g.arboreum_cottongen_reftransV1_0003394, g.arboreum_cottongen_reftransV1_0003394 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0003394
Unique Name	g.arboreum_cottongen_reftransV1_0003394
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	1293

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr6	chromosome	g.arboreum_cottongen_reftransV1_0003394:1..1293 . Chr6:20222490..20223894 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

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BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy TrEMBL
Match: A0A0D2PVP2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G157300 PE=4 SV=1)

HSP 1 Score: 541.576 bits (1394), Expect = 0.000e+0
Identity = 291/298 (97.65%), Postives = 292/298 (97.99%), Query Frame = 1

Query:   34 MEPXXXXXXXXXXXNHHPQEVPTCLTPQKAENNKPAEIKNLQIMIASKDDNKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPXXXXXXXXXXXXXQGNSVSAGLHTKMGLGACTGSKDRNNWAMLGGNLGRSQIPSGAWSSSNGIGSGLVQASEQSTSASNFGNENSNHIHQNYGFQGLEFPNINMGFVSFSSLLNGSNPQVPGLELGLSQDPHFGVSNSQAFSHFYPQIGQQRGGVRPLNQQQIVTDKDNSQGSKQ 927
            MEPKGK KGKGKGSNHHPQEVPTCLTPQKAENNKPAEIKNLQIMIASKDDNKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPASALAAAGASVCAQGNSVSAGLHTKMGLGACTGSKDRNNWAMLGGNLGRSQIPSGAWSSSNGIGSGLVQ SEQSTSASNFGNENSNHIH NYGFQGLEFPN+NMGFVSFSSLLNGSN QVPGLELGLSQDPHFGVSNSQAFSHFY QIGQQRGGVRPLNQQQIV DKDNSQGSKQ
Sbjct:    1 MEPKGKGKGKGKGSNHHPQEVPTCLTPQKAENNKPAEIKNLQIMIASKDDNKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPASALAAAGASVCAQGNSVSAGLHTKMGLGACTGSKDRNNWAMLGGNLGRSQIPSGAWSSSNGIGSGLVQVSEQSTSASNFGNENSNHIHHNYGFQGLEFPNMNMGFVSFSSLLNGSNLQVPGLELGLSQDPHFGVSNSQAFSHFYQQIGQQRGGVRPLNQQQIVADKDNSQGSKQ 298

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BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy TrEMBL
Match: A0A0B0NCD0_GOSAR (Transcription factor TCP20-like protein OS=Gossypium arboreum GN=F383_16179 PE=4 SV=1)

HSP 1 Score: 533.487 bits (1373), Expect = 0.000e+0
Identity = 300/357 (84.03%), Postives = 307/357 (85.99%), Query Frame = 1

Query:   34 MEPXXXXXXXXXXXNHHPQEVPTCLTPQKAENNKPAEIKNLQIMIASKDDNKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPXXXXXXXXXXXXXQGNSVSAGLHTKMGLGACTGSKDRNNWAMLGGNLGRSQIPSGAWSSSNGIGSGLVQASEQSTSASNFGNENSNHIHQNYGFQGLEFPNINMGFVSFSSLLNGSNPQVPGLELGLSQDPHFGVSNSQAFSHFYPQIGQQRGGVRPLNQQQIVTDKDNSQGSKQ*LVFLNNNKMMTTTGQPDYILRSLTRN*R*NDF*TVQFAGMSCEENNNGQEIGFTSAAC 1104
            MEPKGKSKGKGKGSNHHPQEVPTCLTPQKAENNKPAEIKNLQIMIASKDDNKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPASALAAAGASVCAQGNSVSAGLHTKMGLGACTGSKDRNNWAMLGGNLGRSQIPSGAWSSSNGIGSGLVQASEQSTSASNFGNENSNHIHQNYGFQGLEFPNINMGFVSFSSLLNGSNPQVPGLELGLSQDPHFGVSNSQAFSHFYPQIGQQRG     +  +   D D+   ++  + FL+                              Q   MSCEENNNGQEIGFTSAAC
Sbjct:    1 MEPKGKSKGKGKGSNHHPQEVPTCLTPQKAENNKPAEIKNLQIMIASKDDNKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPASALAAAGASVCAQGNSVSAGLHTKMGLGACTGSKDRNNWAMLGGNLGRSQIPSGAWSSSNGIGSGLVQASEQSTSASNFGNENSNHIHQNYGFQGLEFPNINMGFVSFSSLLNGSNPQVPGLELGLSQDPHFGVSNSQAFSHFYPQIGQQRGIQAVASLSKQQQDDDDDWSTRLYIAFLD------------------------------QKLKMSCEENNNGQEIGFTSAAC 327

