVAEKRLRKHI 603

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BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy Swiss-Prot
Match: TOC64_PEA (Translocon at the outer membrane of chloroplasts 64 OS=Pisum sativum GN=TOC64 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.894e-36
Identity = 86/136 (63.24%), Postives = 102/136 (75.00%), Query Frame = 1

Query:    1 EQVSIASNSAPLPDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRKL 408
            EQ  IA+ S     +     ++E+ KEKGN A+K KQW KA+ +YTEAIKL G NATYY+NRA AYLELG + QAEEDC  AISFDKKNVKAY RRGTAR+ L  YKEA++DFK+ALVLEP NK A  + +RLRKL
Sbjct:  456 EQADIAAPSKSSKSVVSKEQSAEISKEKGNQAYKDKQWQKAIGFYTEAIKLCGNNATYYSNRAQAYLELGSYLQAEEDCTTAISFDKKNVKAYFRRGTAREMLGYYKEAIDDFKYALVLEPTNKRAASSAERLRKL 591

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BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy Swiss-Prot
Match: OE64C_ARATH (Outer envelope protein 64, chloroplastic OS=Arabidopsis thaliana GN=OEP64 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.298e-33
Identity = 79/117 (67.52%), Postives = 95/117 (81.20%), Query Frame = 1

Query:   58 DASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRKL 408
            +++E+ KEKGN AFK K W KA+  Y+EAIKL+  NATYY+NRAAAYLELG F QAEEDC KAI+ DKKNVKAYLRRGTAR+ L   K A+EDF++ALVLEP NK A+L+ +RLRK 
Sbjct:  472 ESAEIAKEKGNQAFKEKLWQKAIGLYSEAIKLSDNNATYYSNRAAAYLELGGFLQAEEDCTKAITLDKKNVKAYLRRGTAREMLGDCKGAIEDFRYALVLEPNNKRASLSAERLRKF 588

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BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy Swiss-Prot
Match: TOM34_RAT (Mitochondrial import receptor subunit TOM34 OS=Rattus norvegicus GN=Tomm34 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.202e-11
Identity = 41/111 (36.94%), Postives = 67/111 (60.36%), Query Frame = 1

Query:   49 GNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVAN 381
            G+++ + +LKE+GN   K     KA+  Y+E++  +   +  Y+NRA  +L L  +++AE+DC +A+  D KNVKA+ RR  A  +L  YK +L D    L +EP+N  A+
Sbjct:  188 GDVERARVLKEEGNELVKKGNHKKAIEKYSESLLFSSLESATYSNRALCHLVLKQYKEAEKDCTEALKLDGKNVKAFYRRAQAYKALKDYKSSLADISSLLQIEPRNGPAH 298

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BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy Swiss-Prot
Match: RPAP3_MOUSE (RNA polymerase II-associated protein 3 OS=Mus musculus GN=Rpap3 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 3.124e-11
Identity = 47/110 (42.73%), Postives = 65/110 (59.09%), Query Frame = 1

Query:   76 KEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRK 405
            K+ GN  FK  ++ +A+  YT  I  + TNA    NRA AYL++  +++AE DC +AI  D    KA+ RRGTAR  L    EA +DF+  L+LEP NK A     R++K
Sbjct:  288 KDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAATELSRIKK 397

HSP 2 Score: 62.7734 bits (151), Expect = 3.554e-10
Identity = 42/100 (42.00%), Postives = 60/100 (60.00%), Query Frame = 1

Query:   70 LLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQN 369
            +LKEKGN  FK  ++++A+  YT+ +  +  N     NRA+AY  L  F  AE DCN AI+  +   KAY RRG AR +L   ++A +D++  L LEP N
Sbjct:  136 VLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDN 235

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BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy Swiss-Prot
Match: SGTB_HUMAN (Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Homo sapiens GN=SGTB PE=1 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 3.702e-11
Identity = 56/136 (41.18%), Postives = 85/136 (62.50%), Query Frame = 1

Query:   19 SNSAPLPDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKV--ANL--AEKRLRKLVS 414
            SNS P      ++  ++ LK++GN   K + +  AV+ YT+AI+L+  NA YY NRAAA  +LG +  A +DC KAI+ D K  KAY R G A  +L  ++EA+  ++ AL L+P+N    +NL  AE++LR++ S
Sbjct:   75 SNSVP-----EDVGKADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLGHYTDAIKDCEKAIAIDSKYSKAYGRMGLALTALNKFEEAVTSYQKALDLDPENDSYKSNLKIAEQKLREVSS 205

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BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy Swiss-Prot
Match: PPP5_MOUSE (Serine/threonine-protein phosphatase 5 OS=Mus musculus GN=Ppp5c PE=1 SV=3)

