g.arboreum_cottongen_reftransV1_0001666, g.arboreum_cottongen_reftransV1_0001666 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0001666
Unique Name	g.arboreum_cottongen_reftransV1_0001666
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	750

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr12	chromosome	g.arboreum_cottongen_reftransV1_0001666:5..750 . Chr12:30816247..30819385 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy TrEMBL
Match: A0A0D2UZH9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G1630001 PE=4 SV=1)

HSP 1 Score: 430.254 bits (1105), Expect = 1.977e-147
Identity = 232/250 (92.80%), Postives = 238/250 (95.20%), Query Frame = -1

Query:    4 VFLYCNSLIRFGGQRKLNRVASMEFPKKNSVNKTG-SEXXXXXXXXXXXXXXXXXALAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLEKFQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVF 750
            VFLYC+SLIRF G +KLNR ASM FPKKN VNKTG SEGVGTADIIIVGAGVAGAALAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGL DCVD+IDAQRLLGYTLYKDGKEA VSFPLEKFQSHVAGRTFHNGRFVQ LRKKVASLHN+SLEQGTVTSLIEENGIVKGVQYK+ESGQVLTAYA LTIVCDGCFSNLRRSLC PKVDIPSYFVGFILTNCNLP KNYGAII+AHPSPIVF
Sbjct:   20 VFLYCSSLIRFRGLKKLNRAASMGFPKKNRVNKTGKSEGVGTADIIIVGAGVAGAALAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLEDCVDEIDAQRLLGYTLYKDGKEAQVSFPLEKFQSHVAGRTFHNGRFVQRLRKKVASLHNISLEQGTVTSLIEENGIVKGVQYKNESGQVLTAYASLTIVCDGCFSNLRRSLCYPKVDIPSYFVGFILTNCNLPTKNYGAIILAHPSPIVF 269

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy TrEMBL
Match: A0A0D2VTH6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G1630001 PE=4 SV=1)

HSP 1 Score: 430.254 bits (1105), Expect = 7.432e-147
Identity = 232/250 (92.80%), Postives = 238/250 (95.20%), Query Frame = -1

Query:    4 VFLYCNSLIRFGGQRKLNRVASMEFPKKNSVNKTG-SEXXXXXXXXXXXXXXXXXALAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLEKFQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVF 750
            VFLYC+SLIRF G +KLNR ASM FPKKN VNKTG SEGVGTADIIIVGAGVAGAALAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGL DCVD+IDAQRLLGYTLYKDGKEA VSFPLEKFQSHVAGRTFHNGRFVQ LRKKVASLHN+SLEQGTVTSLIEENGIVKGVQYK+ESGQVLTAYA LTIVCDGCFSNLRRSLC PKVDIPSYFVGFILTNCNLP KNYGAII+AHPSPIVF
Sbjct:   20 VFLYCSSLIRFRGLKKLNRAASMGFPKKNRVNKTGKSEGVGTADIIIVGAGVAGAALAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLEDCVDEIDAQRLLGYTLYKDGKEAQVSFPLEKFQSHVAGRTFHNGRFVQRLRKKVASLHNISLEQGTVTSLIEENGIVKGVQYKNESGQVLTAYASLTIVCDGCFSNLRRSLCYPKVDIPSYFVGFILTNCNLPTKNYGAIILAHPSPIVF 269

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy TrEMBL
Match: A0A0D2UZL8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G1630001 PE=4 SV=1)

HSP 1 Score: 430.254 bits (1105), Expect = 1.576e-145
Identity = 232/250 (92.80%), Postives = 238/250 (95.20%), Query Frame = -1

Query:    4 VFLYCNSLIRFGGQRKLNRVASMEFPKKNSVNKTG-SEXXXXXXXXXXXXXXXXXALAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLEKFQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVF 750
            VFLYC+SLIRF G +KLNR ASM FPKKN VNKTG SEGVGTADIIIVGAGVAGAALAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGL DCVD+IDAQRLLGYTLYKDGKEA VSFPLEKFQSHVAGRTFHNGRFVQ LRKKVASLHN+SLEQGTVTSLIEENGIVKGVQYK+ESGQVLTAYA LTIVCDGCFSNLRRSLC PKVDIPSYFVGFILTNCNLP KNYGAII+AHPSPIVF
Sbjct:   20 VFLYCSSLIRFRGLKKLNRAASMGFPKKNRVNKTGKSEGVGTADIIIVGAGVAGAALAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLEDCVDEIDAQRLLGYTLYKDGKEAQVSFPLEKFQSHVAGRTFHNGRFVQRLRKKVASLHNISLEQGTVTSLIEENGIVKGVQYKNESGQVLTAYASLTIVCDGCFSNLRRSLCYPKVDIPSYFVGFILTNCNLPTKNYGAIILAHPSPIVF 269