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BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy TrEMBL
Match: A0A061E406_THECC (Teosinte branched 1 isoform 1 OS=Theobroma cacao GN=TCM_008601 PE=4 SV=1)

HSP 1 Score: 443.351 bits (1139), Expect = 2.923e-151
Identity = 236/289 (81.66%), Postives = 253/289 (87.54%), Query Frame = 1

Query:   76 NHHPQEVPTCLTPQK----AENNKPAEIKNLQIMIASKDDNKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPXXXXXXXXXXXXXQGNSVSAGLHTKM-GLGACTGSKDRNNWAMLGGNLGRSQIPSGAWSSSNGIGSGLVQASEQSTSASNFGNENSNHIHQNYGFQGLEFPNINMGFVSFSSLLNGSNPQVPGLELGLSQDPHFGVSNSQAFSHFYPQIGQQRGGVRPLNQQQIVTDKDNSQGSKQ 927
            NHHPQEVPT L P +    AENNKPAEIKN QIMIASKDDNKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQ+EPSIIAATGTGTIPASALAAAG SV  QGNSV AGLHTK+ GLG+  GS+DRNNW+M+ GN+ RS IPSGAW S NGI SG  Q S Q TSASNFG+ENSN+I + YGF GLEFP++NMGFVSFSSLLNGSN QVPGLELGLSQDPHFGV NSQAFS FY Q+GQQRGGV  LNQQQ ++DKD+SQGSKQ
Sbjct:    7 NHHPQEVPTFLIPPQKANMAENNKPAEIKNFQIMIASKDDNKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGTSVSEQGNSVPAGLHTKIEGLGSGIGSRDRNNWSMMSGNIERSHIPSGAWPSINGIASGFAQGSGQLTSASNFGSENSNNIPK-YGFHGLEFPHMNMGFVSFSSLLNGSNQQVPGLELGLSQDPHFGVLNSQAFSQFYQQMGQQRGGVGSLNQQQQLSDKDDSQGSKQ 294

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BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy TrEMBL
Match: A0A067H2M9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023883mg PE=4 SV=1)

HSP 1 Score: 353.214 bits (905), Expect = 2.908e-116
Identity = 194/273 (71.06%), Postives = 219/273 (80.22%), Query Frame = 1

Query:  121 AENNKPAEIKNLQIMIASKDDNKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPXXXXXXXXXXXXXQGNSVSAGLHTKM-GLGACTGSKDRNNWAMLGGNLGRSQIPSGAWSSSNGIGSGLVQASEQSTSASNFGNEN-SNHIHQNYGFQGLEFPNINMGFVSFSSLLNGSNPQVPGLELGLSQDPHFGVSNSQAFSHFYPQIGQQRGGVRPLN----QQQIVTDKDNSQGS 921
            AENNKP EIK+ QIMIA+KDD+ K+LAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQ+EPSIIAATGTGTIPAS LAAAGASV  QGNSVSAGLHTK+ GLG   GS +R NW M+  N GRSQIPSG W + NG GSG +Q S Q T  SNFG+EN S   +  +GF G+EFPN+NMG +SFSS+L+G++ Q+PGLELGLSQD H GV NSQA S FY Q+G  R     LN     QQ ++DKD+SQGS
Sbjct:    2 AENNKPGEIKDFQIMIANKDDSTKKLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASMLAAAGASVSEQGNSVSAGLHTKIEGLGPGVGSINRANWTMMSANFGRSQIPSGVWPTINGTGSGFIQNSGQLT--SNFGSENLSLSANPKFGFHGIEFPNMNMGLMSFSSMLSGASHQIPGLELGLSQDAHVGVMNSQAISQFYQQMGHHRSASGSLNQQHQHQQQISDKDDSQGS 272

