g.arboreum_cottongen_reftransV1_0006192, g.arboreum_cottongen_reftransV1_0006192 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0006192
Unique Name	g.arboreum_cottongen_reftransV1_0006192
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	465

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr12	chromosome	g.arboreum_cottongen_reftransV1_0006192:1..465 . Chr12:5704900..5705364 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006192 vs. ExPASy TrEMBL
Match: A0A0B0NPP4_GOSAR (Transporter protein OS=Gossypium arboreum GN=F383_18950 PE=4 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 1.105e-76
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = -3

Query:    2 GVIFLSWMSFQEILEFLNFLYSIGMLLEFAAFIKLRIKKPDLHRPYRVPLETFGVTXXXXXXXXXXXXXXXXASATTLXXXXXXXXXXILMYPVLVHAKDRKWTQFDDIEQLVVPLDNLDTPRPKQEVSDEASVSLLPDLTSPGINQEVTETSP 463
            GVIFLSWMSFQEILEFLNFLYSIGMLLEFAAFIKLRIKKPDLHRPYRVPLETFGVTMLCLPPALLLVLVMCLASATTLIVSVIVIIIGILMYPVLVHAKDRKWTQFDDIEQLVVPLDNLDTPRPKQEVSDEASVSLLPDLTSPGINQEVTETSP
Sbjct:  338 GVIFLSWMSFQEILEFLNFLYSIGMLLEFAAFIKLRIKKPDLHRPYRVPLETFGVTMLCLPPALLLVLVMCLASATTLIVSVIVIIIGILMYPVLVHAKDRKWTQFDDIEQLVVPLDNLDTPRPKQEVSDEASVSLLPDLTSPGINQEVTETSP 491

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006192 vs. ExPASy TrEMBL
Match: A0A0D2V6S3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G148400 PE=4 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 7.611e-76
Identity = 151/154 (98.05%), Postives = 152/154 (98.70%), Query Frame = -3

Query:    2 GVIFLSWMSFQEILEFLNFLYSIGMLLEFAAFIKLRIKKPDLHRPYRVPLETFGVTXXXXXXXXXXXXXXXXASATTLXXXXXXXXXXILMYPVLVHAKDRKWTQFDDIEQLVVPLDNLDTPRPKQEVSDEASVSLLPDLTSPGINQEVTETSP 463
            GVIFLSWMSFQEILEFLNFLYSIGMLLEFAAFIKLRIKKPDLHRPYRVPLETFGVTMLCLPPALLLVLVMCLASATT IVS IVIIIGILMYPVLVHAKDRKWTQFDDIEQLVVPLDNLDTPRPKQEVSDEASVSLLPDLTSPGINQEV+ETSP
Sbjct:  338 GVIFLSWMSFQEILEFLNFLYSIGMLLEFAAFIKLRIKKPDLHRPYRVPLETFGVTMLCLPPALLLVLVMCLASATTFIVSGIVIIIGILMYPVLVHAKDRKWTQFDDIEQLVVPLDNLDTPRPKQEVSDEASVSLLPDLTSPGINQEVSETSP 491

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006192 vs. ExPASy TrEMBL
Match: A0A061E0D0_THECC (Amino acid permease family protein isoform 1 OS=Theobroma cacao GN=TCM_007201 PE=4 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.619e-56
Identity = 124/153 (81.05%), Postives = 137/153 (89.54%), Query Frame = -3

Query:    5 GVIFLSWMSFQEILEFLNFLYSIGMLLEFAAFIKLRIKKPDLHRPYRVPLETFGVTXXXXXXXXXXXXXXXXASATTLXXXXXXXXXXILMYPVLVHAKDRKWTQFDDIEQLVVPLDNLDTPRPKQEVSDEASVSLLPDLTSPGINQEVTETS 463
            GVIFLSWMSFQEILEFLNFLYSIGMLLEFAAFIKLR+KKPDLHRPYRVPL+TFGVTMLCLPPALLLVLVMCLAS  T +VS +VII+GI +YP LVHAK+RKWTQF DIEQLVVP +NLD P+P QEV+DEASVSLLP L    I +E++ETS
Sbjct:  341 GVIFLSWMSFQEILEFLNFLYSIGMLLEFAAFIKLRVKKPDLHRPYRVPLQTFGVTMLCLPPALLLVLVMCLASVKTFVVSGMVIIVGIFLYPALVHAKNRKWTQF-DIEQLVVPSNNLDVPQPHQEVTDEASVSLLPVLDPLEIGRELSETS 492