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy TrEMBL
Match: A0A0D2V779_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G162300 PE=4 SV=1)

HSP 1 Score: 410.609 bits (1054), Expect = 1.137e-139
Identity = 222/251 (88.45%), Postives = 230/251 (91.63%), Query Frame = -1

Query:    1 VFLYCNSLIRFGGQRKLNRVASMEFPKKNSVNKTG-SEXXXXXXXXXXXXXXXXXALAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLEKFQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVFY 750
            VFLYCN LIRF G RKLNR ASMEFPKKNSVNKTG SEGVGT DIIIVGAGVAGAALAYSLGKDG RVRVIERDLNAPNRMAGESL PGGYLKLIEL L DCVD+IDAQRLLGYTLYKDGKEA VSFPLEKFQSHVAGRTFHNGRF+Q LRKKVASLHNVSLEQGTVTSLIEENGIVKGV YK+ +G++LT YAPLTIVCDGCFSNLRRSLC  KVDIPSYFVG  LTNCNLP +NYGAII+AHPS IVFY
Sbjct:   21 VFLYCNFLIRFRGLRKLNRAASMEFPKKNSVNKTGKSEGVGTTDIIIVGAGVAGAALAYSLGKDGHRVRVIERDLNAPNRMAGESLTPGGYLKLIELRLEDCVDEIDAQRLLGYTLYKDGKEARVSFPLEKFQSHVAGRTFHNGRFIQRLRKKVASLHNVSLEQGTVTSLIEENGIVKGVHYKNGNGKLLTTYAPLTIVCDGCFSNLRRSLCYSKVDIPSYFVGLTLTNCNLPKENYGAIILAHPSAIVFY 271

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy TrEMBL
Match: A0A0D2TQJ5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G162300 PE=4 SV=1)

HSP 1 Score: 410.223 bits (1053), Expect = 1.088e-137
Identity = 222/251 (88.45%), Postives = 230/251 (91.63%), Query Frame = -1

Query:    1 VFLYCNSLIRFGGQRKLNRVASMEFPKKNSVNKTG-SEXXXXXXXXXXXXXXXXXALAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLEKFQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVFY 750
            VFLYCN LIRF G RKLNR ASMEFPKKNSVNKTG SEGVGT DIIIVGAGVAGAALAYSLGKDG RVRVIERDLNAPNRMAGESL PGGYLKLIEL L DCVD+IDAQRLLGYTLYKDGKEA VSFPLEKFQSHVAGRTFHNGRF+Q LRKKVASLHNVSLEQGTVTSLIEENGIVKGV YK+ +G++LT YAPLTIVCDGCFSNLRRSLC  KVDIPSYFVG  LTNCNLP +NYGAII+AHPS IVFY
Sbjct:   21 VFLYCNFLIRFRGLRKLNRAASMEFPKKNSVNKTGKSEGVGTTDIIIVGAGVAGAALAYSLGKDGHRVRVIERDLNAPNRMAGESLTPGGYLKLIELRLEDCVDEIDAQRLLGYTLYKDGKEARVSFPLEKFQSHVAGRTFHNGRFIQRLRKKVASLHNVSLEQGTVTSLIEENGIVKGVHYKNGNGKLLTTYAPLTIVCDGCFSNLRRSLCYSKVDIPSYFVGLTLTNCNLPKENYGAIILAHPSAIVFY 271

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy TrEMBL
Match: A0A0B0N3N7_GOSAR (Squalene monooxygenase OS=Gossypium arboreum GN=F383_12646 PE=4 SV=1)

HSP 1 Score: 408.297 bits (1048), Expect = 5.000e-137
Identity = 221/251 (88.05%), Postives = 233/251 (92.83%), Query Frame = -1