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BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy TrEMBL
Match: V4VFG8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032374mg PE=4 SV=1)

HSP 1 Score: 351.288 bits (900), Expect = 1.912e-115
Identity = 192/272 (70.59%), Postives = 218/272 (80.15%), Query Frame = 1

Query:  121 AENNKPAEIKNLQIMIASKDDNKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPXXXXXXXXXXXXXQGNSVSAGLHTKM-GLGACTGSKDRNNWAMLGGNLGRSQIPSGAWSSSNGIGSGLVQASEQSTSASNFGNENSNHIHQNYGFQGLEFPNINMGFVSFSSLLNGSNPQVPGLELGLSQDPHFGVSNSQAFSHFYPQIGQQRGGVRPLN----QQQIVTDKDNSQGS 921
            AENNKP EIK+ QIMIA+KDD+ K+LAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQ+EPSIIAATGTGTIPAS LAAAGASV  QGNSVSAGLH K+ GLG   GS +R NW M+  N GRSQIPSG W + NG GSG +Q S Q T  SNFG+EN +  +  +GF G+EFPN+NMG +SFSS+L+G++ Q+PGLELGLSQD H GV NSQA S FY Q+G  R     LN     QQ ++DKD+SQGS
Sbjct:    2 AENNKPGEIKDFQIMIANKDDSTKKLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASMLAAAGASVSEQGNSVSAGLHAKIEGLGPGVGSINRANWTMMSANFGRSQIPSGVWPTINGTGSGFIQNSGQLT--SNFGSENLS-ANPKFGFHGIEFPNMNMGLMSFSSMLSGASHQIPGLELGLSQDAHVGVMNSQAISQFYQQMGHHRSASGSLNQQHQHQQQISDKDDSQGS 270

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BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy TrEMBL
Match: B9RMA7_RICCO (Transcription factor, putative OS=Ricinus communis GN=RCOM_1078980 PE=4 SV=1)

HSP 1 Score: 350.132 bits (897), Expect = 1.424e-114
Identity = 201/298 (67.45%), Postives = 230/298 (77.18%), Query Frame = 1

Query:   76 NHHPQEVPTCLTPQKAE--------NNKPAEIKNLQIMIASKDDNKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPXXXXXXXXXXXXXQGNSVSAGLHTKM-GLGACTGSKDRNNWAMLGGNLGRSQIPSGAW-SSSNGIGSGLVQASEQSTSASNFGNENSNHIHQNYGFQGLEFPNINMGFVSFSSLLNGSNPQVPGLELGLSQDPHFGVSNSQAFSHFYPQIGQQRGGVRPLNQQQIVT----DKDNSQGSKQ 927
            N H Q++PT L P + E        ++K AEIK+ QIMIA+KDDNKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQ+EPSIIAATGTGTIPASALAAAGASV  QGNSVSAGLH+KM G+G   GS+DR NW M+  NLGR  + +G W SS  GIG+G +  S Q  SA NFGNE++N + + +GF G+E PNINMG +SF S+ N +N QVPGLELGLSQD H GV NSQA S FY Q+GQ R G+  L QQQ       DKD+SQGS+Q
Sbjct:    8 NPHKQDLPTFLNPLQKETMAENSSSSSKTAEIKDFQIMIANKDDNKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGASVSQQGNSVSAGLHSKMEGIGPSVGSRDRANWTMMNSNLGRCNVTNGMWPSSVGGIGAGYISNSSQ--SAMNFGNESANALPK-FGFHGVELPNINMGLMSFYSMFNATNQQVPGLELGLSQDGHTGVMNSQALSQFYQQMGQNRTGLNSLVQQQQHQQQPPDKDDSQGSRQ 302