HSP 1 Score: 65.0846 bits (157), Expect = 4.956e-11
Identity = 47/137 (34.31%), Postives = 75/137 (54.74%), Query Frame = 1

Query:    1 EQVSIASNSAPLPDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRKLV 411
            E+   A      P  +G +  +E LK + N  FK K +  A+ +Y++AI+LN  NA YY NR+ AYL   C+  A  D  +AI  DKK +K Y RR  +  +L  ++ AL D++  + ++P +K A +  +   K+V
Sbjct:    7 ERTECAETPRDEPPADGTLKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPGNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPNDKDAKMKYQECSKIV 143

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy Swiss-Prot
Match: PPP5_HUMAN (Serine/threonine-protein phosphatase 5 OS=Homo sapiens GN=PPP5C PE=1 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 5.282e-11
Identity = 45/125 (36.00%), Postives = 73/125 (58.40%), Query Frame = 1

Query:   37 PDLNGNMDASELLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRKLV 411
            P  +G +  +E LK + N  FK K +  A+ +Y++AI+LN +NA YY NR+ AYL   C+  A  D  +AI  DKK +K Y RR  +  +L  ++ AL D++  + ++P +K A +  +   K+V
Sbjct:   19 PPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV 143

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy Swiss-Prot
Match: RPAP3_HUMAN (RNA polymerase II-associated protein 3 OS=Homo sapiens GN=RPAP3 PE=1 SV=2)

HSP 1 Score: 65.0846 bits (157), Expect = 5.509e-11
Identity = 46/110 (41.82%), Postives = 67/110 (60.91%), Query Frame = 1

Query:   76 KEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRK 405
            K++GN  FK  ++ +A+  YT  I  +G NA    NRA AYL++  +++AE+DC +AI  D    KA+ RRGTAR  L    EA +DF+  L+LEP NK A     +++K
Sbjct:  286 KDRGNGFFKEGKYERAIECYTRGIAADGANALLPANRAMAYLKIQKYEEAEKDCTQAILLDGSYSKAFARRGTARTFLGKLNEAKQDFETVLLLEPGNKQAVTELSKIKK 395

HSP 2 Score: 64.3142 bits (155), Expect = 1.098e-10
Identity = 42/100 (42.00%), Postives = 62/100 (62.00%), Query Frame = 1

Query:   70 LLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQN 369
            +LKEKGN  FK  ++++A++ YT+ +  +  N     NRA+AY  L  F  AE DCN A++ ++   KAY RRG AR +L   +EA +D++  L LEP N
Sbjct:  135 VLKEKGNKYFKQGKYDEAIDCYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAVALNRSYTKAYSRRGAARFALQKLEEAKKDYERVLELEPNN 234

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy Swiss-Prot
Match: RPAP3_RAT (RNA polymerase II-associated protein 3 OS=Rattus norvegicus GN=Rpap3 PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 7.371e-11
Identity = 47/110 (42.73%), Postives = 65/110 (59.09%), Query Frame = 1

Query:   76 KEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQNKVANLAEKRLRK 405
            K+ GN  FK  ++ +A+  YT  I  + TNA    NRA AYL++  +++AE DC +AI  D    KA+ RRGTAR  L    EA +DF+  L+LEP NK A     R++K
Sbjct:  286 KDLGNGFFKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKYEEAERDCTQAILLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAVTELSRIKK 395

HSP 2 Score: 61.6178 bits (148), Expect = 7.316e-10
Identity = 42/100 (42.00%), Postives = 59/100 (59.00%), Query Frame = 1

Query:   70 LLKEKGNAAFKGKQWNKAVNYYTEAIKLXXXXXXXXXXXXXXXLELGCFQQAEEDCNKAISFDKKNVKAYLRRGTARDSLLCYKEALEDFKHALVLEPQN 369
            +LKEKGN  FK  ++++A+  YT+ +  +  N     NRA+AY  L  F  AE DCN AI+  +   KAY RRG AR +L   ++A +D+   L LEP N
Sbjct:  135 VLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRSYTKAYARRGAARFALQKLEDARKDYVKVLELEPDN 234