Query:    1 VFLYCNSLIRFGGQRKLNRVASMEFPKKNSVNKTG-SEXXXXXXXXXXXXXXXXXALAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLEKFQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVFY 750
            VFLY NSLIRF G RKLNR ASM+FPK+NSVNKTG SEGVGT DIIIVGAGVAGAALAYSLGKDGR+VRVIERDLNAPNRMAGESL PGGYLKLIELGL DCVD+IDAQ+LLGYTLYKDGKEA VSFPLEKFQSHVAGRTFHNGRF+Q LRKKVASLHNVSLEQGTVTSLIEENGIVKGV YK+ SG++LT YAPLTIVCDGCFSNLRRSLC PKVDIPS FVG  LTNCNLP +NYGAII+A+PSPIVFY
Sbjct:   21 VFLYRNSLIRFRGLRKLNRAASMDFPKRNSVNKTGKSEGVGTTDIIIVGAGVAGAALAYSLGKDGRQVRVIERDLNAPNRMAGESLTPGGYLKLIELGLEDCVDEIDAQQLLGYTLYKDGKEARVSFPLEKFQSHVAGRTFHNGRFIQRLRKKVASLHNVSLEQGTVTSLIEENGIVKGVHYKNGSGKLLTTYAPLTIVCDGCFSNLRRSLCYPKVDIPSNFVGLTLTNCNLPKENYGAIILANPSPIVFY 271

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy TrEMBL
Match: A0A0D2U912_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_N018600 PE=4 SV=1)

HSP 1 Score: 389.037 bits (998), Expect = 1.933e-129
Identity = 208/251 (82.87%), Postives = 223/251 (88.84%), Query Frame = -1

Query:    1 VFLYCNSLIRFGGQRKLNRVASMEFPKKNSVNKTG-SEXXXXXXXXXXXXXXXXXALAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLEKFQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVFY 750
            +FLYCNSLIRF G  KL R ASMEFPK NSVNKTG SEGVGT DIIIVGAGVAGAALAYSLGKDGRRVR+IERDLN PNR+ GE L PGGY+KLIELGL DCVD+IDAQ+ LGYTLYKDGKE  VS+PLEKFQSH++GRT HNGRFVQ LR K ASLHNV+LEQGTVTSLIE+NGIVKGV YK++SGQVLTAYAPLTIVCDGCFSNLRRSLC PKVDIPSY VG  LTNCNLP KNYGAII+ HPSPI+ Y
Sbjct:   20 LFLYCNSLIRFRGLSKLKRAASMEFPKGNSVNKTGNSEGVGTTDIIIVGAGVAGAALAYSLGKDGRRVRMIERDLNMPNRIVGELLYPGGYIKLIELGLEDCVDEIDAQQFLGYTLYKDGKETLVSYPLEKFQSHISGRTSHNGRFVQRLRIKAASLHNVTLEQGTVTSLIEDNGIVKGVHYKNKSGQVLTAYAPLTIVCDGCFSNLRRSLCYPKVDIPSYLVGLTLTNCNLPKKNYGAIILGHPSPIILY 270

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy TrEMBL
Match: A0A0D2VLS7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_N018600 PE=4 SV=1)

HSP 1 Score: 389.037 bits (998), Expect = 2.201e-129
Identity = 208/251 (82.87%), Postives = 223/251 (88.84%), Query Frame = -1

Query:    1 VFLYCNSLIRFGGQRKLNRVASMEFPKKNSVNKTG-SEXXXXXXXXXXXXXXXXXALAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLEKFQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVFY 750
            +FLYCNSLIRF G  KL R ASMEFPK NSVNKTG SEGVGT DIIIVGAGVAGAALAYSLGKDGRRVR+IERDLN PNR+ GE L PGGY+KLIELGL DCVD+IDAQ+ LGYTLYKDGKE  VS+PLEKFQSH++GRT HNGRFVQ LR K ASLHNV+LEQGTVTSLIE+NGIVKGV YK++SGQVLTAYAPLTIVCDGCFSNLRRSLC PKVDIPSY VG  LTNCNLP KNYGAII+ HPSPI+ Y
Sbjct:   20 LFLYCNSLIRFRGLSKLKRAASMEFPKGNSVNKTGNSEGVGTTDIIIVGAGVAGAALAYSLGKDGRRVRMIERDLNMPNRIVGELLYPGGYIKLIELGLEDCVDEIDAQQFLGYTLYKDGKETLVSYPLEKFQSHISGRTSHNGRFVQRLRIKAASLHNVTLEQGTVTSLIEDNGIVKGVHYKNKSGQVLTAYAPLTIVCDGCFSNLRRSLCYPKVDIPSYLVGLTLTNCNLPKKNYGAIILGHPSPIILY 270