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BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy TrEMBL
Match: A0A067K4V4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18002 PE=4 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 2.746e-107
Identity = 191/279 (68.46%), Postives = 216/279 (77.42%), Query Frame = 1

Query:  121 AENNKPAEIKNLQIMIASKDD-NKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPXXXXXXXXXXXXXQGNSVSAGLHTKM-GLGACTGSKDRNNWAMLGGNLGRSQIPSGAWSSSNGIGSGLVQASEQSTSASNFGNENSNHIHQNYGFQGLEFPNINMGFVSFSSLLNGSNPQVPGLELGLSQDPHFGVSNSQAFSHFYPQIGQQR-GGVRPLNQQQIVT-------DKDNSQGSKQ 927
            AENNKP+EIK+ QIMI++KDD NKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQ+EPSIIAATGTGTIPASALAAAGASV  Q NSVS GL TKM GLG   GS++R NW M+  NLGRS + +  W S  GIG+G +  S Q  SA+NFGNE+S      +GF G+EFPNINMG +S  S+ +G+N Q PGLELGLSQD + GV NSQA S FY Q+GQ R  G+   NQQQ          DKD+SQGS+Q
Sbjct:    2 AENNKPSEIKDFQIMISNKDDSNKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGASVSQQENSVSTGLQTKMEGLGQTIGSRERANWTMMTSNLGRSNLSAAVWPSVGGIGTGFISNSGQ--SATNFGNESS-----KFGFHGIEFPNINMGLMSVYSMFSGANQQFPGLELGLSQDGNIGVLNSQALSQFYQQMGQSRPAGLNSFNQQQQQQQQEEQPPDKDDSQGSRQ 273

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BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy TrEMBL
Match: B9GZD6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s16630g PE=4 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 3.574e-103
Identity = 188/286 (65.73%), Postives = 218/286 (76.22%), Query Frame = 1

Query:   85 PQEVPTCLTPQKAENNKPAEIKNLQIMIASKDDNKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPXXXXXXXXXXXXXQGNSVSAGLHTKM-GLG-ACTGSKDRNNWAMLGGNLGRSQIPSGAWSSSNGIGSGLVQASEQSTSASNFGNENSNHIHQNYGFQGLEFPNINMGFVSFSSLLNGSNPQVPGLELGLSQDPHFGVSNSQAFSHFYPQIGQQRGGVRPLN---QQQIVTDKDNSQGSKQ 927
            PQE         + NNKPA+I++ Q M+A KDD+KK+LAPKRSSNKDRHKKV+GRGRRIR+PALCAARIFQLTREL HKSDGETIQWLLQQ+EPSIIAATGTGTIPASALAAAGASV  QG SVS GLH KM GLG   TGS+DRN+W +    LG S + +G W S  GIG G V  S QST  SNFGNENS+ + + YGFQG+EFPNINMG +SF S+ +G+N Q+PGLELGLSQD H  + N QA S FY Q+ Q RG +  LN   QQ+   DKD+SQGS+Q
Sbjct:   20 PQEASMSENNINSNNNKPADIEDFQNMMADKDDSKKKLAPKRSSNKDRHKKVEGRGRRIRIPALCAARIFQLTRELEHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGASVSEQGGSVSTGLHAKMEGLGPGVTGSRDRNDWTLSNTKLGISNVATGVWPSVGGIGLGFVPNSGQST--SNFGNENSSTLPK-YGFQGVEFPNINMGLMSFYSMFSGTNQQLPGLELGLSQDGHSAMLNPQALSPFYHQMVQGRGVLDSLNQEKQQEQPPDKDDSQGSRQ 302