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006192 vs. ExPASy TrEMBL
Match: U5GX08_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s30330g PE=4 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 8.768e-44
Identity = 104/156 (66.67%), Postives = 123/156 (78.85%), Query Frame = -3

Query:    8 GVIFLSWMSFQEILEFLNFLYSIGMLLEFAAFIKLRIKKPDLHRPYRVPLETFGVTXXXXXXXXXXXXXXXXASATTLXXXXXXXXXXILMYPVLVHAKDRKWTQFDDIEQLVVPLDNLDTP----RPKQEVSDEASVSLLPDLTSPGINQEVTET 463
            GVIFLSWMSFQEILEFLNFLY+IGMLLEFAAFIKLRIKKP+LHRPY+VPL+T G T+LCLPPA+LLVLVMCLAS  T +V  +VI++G L+YP LVHAKDRKW +FD  E  +    +L+      +P QEV+DEASVSLL DL+   + QE  E 
Sbjct:  164 GVIFLSWMSFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPELHRPYKVPLQTLGATLLCLPPAMLLVLVMCLASVQTFLVCSVVILLGFLLYPTLVHAKDRKWAKFDTDEPGLPSSTSLEENSVLLQPHQEVADEASVSLLSDLSPTKLGQERGEV 319

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006192 vs. ExPASy TrEMBL
Match: F6H669_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0091g00600 PE=4 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.028e-42
Identity = 105/147 (71.43%), Postives = 121/147 (82.31%), Query Frame = -3

Query:   38 GVIFLSWMSFQEILEFLNFLYSIGMLLEFAAFIKLRIKKPDLHRPYRVPLETFGVTXXXXXXXXXXXXXXXXASATTLXXXXXXXXXXILMYPVLVHAKDRKWTQFDDIEQLVVPLDNLDTPRP-----KQEVSDEASVSLLPDLTS 463
            GVIFLSWMSFQEI+EFLNFLYSIGMLLEFAAFIKLRIKKPDLHRPY+VPL+TFGV MLCLPP+LLLVLVMCLAS  T +VS +VI++G  +YP +VHAKDRKW +F   EQ  VP DN+    P      QE +DEASVSL+P+L+S
Sbjct:  341 GVIFLSWMSFQEIVEFLNFLYSIGMLLEFAAFIKLRIKKPDLHRPYKVPLQTFGVIMLCLPPSLLLVLVMCLASIRTFLVSGVVIVLGFFLYPTVVHAKDRKWARFVT-EQPAVPSDNILEAHPIMSQLHQEAADEASVSLIPNLSS 486

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006192 vs. ExPASy TrEMBL
Match: B9HMX7_POPTR (Amino acid permease family protein OS=Populus trichocarpa GN=POPTR_0009s09350g PE=4 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 9.846e-42
Identity = 107/157 (68.15%), Postives = 124/157 (78.98%), Query Frame = -3

Query:    8 GVIFLSWMSFQEILEFLNFLYSIGMLLEFAAFIKLRIKKPDLHRPYRVPLETFGVTXXXXXXXXXXXXXXXXASATTLXXXXXXXXXXILMYPVLVHAKDRKWTQFDDIEQLVVPLD-----NLDTPRPKQEVSDEASVSLLPDLTSPGINQEVTET 463
            GVIFLSWMSFQEILEFLNFLY+IGMLLEFAAFIKLRIKKP+LHRPY+VPL+TFG  +LCLPPALLLVLVMCLAS  T +VS +VI++G L+YP LVHAKDRKW +FD  E+  +P +     N     P Q+V+DEASVSLL DL S  + QE  E 
Sbjct:  338 GVIFLSWMSFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPELHRPYKVPLQTFGAALLCLPPALLLVLVMCLASMRTFLVSGVVILLGFLLYPTLVHAKDRKWAKFDT-EEPGLPSNTSREENSVFLHPHQQVADEASVSLLSDLPSTELGQESCEV 493