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy TrEMBL
Match: A0A0D2VK35_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_N018600 PE=4 SV=1)

HSP 1 Score: 388.652 bits (997), Expect = 2.250e-129
Identity = 208/251 (82.87%), Postives = 223/251 (88.84%), Query Frame = -1

Query:    1 VFLYCNSLIRFGGQRKLNRVASMEFPKKNSVNKTG-SEXXXXXXXXXXXXXXXXXALAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLEKFQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVFY 750
            +FLYCNSLIRF G  KL R ASMEFPK NSVNKTG SEGVGT DIIIVGAGVAGAALAYSLGKDGRRVR+IERDLN PNR+ GE L PGGY+KLIELGL DCVD+IDAQ+ LGYTLYKDGKE  VS+PLEKFQSH++GRT HNGRFVQ LR K ASLHNV+LEQGTVTSLIE+NGIVKGV YK++SGQVLTAYAPLTIVCDGCFSNLRRSLC PKVDIPSY VG  LTNCNLP KNYGAII+ HPSPI+ Y
Sbjct:   20 LFLYCNSLIRFRGLSKLKRAASMEFPKGNSVNKTGNSEGVGTTDIIIVGAGVAGAALAYSLGKDGRRVRMIERDLNMPNRIVGELLYPGGYIKLIELGLEDCVDEIDAQQFLGYTLYKDGKETLVSYPLEKFQSHISGRTSHNGRFVQRLRIKAASLHNVTLEQGTVTSLIEDNGIVKGVHYKNKSGQVLTAYAPLTIVCDGCFSNLRRSLCYPKVDIPSYLVGLTLTNCNLPKKNYGAIILGHPSPIILY 270

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy TrEMBL
Match: A0A0D2WAK5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_N018600 PE=4 SV=1)

HSP 1 Score: 388.267 bits (996), Expect = 2.396e-129
Identity = 208/251 (82.87%), Postives = 223/251 (88.84%), Query Frame = -1

Query:    1 VFLYCNSLIRFGGQRKLNRVASMEFPKKNSVNKTG-SEXXXXXXXXXXXXXXXXXALAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLEKFQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVFY 750
            +FLYCNSLIRF G  KL R ASMEFPK NSVNKTG SEGVGT DIIIVGAGVAGAALAYSLGKDGRRVR+IERDLN PNR+ GE L PGGY+KLIELGL DCVD+IDAQ+ LGYTLYKDGKE  VS+PLEKFQSH++GRT HNGRFVQ LR K ASLHNV+LEQGTVTSLIE+NGIVKGV YK++SGQVLTAYAPLTIVCDGCFSNLRRSLC PKVDIPSY VG  LTNCNLP KNYGAII+ HPSPI+ Y
Sbjct:   20 LFLYCNSLIRFRGLSKLKRAASMEFPKGNSVNKTGNSEGVGTTDIIIVGAGVAGAALAYSLGKDGRRVRMIERDLNMPNRIVGELLYPGGYIKLIELGLEDCVDEIDAQQFLGYTLYKDGKETLVSYPLEKFQSHISGRTSHNGRFVQRLRIKAASLHNVTLEQGTVTSLIEDNGIVKGVHYKNKSGQVLTAYAPLTIVCDGCFSNLRRSLCYPKVDIPSYLVGLTLTNCNLPKKNYGAIILGHPSPIILY 270

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy Swiss-Prot
Match: ERG16_ARATH (Squalene epoxidase 3 OS=Arabidopsis thaliana GN=SQE3 PE=1 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 2.395e-94
Identity = 133/195 (68.21%), Postives = 163/195 (83.59%), Query Frame = -1

Query:    1 LAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLEKFQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVFY 585
            LA++LGK+GRRV VIERDL  P+R+ GE L PGGYLKLIELGL DCV DIDAQR+LGY L+KDGK   +S+PL++F S VAGR+FHNGRFVQ +R+K + L NV +EQGTVTSL+EENGI+KGVQYK++ GQ L ++APLTIVCDGCFSNLRRSLC PKV++PS FVG +L NC LP  N+G +++  PSPI+FY
Sbjct:   69 LAHTLGKEGRRVHVIERDLTEPDRIVGELLQPGGYLKLIELGLEDCVKDIDAQRVLGYALFKDGKHTKLSYPLDQFDSDVAGRSFHNGRFVQRMREKASLLPNVRMEQGTVTSLVEENGIIKGVQYKTKDGQELKSFAPLTIVCDGCFSNLRRSLCKPKVEVPSNFVGLVLENCELPFPNHGHVVLGDPSPILFY 263