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BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy TrEMBL
Match: A0A059D9A1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03529 PE=4 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 3.320e-93
Identity = 165/275 (60.00%), Postives = 204/275 (74.18%), Query Frame = 1

Query:  115 QKAENNKPAEIKNLQIMIASKDDNKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPXXXXXXXXXXXXXQGNSVSAGLHTKMGLGACTGSKDRNNWAMLGGNLGRSQIPSGAWSSSNGIGSGLVQASEQSTSA-SNFGNENSNHIHQNYGFQGLEFPNINMGFVSFSSLLNGSNPQVPGLELGLSQDPHFGVSNSQ-AFSHFYPQIGQQRGG--VRPLNQQQIVTDKDNSQGSKQ 927
            Q  +   P+EIK+ QI+IASKD++KKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHK+DGETIQWLLQQ+EPSI+AATGTGT+PASAL AAG+SV  QG+SVSA +    G+G   G   R N A+  GN  RSQ+ SG W   +GI  GLV   +QS +  +N G E+SN++ + +GFQG+EFPN+N+G +SF + L+GSN ++PGLELGLSQD H GV NS  + S  + Q+GQ  GG  V   + QQ  T  D   GS++
Sbjct:   10 QHQKEKNPSEIKDFQIVIASKDESKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKTDGETIQWLLQQAEPSIVAATGTGTVPASALNAAGSSVSEQGSSVSAKMEGLAGVGPLLGFGGRTNLAISNGNFSRSQVVSGVWPPVSGIRPGLVHYPDQSAAVGANIGGESSNYVSK-FGFQGVEFPNMNVGLISFPTFLSGSNQRMPGLELGLSQDGHGGVLNSHSSLSQIFQQMGQSGGGETVSVGHHQQQQTPDDEGDGSQE 283

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BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy TrEMBL
Match: F6H463_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0068g01690 PE=4 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 6.491e-92
Identity = 166/265 (62.64%), Postives = 193/265 (72.83%), Query Frame = 1

Query:   82 HPQEVPTCLT---PQKAENNKPAEIKNLQIMIASKDDNKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPXXXXXXXXXXXXXQGNSVSAGLHTK---MGLGACTGSKDRNNWAMLGGNLGRSQIPSGAWSSSNGIGSGLVQASEQSTSASNFGNENSNHIHQNYGFQGLEFPNINMGFVSFSSLLNGSNPQVPGLELGLSQDPHFGVSNSQAFSHFYPQIGQQR 858
             PQEVP  L+   P   EN KPAE+K+ QI+IA K++ KKQLAPKRSSNKDRH KV+GRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQ+EPSIIAATGTGTIPASALAAAG SV  QG S+SAGLH K   +G  +      R +WAM+G NLGR  + +G W   +G G      S    S +N GNE+SN++ Q   F G + P  N+G +SF+S+L GSN Q+PGLELGLSQD H GV NSQA S  Y Q+GQ R
Sbjct:    8 QPQEVPNFLSLPQPNMGEN-KPAEVKDFQIVIADKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGGSVSQQGTSISAGLHQKIDELGGSSIGSGSSRTSWAMVGANLGRPHVATGLWPPVSGFGF----QSSSGPSTTNLGNESSNYL-QKIAFPGFDLPATNLGPMSFTSILGGSNQQLPGLELGLSQDGHIGVLNSQALSQIYQQMGQAR 266

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: TCP20_ARATH (Transcription factor TCP20 OS=Arabidopsis thaliana GN=TCP20 PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.497e-65
Identity = 133/249 (53.41%), Postives = 166/249 (66.67%), Query Frame = 1