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006192 vs. ExPASy TrEMBL
Match: B9SNC5_RICCO (Amino acid transporter, putative OS=Ricinus communis GN=RCOM_0174790 PE=4 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.234e-39
Identity = 102/154 (66.23%), Postives = 120/154 (77.92%), Query Frame = -3

Query:    8 GVIFLSWMSFQEILEFLNFLYSIGMLLEFAAFIKLRIKKPDLHRPYRVPLETFGVTXXXXXXXXXXXXXXXXASATTLXXXXXXXXXXILMYPVLVHAKDRKWTQFDDIEQLVVPLDNLDTPRPKQEVS--DEASVSLLPDLTSPGINQEVTET 463
            GV+FLSWMSFQEILEFLNFLY+IGMLLEFAAFIKLR+KKP+LHRPY+VPLETFG T+LCLPP++LLVLVMCLAS  T +VS  VI +G ++YP LV AKDR W +FD  EQ  VP  +       QEV+  DEASV LL DL++   +QE  ET
Sbjct:  340 GVVFLSWMSFQEILEFLNFLYAIGMLLEFAAFIKLRVKKPELHRPYKVPLETFGATLLCLPPSILLVLVMCLASLRTFLVSGAVIFLGFILYPTLVQAKDRNWIKFDA-EQPEVPSSSTVAADGSQEVAVVDEASVMLLSDLSTTETDQEGHET 492

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006192 vs. ExPASy TrEMBL
Match: V4S6Q6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028240mg PE=4 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.789e-39
Identity = 99/118 (83.90%), Postives = 105/118 (88.98%), Query Frame = -3

Query:  110 GVIFLSWMSFQEILEFLNFLYSIGMLLEFAAFIKLRIKKPDLHRPYRVPLETFGVTXXXXXXXXXXXXXXXXASATTLXXXXXXXXXXILMYPVLVHAKDRKWTQFDDIEQLVVPLDN 463
            GVIFLSWMSFQEILEFLNFLY+IGMLLEFAAFIKLRIKKPDLHRPY+VPL+TFGVTMLCL PA+LLVLVMCLAS  T IVS  VII+G L+YPVLVHAKDRKWTQF DIEQ   P D 
Sbjct:  341 GVIFLSWMSFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLHRPYKVPLQTFGVTMLCLLPAVLLVLVMCLASLRTFIVSGGVIIVGFLLYPVLVHAKDRKWTQF-DIEQPTSPSDT 457

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006192 vs. ExPASy TrEMBL
Match: A0A067ERX1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g010647mg PE=4 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.935e-39
Identity = 99/118 (83.90%), Postives = 105/118 (88.98%), Query Frame = -3

Query:  110 GVIFLSWMSFQEILEFLNFLYSIGMLLEFAAFIKLRIKKPDLHRPYRVPLETFGVTXXXXXXXXXXXXXXXXASATTLXXXXXXXXXXILMYPVLVHAKDRKWTQFDDIEQLVVPLDN 463
            GVIFLSWMSFQEILEFLNFLY+IGMLLEFAAFIKLRIKKPDLHRPY+VPL+TFGVTMLCL PA+LLVLVMCLAS  T IVS  VII+G L+YPVLVHAKDRKWTQF DIEQ   P D 
Sbjct:  341 GVIFLSWMSFQEILEFLNFLYAIGMLLEFAAFIKLRIKKPDLHRPYKVPLQTFGVTMLCLLPAVLLVLVMCLASLRTFIVSGGVIIVGFLLYPVLVHAKDRKWTQF-DIEQPTSPSDT 457

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006192 vs. ExPASy TrEMBL
Match: M5VP15_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004526mg PE=4 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 4.041e-38
Identity = 103/146 (70.55%), Postives = 114/146 (78.08%), Query Frame = -3