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy Swiss-Prot
Match: ERG1_PANGI (Squalene monooxygenase OS=Panax ginseng PE=2 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 5.592e-91
Identity = 135/195 (69.23%), Postives = 161/195 (82.56%), Query Frame = -1

Query:    1 LAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLEKFQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVFY 585
            LAY+L  DGRRV VIERDL   +R+ GE L PGGYLKLIELGL DCV++IDAQR+ GY LY DGK   +S+PLEKF S VAGR+FHNGRFVQ +R+K ASL NV +EQGTVTSL+E+ G VKGVQYK++ GQ L+A+APLTIVCDGCFSNLRRSLC+PKV++PS FVG IL N +LP  N+G +I+A PSPI+FY
Sbjct:   89 LAYTLANDGRRVHVIERDLTEQDRIVGELLQPGGYLKLIELGLEDCVNEIDAQRVFGYALYMDGKNTRLSYPLEKFHSDVAGRSFHNGRFVQRMREKAASLPNVRMEQGTVTSLVEKKGSVKGVQYKTKDGQELSAFAPLTIVCDGCFSNLRRSLCNPKVEVPSCFVGLILENIDLPHINHGHVILADPSPILFY 283

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy Swiss-Prot
Match: ERG14_ARATH (Squalene epoxidase 1 OS=Arabidopsis thaliana GN=SQE1 PE=1 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 5.347e-89
Identity = 126/195 (64.62%), Postives = 163/195 (83.59%), Query Frame = -1

Query:    1 LAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLEKFQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVFY 585
            LAY+LGKD RRV VIERDL+ P+R+ GE L PGGYLKL+ELG+ DCV++IDAQR+ GY L+K+GK   +++PLEKF   V+GR+FHNGRF+Q +R+K ASL NV LEQGTV SL+EENG +KGV+YK+++G+  TA+A LTIVCDGCFSNLRRSLC+P+V++PS FVG +L NCNLP  N+G +++A PSPI+ Y
Sbjct:   75 LAYTLGKDKRRVHVIERDLSEPDRIVGELLQPGGYLKLLELGIEDCVEEIDAQRVYGYALFKNGKRIRLAYPLEKFHEDVSGRSFHNGRFIQRMREKAASLPNVQLEQGTVLSLLEENGTIKGVRYKNKAGEEQTAFAALTIVCDGCFSNLRRSLCNPQVEVPSCFVGLVLENCNLPYANHGHVVLADPSPILMY 269

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy Swiss-Prot
Match: ERG15_ARATH (Squalene epoxidase 2, mitochondrial OS=Arabidopsis thaliana GN=SQE2 PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 9.754e-88
Identity = 125/195 (64.10%), Postives = 156/195 (80.00%), Query Frame = -1

Query:    1 LAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLEKFQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVFY 585
            LA++LGK+GRRV VIERD +  +R+ GE L PGGYLKLIELGL DCV  IDAQR+LGY L+KDGK   +++PLE F S VAGR+FHNGRFVQ +R+K  +L NV LEQGTVTSL+EE+G +KGV+Y+++ G    ++APLTIVCDGCFSNLRRSLC PKVD+PS FVG +L NC LP  N+G +++  PSPI+ Y
Sbjct:  137 LAHTLGKEGRRVHVIERDFSEQDRIVGELLQPGGYLKLIELGLEDCVKKIDAQRVLGYVLFKDGKHTKLAYPLETFDSDVAGRSFHNGRFVQRMREKALTLSNVRLEQGTVTSLLEEHGTIKGVRYRTKEGNEFRSFAPLTIVCDGCFSNLRRSLCKPKVDVPSTFVGLVLENCELPFANHGHVVLGDPSPILMY 331

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy Swiss-Prot
Match: ERG11_ARATH (Squalene epoxidase 5 OS=Arabidopsis thaliana GN=SQE5 PE=2 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 5.609e-67
Identity = 111/197 (56.35%), Postives = 139/197 (70.56%), Query Frame = -1