Query:  124 ENNKPA-EIKNLQIMIASKDD-------NKKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPXXXXXXXXXXXX-XQGNSVSAGLHTKMGLGACTGSKDRN-NWAMLGGN-LGRSQIPSGAWSSSNGIGSGLVQASEQSTSASNFGNENSNHIHQNYGFQGLEFPNINMGFVSFSSLLNGSNPQVPGLELGLSQDPHFGVSNSQAFSHFY 837
            EN KP  EIK+ QI++++ D        N+ QL PKRSSNKDRH KV+GRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQ+EPSIIAATG+GTIPASALA++ A+    QG S++AGL     L   + S  R  NW + GG  + RS +P+G W +  G GSG+      S  A               GF G +FP +  G +SF+S+L G++ Q+PGLELGLSQ+ + GV N Q+F+  Y
Sbjct:   39 ENRKPTTEIKDFQIVVSASDKEPNKKSQNQNQLGPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALASSAATSNHHQGGSLTAGLMISHDLDGGSSSSGRPLNWGIGGGEGVSRSSLPTGLWPNVAGFGSGVPTTGLMSEGAG-----------YRIGFPGFDFPGV--GHMSFASILGGNHNQMPGLELGLSQEGNVGVLNPQSFTQIY 274

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: TCP15_ARATH (Transcription factor TCP15 OS=Arabidopsis thaliana GN=TCP15 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.340e-34
Identity = 61/85 (71.76%), Postives = 73/85 (85.88%), Query Frame = 1

Query:  154 LQIMIASKDDNK--KQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIP 402
            L I+  + + N   K+  PKR+S KDRH KV+GRGRRIRMPA+CAAR+FQLTRELGHKSDGETI+WLLQQ+EP++IAATGTGTIP
Sbjct:   29 LAIISTTSEPNSEPKKPPPKRTSTKDRHTKVEGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIP 113

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: TCP14_ARATH (Transcription factor TCP14 OS=Arabidopsis thaliana GN=TCP14 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.983e-33
Identity = 59/66 (89.39%), Postives = 64/66 (96.97%), Query Frame = 1

Query:  205 KRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIP 402
            KR+S KDRH KVDGRGRRIRMPALCAAR+FQLTRELGHKSDGETI+WLLQQ+EPS+IAATGTGTIP
Sbjct:  113 KRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIP 178

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: TCP8_ARATH (Transcription factor TCP8 OS=Arabidopsis thaliana GN=TCP8 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.070e-31
Identity = 56/65 (86.15%), Postives = 62/65 (95.38%), Query Frame = 1

Query:  208 RSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIP 402
            + S KDRH KVDGRGRRIRMPALCAAR+FQLTRELGHKSDGETI+WLLQQ+EP+I+AATGTGTIP
Sbjct:   57 KRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIP 121

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: TCP9_ARATH (Transcription factor TCP9 OS=Arabidopsis thaliana GN=TCP9 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.049e-31
Identity = 55/66 (83.33%), Postives = 62/66 (93.94%), Query Frame = 1

Query:  205 KRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIP 402
            KR+S KDRH KV+GRGRRIRMPA CAARIFQLTRELGHKSDGETI+WLL+ +EP+IIAATGTGT+P
Sbjct:   71 KRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAATGTGTVP 136

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: TCP19_ARATH (Transcription factor TCP19 OS=Arabidopsis thaliana GN=TCP19 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.642e-31
Identity = 57/86 (66.28%), Postives = 72/86 (83.72%), Query Frame = 1

Query:  160 IMIASKDDN-----KKQLAPKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIP 402
            +M+  ++D      K + APKR ++KDRH KV+GRGRRIRMPA CAAR+FQLTRELGHKSDGETI+WLL+++EP+II ATGTGT+P
Sbjct:   33 MMLMKQEDGYLQPVKTKPAPKRPTSKDRHTKVEGRGRRIRMPAGCAARVFQLTRELGHKSDGETIRWLLERAEPAIIEATGTGTVP 118

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: TCP21_ARATH (Transcription factor TCP21 OS=Arabidopsis thaliana GN=TCP21 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.749e-31
Identity = 58/81 (71.60%), Postives = 68/81 (83.95%), Query Frame = 1