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0MEB5_GOSAR	5.052e-74	100.00	Amidase 1-like protein OS=Gossypium arboreum GN=F3...	[more]
A0A0D2PXP7_GOSRA	5.929e-73	97.83	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2NGY2_GOSRA	1.282e-72	97.83	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061E2D6_THECC	1.007e-66	91.24	Translocon at the outer membrane of chloroplasts 6...	[more]
A0A067KXG8_JATCU	7.686e-66	87.68	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
D7TR56_VITVI	1.697e-64	88.41	Putative uncharacterized protein OS=Vitis vinifera...	[more]
M5VMQ8_PRUPE	1.168e-63	85.51	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
A0A068TQ00_COFCA	9.619e-63	83.33	Coffea canephora DH200=94 genomic scaffold, scaffo...	[more]
A0A0A0K408_CUCSA	4.958e-58	83.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_...	[more]
K4CZZ3_SOLLC	8.710e-57	75.18	Uncharacterized protein OS=Solanum lycopersicum GN...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0012411 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
OE64M_ARATH	8.521e-54	75.91	Outer envelope protein 64, mitochondrial OS=Arabid...	[more]
TOC64_PEA	1.894e-36	63.24	Translocon at the outer membrane of chloroplasts 6...	[more]
OE64C_ARATH	1.298e-33	67.52	Outer envelope protein 64, chloroplastic OS=Arabid...	[more]
TOM34_RAT	1.202e-11	36.94	Mitochondrial import receptor subunit TOM34 OS=Rat...	[more]
RPAP3_MOUSE	3.124e-11	42.73	RNA polymerase II-associated protein 3 OS=Mus musc...	[more]
SGTB_HUMAN	3.702e-11	41.18	Small glutamine-rich tetratricopeptide repeat-cont...	[more]
PPP5_MOUSE	4.956e-11	34.31	Serine/threonine-protein phosphatase 5 OS=Mus musc...	[more]
PPP5_HUMAN	5.282e-11	36.00	Serine/threonine-protein phosphatase 5 OS=Homo sap...	[more]
RPAP3_HUMAN	5.509e-11	41.82	RNA polymerase II-associated protein 3 OS=Homo sap...	[more]
RPAP3_RAT	7.371e-11	42.73	RNA polymerase II-associated protein 3 OS=Rattus n...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019734	Tetratricopeptide repeat	SMART	SM00028	tpr_5	coord: 45..78 e-value: 2.8E-6 score: 36.9 coord: 79..112 e-value: 0.0022 score: 27.2 coord: 11..44 e-value: 8.0E-5 score: 32.0
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 45..78 score: 8.378
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 79..112 score: 10.001
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 11..44 score: 8.703
IPR013105	Tetratricopeptide repeat 2	PFAM	PF07719	TPR_2	coord: 12..44 e-value: 1.8E-5 score: 24.4
IPR011990	Tetratricopeptide-like helical domain	GENE3D	1.25.40.10		coord: 9..115 e-value: 2.0E-35 score: 121.3
IPR011990	Tetratricopeptide-like helical domain	SUPERFAMILY	48452	TPR-like	coord: 7..116
IPR001440	Tetratricopeptide repeat 1	PFAM	PF00515	TPR_1	coord: 46..78 e-value: 4.5E-8 score: 32.4
None	No IPR available	PANTHER	PTHR22904	TPR REPEAT CONTAINING PROTEIN	coord: 7..125
IPR013026	Tetratricopeptide repeat-containing domain	PROSITE	PS50293	TPR_REGION	coord: 11..112 score: 23.644

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0012411 ID=g.arboreum_cottongen_reftransV1_0012411; Name=g.arboreum_cottongen_reftransV1_0012411; organism=Gossypium arboreum; type=contig; length=647bp
GAACAAGTCAGCATAGCATCCAATTCAGCACCATTGCCTGATCTCAATGG
TAATATGGATGCTTCTGAACTGTTGAAGGAAAAGGGAAATGCTGCTTTTA
AGGGAAAGCAATGGAACAAGGCAGTTAATTATTACACTGAAGCTATTAAG
TTAAATGGGACAAATGCGACATACTATAACAACCGGGCAGCAGCTTACTT
GGAACTAGGATGCTTTCAGCAAGCTGAAGAGGACTGCAATAAGGCAATAT
CATTTGACAAAAAGAATGTGAAGGCATATCTGAGACGTGGGACAGCCAGA
GACTCACTACTCTGTTATAAAGAGGCCCTTGAAGATTTCAAACACGCATT
GGTTCTAGAGCCTCAAAATAAAGTAGCCAACCTCGCAGAGAAAAGACTAC
GAAAACTGGTTAGTTGATACTGCTCTTCTCTGCTTCGCTTCTTGTCTAAC
AAATGCGAAACAAGGTTGACCGAAGATAGGCGCAATCTTTGTGCAATTTA
CCCTAACCTTCGGTAAACGGAAAATCAAAGTAAAAGCATGTTGGTTAGAG
GGTGCTGCTGGTGCAGTTTTTGGCCGCAATTTCTTTTCCTTCGACACATT
GTTTCTGTGTAATCAGTATATGTTCGACCTATGCAATCTTGTTGAGA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR019734	TPR_repeat
IPR013105	TPR_2
IPR011990	TPR-like_helical_dom_sf
IPR001440	TPR_1
IPR013026	TPR-contain_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Search form

g.arboreum_cottongen_reftransV1_0012411, g.arboreum_cottongen_reftransV1_0012411 (contig) Gossypium arboreum

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