Query:    1 LAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLEK--FQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVFY 585
            LAY+L KDGRRV VIERDL  P R+ GE + PGG L L +LGL DC++ IDAQ+  G T+YKDGKEA  SFP++   F    + R+FHNGRFVQ LR+K +SL NV LE+GTV SLIEE G++KGV YK+ +G+  TA APLT+VCDGC+SNLRRSL     ++ SY VGFI  NC L       +I++ PS  + Y
Sbjct:   60 LAYALAKDGRRVHVIERDLREPERIMGEFMQPGGRLMLSKLGLEDCLEGIDAQKATGMTVYKDGKEAVASFPVDNNNFPFDPSARSFHNGRFVQRLRQKASSLPNVRLEEGTVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLNDNNAEVLSYQVGFISKNCQLEEPEKLKLIMSKPSFTMLY 256

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy Swiss-Prot
Match: ERG12_ARATH (Squalene epoxidase 6 OS=Arabidopsis thaliana GN=SQE6 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.218e-65
Identity = 110/198 (55.56%), Postives = 137/198 (69.19%), Query Frame = -1

Query:    1 LAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLEK--FQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSP-KVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVFY 585
            LAY+L KDGRRV VIERD+  P RM GE + PGG L L +LGL DC++DIDAQ+  G  +YKDGKEA   FP++   F    + R+FHNGRFVQ LR+K  SL NV LE+GTV SL+EE G+VKGV YK++ G+  TA APLT+VCDGC+SNLRRSL      +I SY VG+I  NC L       +I++ PS  + Y
Sbjct:   60 LAYALAKDGRRVHVIERDMREPERMMGEFMQPGGRLMLSKLGLQDCLEDIDAQKATGLAVYKDGKEADAPFPVDNNNFSYEPSARSFHNGRFVQQLRRKAFSLSNVRLEEGTVKSLLEEKGVVKGVTYKNKEGEETTALAPLTVVCDGCYSNLRRSLNDDNNAEIMSYIVGYISKNCRLEEPEKLHLILSKPSFTMVY 257

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy Swiss-Prot
Match: ERG12_BRANA (Squalene monooxygenase 1,2 OS=Brassica napus GN=SQP1,2 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 6.224e-65
Identity = 108/196 (55.10%), Postives = 138/196 (70.41%), Query Frame = -1

Query:    1 LAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLE-KFQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVFY 585
            LAY+L KDGRRV VIERD+  P RM GE + PGG L L +LGL DC+++IDAQ+  G  L+KDGKE    FP++  F    +GR FHNGRFVQ LR+K +SL NV LE+GTV SLIEE G+VKGV YK+ SG+  T++APLT+VCDGC SNLRRSL     ++ +Y +G+I  NC L   +   +I+A PS  + Y
Sbjct:   63 LAYALAKDGRRVHVIERDMREPVRMMGEFMQPGGRLMLSKLGLQDCLEEIDAQKSTGIRLFKDGKETVACFPVDTNFPYEPSGRFFHNGRFVQRLRQKASSLPNVRLEEGTVRSLIEEKGVVKGVTYKNSSGEETTSFAPLTVVCDGCHSNLRRSLNDNNAEVTAYEIGYISRNCRLEQPDKLHLIMAKPSFAMLY 258

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy Swiss-Prot
Match: ERG11_BRANA (Squalene monooxygenase 1,1 OS=Brassica napus GN=SQP1,1 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 6.996e-62
Identity = 104/196 (53.06%), Postives = 135/196 (68.88%), Query Frame = -1

Query:    1 LAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLEK-FQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVFY 585
            LAY+L KDGRRV VIERD+  P RM GE + PGG L L +LGL DC++ ID Q   G  +YKDG++A VSFP +  F     GR F+NGRFVQ LR+K +SL  V LE+GTV SLIEE G++KGV YK+ +G+  TA+APLT+VCDGC+SNLRRS+     ++ SY VG++  NC L       +I++ PS  + Y
Sbjct:   62 LAYALAKDGRRVHVIERDMREPVRMMGEFMQPGGRLLLSKLGLEDCLEGIDEQIATGLAVYKDGQKALVSFPEDNDFPYEPTGRAFYNGRFVQRLRQKASSLPTVQLEEGTVKSLIEEKGVIKGVTYKNSAGEETTAFAPLTVVCDGCYSNLRRSVNDNNAEVISYQVGYVSKNCQLEDPEKLKLIMSKPSFTMLY 257