Query:  163 MIASKDDNKKQL-APKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIP 402
            +I  +  NK  L A K+  +KDRH KVDGRGRRIRMP +CAAR+FQLTRELGHKSDG+TI+WLL+Q+EPSIIAATGTGT P
Sbjct:   12 IIVEQTSNKGPLNAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTP 92

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: TCP22_ARATH (Transcription factor TCP22 OS=Arabidopsis thaliana GN=TCP22 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 8.982e-31
Identity = 54/65 (83.08%), Postives = 61/65 (93.85%), Query Frame = 1

Query:  208 RSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIP 402
            +   KDRH KVDGRGRRIRMPA+CAAR+FQLTRELGHKSDGETI+WLLQQ+EP+IIA+TGTGTIP
Sbjct:   60 KKPTKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIP 124

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: PCF2_ORYSJ (Transcription factor PCF2 OS=Oryza sativa subsp. japonica GN=PCF2 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.019e-30
Identity = 55/62 (88.71%), Postives = 60/62 (96.77%), Query Frame = 1

Query:  217 NKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIP 402
            N+DRH KV+GRGRRIRMPA CAARIFQLTRELGHKSDGETI+WLLQQSEP+IIAATGTGT+P
Sbjct:   75 NRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGTVP 136

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Match: PCF2_ORYSI (Transcription factor PCF2 OS=Oryza sativa subsp. indica GN=PCF2 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.019e-30
Identity = 55/62 (88.71%), Postives = 60/62 (96.77%), Query Frame = 1

Query:  217 NKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIP 402
            N+DRH KV+GRGRRIRMPA CAARIFQLTRELGHKSDGETI+WLLQQSEP+IIAATGTGT+P
Sbjct:   75 NRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGTVP 136

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2PVP2_GOSRA	0.000e+0	97.65	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B0NCD0_GOSAR	0.000e+0	84.03	Transcription factor TCP20-like protein OS=Gossypi...	[more]
A0A061E406_THECC	2.923e-151	81.66	Teosinte branched 1 isoform 1 OS=Theobroma cacao G...	[more]
A0A067H2M9_CITSI	2.908e-116	71.06	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
V4VFG8_9ROSI	1.912e-115	70.59	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
B9RMA7_RICCO	1.424e-114	67.45	Transcription factor, putative OS=Ricinus communis...	[more]
A0A067K4V4_JATCU	2.746e-107	68.46	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
B9GZD6_POPTR	3.574e-103	65.73	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
A0A059D9A1_EUCGR	3.320e-93	60.00	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]
F6H463_VITVI	6.491e-92	62.64	Putative uncharacterized protein OS=Vitis vinifera...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0003394 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 17


Match Name	E-value	Identity	Description
TCP20_ARATH	3.497e-65	53.41	Transcription factor TCP20 OS=Arabidopsis thaliana...	[more]
TCP15_ARATH	5.340e-34	71.76	Transcription factor TCP15 OS=Arabidopsis thaliana...	[more]
TCP14_ARATH	5.983e-33	89.39	Transcription factor TCP14 OS=Arabidopsis thaliana...	[more]
TCP8_ARATH	1.070e-31	86.15	Transcription factor TCP8 OS=Arabidopsis thaliana ...	[more]
TCP9_ARATH	2.049e-31	83.33	Transcription factor TCP9 OS=Arabidopsis thaliana ...	[more]
TCP19_ARATH	3.642e-31	66.28	Transcription factor TCP19 OS=Arabidopsis thaliana...	[more]
TCP21_ARATH	7.749e-31	71.60	Transcription factor TCP21 OS=Arabidopsis thaliana...	[more]
TCP22_ARATH	8.982e-31	83.08	Transcription factor TCP22 OS=Arabidopsis thaliana...	[more]
PCF2_ORYSJ	2.019e-30	88.71	Transcription factor PCF2 OS=Oryza sativa subsp. j...	[more]
PCF2_ORYSI	2.019e-30	88.71	Transcription factor PCF2 OS=Oryza sativa subsp. i...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005333	Transcription factor, TCP	PFAM	PF03634	TCP	coord: 61..177 e-value: 7.6E-31 score: 107.6
None	No IPR available	PANTHER	PTHR31072:SF4	TRANSCRIPTION FACTOR TCP20-RELATED	coord: 28..149
None	No IPR available	PANTHER	PTHR31072	FAMILY NOT NAMED	coord: 28..149
IPR017887	Transcription factor TCP subgroup	PROSITE	PS51369	TCP	coord: 62..116 score: 27.613