Query:   41 GVIFLSWMSFQEILEFLNFLYSIGMLLEFAAFIKLRIKKPDLHRPYRVPLETFGVTXXXXXXXXXXXXXXXXASATTLXXXXXXXXXXILMYPVLVHAKDRKWTQFDDIEQ-----LVVPLDNLDTPRPKQEVSDEASVSLLPDLT 463
            GVIFLSWMSFQEILEFLNFLY+IGMLLEFAAFIKLR+KKPDLHRPY+VP +TFG TMLCLPPALLLVLVMCLAS  T  VS  VII+G+L+YP+LVHAKDRKW  FD  EQ     L  P  +    +   E  DEASV LL DL+
Sbjct:  342 GVIFLSWMSFQEILEFLNFLYAIGMLLEFAAFIKLRVKKPDLHRPYKVPFQTFGATMLCLPPALLLVLVMCLASLRTFFVSGCVIIVGVLLYPLLVHAKDRKWAHFDA-EQPAEPPLNCPAGHSSALQLHPEDVDEASVGLLTDLS 486

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006192 vs. ExPASy Swiss-Prot
Match: PHSD_ARATH (Probable polyamine transporter At3g19553 OS=Arabidopsis thaliana GN=At3g19553 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.407e-33
Identity = 82/139 (58.99%), Postives = 110/139 (79.14%), Query Frame = -3

Query:   50 GVIFLSWMSFQEILEFLNFLYSIGMLLEFAAFIKLRIKKPDLHRPYRVPLETFGVTXXXXXXXXXXXXXXXXASATTLXXXXXXXXXXILMYPVLVHAKDRKWTQFDDIEQLVVPLDNLDT-PRPKQEVSDEASVSLLP 463
            GVIFLSWMSFQEI+EFLNFLY++GMLLEFAAF+KLRIKKPDLHRPYRVPL TFGV+MLCLPP+LL++LVM LA+  T ++S ++I++G  +YP L   K+++W +F  I +   P+  + +  +  +E  DE++ SLLP
Sbjct:  343 GVIFLSWMSFQEIIEFLNFLYALGMLLEFAAFVKLRIKKPDLHRPYRVPLNTFGVSMLCLPPSLLVILVMVLAAPKTFLISGVIIVLGFCLYPFLTLVKEKQWARF--IPEETRPVSGVSSESQLDEEHGDESAASLLP 479

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006192 vs. ExPASy Swiss-Prot
Match: PHSB_ARATH (Probable polyamine transporter At1g31830 OS=Arabidopsis thaliana GN=At1g31830 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.651e-16
Identity = 47/107 (43.93%), Postives = 76/107 (71.03%), Query Frame = -3

Query:  143 GVIFLSWMSFQEILEFLNFLYSIGMLLEFAAFIKLRIKKPDLHRPYRVPLETFGVTXXXXXXXXXXXXXXXXASATTLXXXXXXXXXXILMYPVLVHAKDRKWTQFD 463
            GV+ LSW+SFQEI+   N LY +GM+LEF AF+++R+K P   RPY++P+ T G  ++C+PP +L+  V+ L+S     VS++++IIG L++P+L H   ++W +F 
Sbjct:  368 GVVLLSWLSFQEIVAAENLLYCVGMILEFIAFVRMRMKHPAASRPYKIPIGTTGSILMCIPPTILICAVVALSSLKVAAVSIVMMIIGFLIHPLLNHMDRKRWVKFS 474

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006192 vs. ExPASy Swiss-Prot
Match: PUT1_ORYSJ (Polyamine transporter PUT1 OS=Oryza sativa subsp. japonica GN=PUT1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.776e-14
Identity = 47/106 (44.34%), Postives = 70/106 (66.04%), Query Frame = -3