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy Swiss-Prot
Match: ERG13_ARATH (Squalene epoxidase 4 OS=Arabidopsis thaliana GN=SQE4 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 9.185e-61
Identity = 104/196 (53.06%), Postives = 129/196 (65.82%), Query Frame = -1

Query:    1 LAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLYKDGKEAHVSFPLEK-FQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKSESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVFY 585
            LAY+L KDGRRV VIERDL  P R  GE +  GG   L +LGL DC++DIDAQ      +YKDGK A + FP +K F     GR   NGR VQ LR+K ASL NV LE+GTV SLIEE G+VKGV YK+ +G+ +TA+APLT+VCDGC+SNLRRSL     ++ SY VG++  N  L   +   +I + P   V Y
Sbjct:   58 LAYALAKDGRRVHVIERDLKEPQRFMGELMQAGGRFMLAQLGLEDCLEDIDAQEAKSLAIYKDGKHATLPFPDDKSFPHEPVGRLLRNGRLVQRLRQKAASLSNVQLEEGTVKSLIEEEGVVKGVTYKNSAGEEITAFAPLTVVCDGCYSNLRRSLVDNTEEVLSYMVGYVTKNSRLEDPHSLHLIFSKPLVCVIY 253

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy Swiss-Prot
Match: ERG1_HUMAN (Squalene monooxygenase OS=Homo sapiens GN=SQLE PE=1 SV=3)

HSP 1 Score: 173.326 bits (438), Expect = 2.147e-48
Identity = 89/198 (44.95%), Postives = 126/198 (63.64%), Query Frame = -1

Query:    1 LAYSLGKDGRRVRVIERDLNAPNRMAGESLIPGGYLKLIELGLVDCVDDIDAQRLLGYTLY--KDGKEAHVSFPLEKFQSHVAGRTFHNGRFVQSLRKKVASLHNVSLEQGTVTSLIEENGIVKGVQYKS-ESGQVLTAYAPLTIVCDGCFSNLRRSLCSPKVDIPSYFVGFILTNCNLPIKNYGAIIVAHPSPIVFY 585
            LA  L +DGR+V VIERDL  P+R+ GE L PGGY  L +LGL D V+ +DAQ + GY ++  +   E  + +PL +     +GR FH+GRF+ SLRK   +  N    +G V  L+EE+ +V GVQYK  E+G +   +APLT+V DG FS  R+SL S KV + S+FVGF++ N      N+  +I+A+PSP++ Y
Sbjct:  138 LAAVLSRDGRKVTVIERDLKEPDRIVGEFLQPGGYHVLKDLGLGDTVEGLDAQVVNGYMIHDQESKSEVQIPYPLSENNQVQSGRAFHHGRFIMSLRKAAMAEPNAKFIEGVVLQLLEEDDVVMGVQYKDKETGDIKELHAPLTVVADGLFSKFRKSLVSNKVSVSSHFVGFLMKNAPQFKANHAELILANPSPVLIY 335

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2UZH9_GOSRA	1.977e-147	92.80	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2VTH6_GOSRA	7.432e-147	92.80	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2UZL8_GOSRA	1.576e-145	92.80	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2V779_GOSRA	1.137e-139	88.45	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2TQJ5_GOSRA	1.088e-137	88.45	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B0N3N7_GOSAR	5.000e-137	88.05	Squalene monooxygenase OS=Gossypium arboreum GN=F3...	[more]
A0A0D2U912_GOSRA	1.933e-129	82.87	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2VLS7_GOSRA	2.201e-129	82.87	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2VK35_GOSRA	2.250e-129	82.87	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2WAK5_GOSRA	2.396e-129	82.87	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]

Pages

BLAST of g.arboreum_cottongen_reftransV1_0001666 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 17