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0003394 ID=g.arboreum_cottongen_reftransV1_0003394; Name=g.arboreum_cottongen_reftransV1_0003394; organism=Gossypium arboreum; type=contig; length=1293bp
CGCCAATCAAGGAGGCCCCATAATTGAGTTTACATGGAGCCTAAGGGCAA
GAGCAAGGGCAAGGGCAAGGGCTCAAATCATCATCCACAAGAGGTGCCCA
CCTGCTTGACTCCTCAGAAAGCAGAGAACAATAAACCTGCAGAAATAAAA
AACTTGCAAATCATGATTGCGAGCAAAGATGATAACAAGAAGCAACTAGC
TCCCAAAAGAAGCTCAAACAAAGACAGGCACAAGAAAGTAGATGGCAGAG
GTAGAAGAATAAGGATGCCTGCTCTGTGCGCCGCCAGGATTTTCCAATTG
ACCCGAGAATTGGGTCACAAATCCGATGGCGAGACCATTCAGTGGTTGTT
GCAGCAATCGGAACCATCTATCATTGCTGCAACTGGAACTGGGACGATTC
CCGCTTCAGCTCTGGCGGCTGCTGGAGCCTCTGTTTGTGCGCAGGGGAAC
TCTGTCTCTGCTGGTTTGCATACCAAAATGGGACTGGGGGCATGTACTGG
GTCCAAAGATAGGAATAATTGGGCAATGTTGGGTGGTAATTTAGGAAGAT
CCCAAATCCCAAGTGGGGCATGGTCTTCTAGTAATGGAATTGGATCAGGG
CTTGTTCAAGCTTCAGAGCAATCCACATCAGCTTCAAATTTTGGGAATGA
AAACTCAAATCATATCCACCAAAACTATGGGTTCCAGGGGCTTGAATTTC
CAAATATTAATATGGGTTTTGTGAGTTTTTCGTCGCTGCTCAACGGTAGT
AACCCCCAGGTTCCAGGTTTGGAGCTTGGGCTTTCACAGGATCCGCATTT
TGGTGTGTCTAATTCCCAAGCTTTTAGCCACTTTTACCCGCAGATTGGGC
AGCAGCGAGGTGGTGTACGTCCCTTGAATCAGCAGCAGATTGTTACTGAT
AAGGATAATTCCCAGGGATCCAAGCAGTAGCTAGTCTTTCTAAACAACAA
CAAGATGATGACGACGACTGGTCAACCCGATTATATATTGCGTTCCTTGA
CCAGAAACTAAAGGTAAAATGATTTCTGAACAGTTCAATTTGCTGGGATG
AGTTGTGAAGAGAATAACAATGGCCAGGAAATTGGATTTACTTCTGCTGC
TTGTTAAACATTGATGGATTTAGTTTGGTGTTTGTTAAACTGAACTTTGA
GGTGTGTTTATTATTGTTTAGTACAATTTTGTCGGGCAAATATCACTTGT
TTGCTCTATATTTCATGTCTAAGCGAAGTAGATTGGTATCTTAAAGCAAT
AGAGATGAGGGGGATTTCCATTGTTTTCAACTTTAAAGTAGCG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR005333	Transcription_factor_TCP
IPR017887	TF_TCP_subgr

Search form

g.arboreum_cottongen_reftransV1_0003394, g.arboreum_cottongen_reftransV1_0003394 (contig) Gossypium arboreum

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