Query:  146 GVIFLSWMSFQEILEFLNFLYSIGMLLEFAAFIKLRIKKPDLHRPYRVPLETFGVTXXXXXXXXXXXXXXXXASATTLXXXXXXXXXXILMYPVLVHAKDRKWTQF 463
            GV+ LS MSFQEI+   NFLY  GMLLEF AFI  R+++PD  RPYRVPL T G   + +PP  L+ +V+ L++    +VS+  + +G+++ P L   + ++W +F
Sbjct:  402 GVLLLSMMSFQEIVAAENFLYCFGMLLEFVAFILHRVRRPDAARPYRVPLGTAGCVAMLVPPTALIAVVLALSTLKVAVVSLGAVAMGLVLQPALRFVEKKRWLRF 507

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006192 vs. ExPASy Swiss-Prot
Match: PUT1_ORYSI (Polyamine transporter PUT1 OS=Oryza sativa subsp. indica GN=PUT1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.776e-14
Identity = 47/106 (44.34%), Postives = 70/106 (66.04%), Query Frame = -3

Query:  146 GVIFLSWMSFQEILEFLNFLYSIGMLLEFAAFIKLRIKKPDLHRPYRVPLETFGVTXXXXXXXXXXXXXXXXASATTLXXXXXXXXXXILMYPVLVHAKDRKWTQF 463
            GV+ LS MSFQEI+   NFLY  GMLLEF AFI  R+++PD  RPYRVPL T G   + +PP  L+ +V+ L++    +VS+  + +G+++ P L   + ++W +F
Sbjct:  402 GVLLLSMMSFQEIVAAENFLYCFGMLLEFVAFILHRVRRPDAARPYRVPLGTAGCVAMLVPPTALIAVVLALSTLKVAVVSLGAVAMGLVLQPALRFVEKKRWLRF 507

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006192 vs. ExPASy Swiss-Prot
Match: PHSA_ARATH (Probable polyamine transporter At1g31820 OS=Arabidopsis thaliana GN=At1g31820 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.220e-12
Identity = 48/106 (45.28%), Postives = 72/106 (67.92%), Query Frame = -3

Query:  146 GVIFLSWMSFQEILEFLNFLYSIGMLLEFAAFIKLRIKKPDLHRPYRVPLETFGVTXXXXXXXXXXXXXXXXASATTLXXXXXXXXXXILMYPVLVHAKDRKWTQF 463
            GV+ LS +SFQEI+   N LY  GM+LEF AF++LR K P   RPY++P+ T G  ++C+PP +L+ LV+ L++    +VS ++++IG LM P L H   +KW +F
Sbjct:  355 GVLLLSGLSFQEIIAAENLLYCGGMILEFIAFVRLRKKHPAASRPYKIPVGTVGSILICVPPIVLICLVIVLSTIKVALVSFVMVVIGFLMKPCLNHMDGKKWVKF 460

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006192 vs. ExPASy Swiss-Prot
Match: RMV1_ARATH (Polyamine transporter RMV1 OS=Arabidopsis thaliana GN=RMV1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.830e-12
Identity = 28/54 (51.85%), Postives = 38/54 (70.37%), Query Frame = -3

Query:  302 GVIFLSWMSFQEILEFLNFLYSIGMLLEFAAFIKLRIKKPDLHRPYRVPLETFG 463
            GVI LSW+SFQEI+   N LY  GM+LEF  F++LR+K P   RP+++P+   G
Sbjct:  374 GVIILSWLSFQEIVAAENLLYCFGMVLEFITFVRLRMKYPAASRPFKIPVGVLG 427

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0006192 vs. ExPASy Swiss-Prot
Match: PHSC_ARATH (Probable polyamine transporter At3g13620 OS=Arabidopsis thaliana GN=At3g13620 PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 3.673e-11
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = -3

Query:  299 LSWMSFQEILEFLNFLYSIGMLLEFAAFIKLRIKKPDLHRPYRVPLETFGV 451
            LS+M+F +I+   NFLY++GM LEFA+FI LR K P L RPYRVPL+  G+
Sbjct:  354 LSYMNFTDIISSANFLYTLGMFLEFASFIWLRRKLPQLKRPYRVPLKIPGL 404