Match Name	E-value	Identity	Description
ERG16_ARATH	2.395e-94	68.21	Squalene epoxidase 3 OS=Arabidopsis thaliana GN=SQ...	[more]
ERG1_PANGI	5.592e-91	69.23	Squalene monooxygenase OS=Panax ginseng PE=2 SV=1	[more]
ERG14_ARATH	5.347e-89	64.62	Squalene epoxidase 1 OS=Arabidopsis thaliana GN=SQ...	[more]
ERG15_ARATH	9.754e-88	64.10	Squalene epoxidase 2, mitochondrial OS=Arabidopsis...	[more]
ERG11_ARATH	5.609e-67	56.35	Squalene epoxidase 5 OS=Arabidopsis thaliana GN=SQ...	[more]
ERG12_ARATH	1.218e-65	55.56	Squalene epoxidase 6 OS=Arabidopsis thaliana GN=SQ...	[more]
ERG12_BRANA	6.224e-65	55.10	Squalene monooxygenase 1,2 OS=Brassica napus GN=SQ...	[more]
ERG11_BRANA	6.996e-62	53.06	Squalene monooxygenase 1,1 OS=Brassica napus GN=SQ...	[more]
ERG13_ARATH	9.185e-61	53.06	Squalene epoxidase 4 OS=Arabidopsis thaliana GN=SQ...	[more]
ERG1_HUMAN	2.147e-48	44.95	Squalene monooxygenase OS=Homo sapiens GN=SQLE PE=...	[more]

Pages

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00420	RNGMNOXGNASE	coord: 41..63 score: 39.28 coord: 190..205 score: 31.25
None	No IPR available	PANTHER	PTHR10835	SQUALENE MONOOXYGENASE	coord: 4..248
None	No IPR available	PANTHER	PTHR10835:SF1	SQUALENE EPOXIDASE 2, MITOCHONDRIAL-RELATED	coord: 4..248
IPR006076	FAD dependent oxidoreductase	PFAM	PF01266	DAO	coord: 41..73 e-value: 1.2E-5 score: 25.0
IPR013698	Squalene epoxidase	PFAM	PF08491	SE	coord: 191..248 e-value: 3.8E-19 score: 68.7
IPR023753	FAD/NAD(P)-binding domain	GENE3D	3.50.50.60		coord: 40..207 e-value: 4.3E-20 score: 71.6
IPR023753	FAD/NAD(P)-binding domain	SUPERFAMILY	51905	FAD/NAD(P)-binding domain	coord: 41..211

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0001666 ID=g.arboreum_cottongen_reftransV1_0001666; Name=g.arboreum_cottongen_reftransV1_0001666; organism=Gossypium arboreum; type=contig; length=750bp
ATAAAATACGATTGGTGAAGGGTGTGCTACTATAATAGCTCCATAATTTT
TAATTGGTAGGTTACAGTTCGTCAGTATAAAACCAACAAAATAAGAGGGT
ATATCAACCTTAGGAGAGCAAAGAGAGCGTCTCAAATTTGAGAAACAACC
ATCGCATACAATTGTGAGAGGAGCGTAAGCTGTCAACACTTGACCACTCT
CACTTTTGTACTGCACTCCTTTGACAATACCATTTTCTTCAATCAGAGAT
GTAACTGTCCCTTGTTCTAAACTTACGTTGTGAAGAGATGCAACTTTTTT
CCGCAAGCTTTGAACGAAACGACCATTATGAAATGTTCTTCCTGCAACAT
GAGATTGAAACTTTTCTAAAGGAAAAGATACGTGAGCCTCCTTTCCATCC
TTGTATAGAGTATAACCCAAAAGTCGTTGCGCATCAATATCATCTACACA
ATCCACGAGGCCTAATTCAATTAACTTTAAGTAGCCCCCTGGTATTAGAC
TTTCACCAGCCATTCTATTAGGCGCATTTAAGTCCCTTTCTATCACTCGT
ACTCGACGTCCATCCTTTCCAAGAGAATAGGCAAGAGCAGCACCGGCAAC
ACCGGCGCCGACTATGATAATATCCGCAGTGCCAACACCCTCACTTCCAG
TTTTGTTTACACTGTTTTTCTTTGGAAACTCCATTGAAGCTACTCTGTTT
AGCTTCCTCTGTCCCCCAAATCTGATTAGGGAATTGCAGTACAAGAAAAC

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR006076	FAD-dep_OxRdtase
IPR013698	Squalene_epoxidase
IPR023753	FAD/NAD-binding_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	obsolete oxidation-reduction process

Vocabulary: **Molecular Function**
Term	Definition
GO:0016491	oxidoreductase activity
GO:0050660	flavin adenine dinucleotide binding
GO:0004506	squalene monooxygenase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral to membrane

Search form

g.arboreum_cottongen_reftransV1_0001666, g.arboreum_cottongen_reftransV1_0001666 (contig) Gossypium arboreum

Pages

Pages