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0006192 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0006192 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0006192 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0NPP4_GOSAR	1.105e-76	100.00	Transporter protein OS=Gossypium arboreum GN=F383_...	[more]
A0A0D2V6S3_GOSRA	7.611e-76	98.05	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061E0D0_THECC	4.619e-56	81.05	Amino acid permease family protein isoform 1 OS=Th...	[more]
U5GX08_POPTR	8.768e-44	66.67	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
F6H669_VITVI	1.028e-42	71.43	Putative uncharacterized protein OS=Vitis vinifera...	[more]
B9HMX7_POPTR	9.846e-42	68.15	Amino acid permease family protein OS=Populus tric...	[more]
B9SNC5_RICCO	1.234e-39	66.23	Amino acid transporter, putative OS=Ricinus commun...	[more]
V4S6Q6_9ROSI	4.789e-39	83.90	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
A0A067ERX1_CITSI	4.935e-39	83.90	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
M5VP15_PRUPE	4.041e-38	70.55	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]

Pages

BLAST of g.arboreum_cottongen_reftransV1_0006192 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 7


Match Name	E-value	Identity	Description
PHSD_ARATH	7.407e-33	58.99	Probable polyamine transporter At3g19553 OS=Arabid...	[more]
PHSB_ARATH	7.651e-16	43.93	Probable polyamine transporter At1g31830 OS=Arabid...	[more]
PUT1_ORYSJ	3.776e-14	44.34	Polyamine transporter PUT1 OS=Oryza sativa subsp. ...	[more]
PUT1_ORYSI	3.776e-14	44.34	Polyamine transporter PUT1 OS=Oryza sativa subsp. ...	[more]
PHSA_ARATH	2.220e-12	45.28	Probable polyamine transporter At1g31820 OS=Arabid...	[more]
RMV1_ARATH	4.830e-12	51.85	Polyamine transporter RMV1 OS=Arabidopsis thaliana...	[more]
PHSC_ARATH	3.673e-11	58.82	Probable polyamine transporter At3g13620 OS=Arabid...	[more]

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002293	Amino acid/polyamine transporter I	PANTHER	PTHR11785	AMINO ACID TRANSPORTER	coord: 1..127
None	No IPR available	PANTHER	PTHR11785:SF366	SUBFAMILY NOT NAMED	coord: 1..127
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..11
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 44..65
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 71..91
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 66..70
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 92..150
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 33..43
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..32
None	No IPR available	TMHMM	TMhelix		coord: 10..32
None	No IPR available	TMHMM	TMhelix		coord: 70..92
None	No IPR available	TMHMM	TMhelix		coord: 44..66

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0006192 ID=g.arboreum_cottongen_reftransV1_0006192; Name=g.arboreum_cottongen_reftransV1_0006192; organism=Gossypium arboreum; type=contig; length=465bp
CAGGTGAAGTTTCTGTGACTTCTTGGTTAATCCCCGGTGATGTTAAATCT
GGAAGAAGACTAACCGAGGCTTCATCCGAAACTTCTTGTTTAGGTCGGGG
CGTGTCCAGATTATCTAAAGGCACCACCAGTTGTTCTATATCATCAAATT
GGGTCCATTTCCTATCCTTTGCATGAACTAAAACAGGGTACATTAAGATC
CCAATGATAATAACTATAACACTTACAATTAATGTTGTTGCAGAAGCTAG
GCACATGACAAGAACAAGTAACAATGCAGGTGGCAAGCAAAGCATTGTTA
CACCAAATGTTTCCAAAGGGACCCTGTAAGGTCTATGCAGATCTGGCTTT
TTGATTCTCAGTTTTATGAAAGCAGCAAATTCGAGAAGCATTCCAATTGA
GTAAAGGAAATTCAGGAATTCCAGAATTTCCTGGAAACTCATCCATGACA
AGAAAATAACTCCAG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR002293	AA/rel_permease1

Vocabulary: **Molecular Function**
Term	Definition
GO:0015171	amino acid transmembrane transporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0003333	amino acid transmembrane transport

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g.arboreum_cottongen_reftransV1_0006192, g.arboreum_cottongen_reftransV1_0006192 (contig) Gossypium arboreum

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