g.arboreum_cottongen_reftransV1_0016052, g.arboreum_cottongen_reftransV1_0016052 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0016052
Unique Nameg.arboreum_cottongen_reftransV1_0016052
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length544
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr3chromosomeg.arboreum_cottongen_reftransV1_0016052:1..544 .
Chr3:88985090..88985633 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: A0A061GX17_THECC (Zinc finger family protein OS=Theobroma cacao GN=TCM_042086 PE=4 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 1.200e-104
Identity = 160/183 (87.43%), Postives = 166/183 (90.71%), Query Frame = -3
Query:    3 NPADWPRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPHPSGG---RNETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542
            +P DWPRDDAW TVVRRLPSPRLD TRQISSLFH SEPGTFDDDEVLD Q ETTEENVFA D  K NSIG+IEVKTYPEVSA+PRATCHNNFAILIHLKAPH SGG   RN+T+  PT QNSRAPVDLVTVLDVSGSMAGTK+ALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE
Sbjct:  183 SPVDWPRDDAWLTVVRRLPSPRLDSTRQISSLFHASEPGTFDDDEVLDQQVETTEENVFAKDITKINSIGAIEVKTYPEVSAVPRATCHNNFAILIHLKAPHASGGQNSRNQTVIPPTNQNSRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 365          
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: A0A0B0PPX6_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_00607 PE=4 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 3.052e-98
Identity = 152/183 (83.06%), Postives = 162/183 (88.52%), Query Frame = -3
Query:    3 NPADWPRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPHPSGG---RNETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542
            NPADWPRDDAW   VRRLPSPRLD TR +SSLF  SEPGTFDDDEVLD Q E  ++NVF  DA+KNNSIG IEVKTYPEVSA+PRA  HNNFAILIHLKAPH SGG   R++T+FSP+TQNSRAPVDLVTVLDVSGSMAGTK+ALLKRAMGFVIQHLG SDRLSVIAFSSTARRLFPLRRMTE
Sbjct:  155 NPADWPRDDAW--AVRRLPSPRLDSTRHVSSLFQVSEPGTFDDDEVLDQQQENPQQNVFEKDASKNNSIGGIEVKTYPEVSAVPRANSHNNFAILIHLKAPHTSGGLNSRDQTIFSPSTQNSRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQHLGSSDRLSVIAFSSTARRLFPLRRMTE 335          
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: F6GU18_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g02630 PE=4 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 4.500e-81
Identity = 133/184 (72.28%), Postives = 148/184 (80.43%), Query Frame = -3
Query:    3 NPADWPRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPHPSG----GRNETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542
            NP DW  DDAW TV+R+LPSPR D +R ISSLFH  EP  FDDDEVLD Q E+TE +    D   NNSIG+IEVKTYPEVSA+PR+T HNNF +LIHLKAP  SG    G N+T   PT+Q+ RAPVDLVTVLDVSGSMAGTK+ALLKRAMGFVIQ LGP DRLSVI+FSSTARRLFPLRRMT+
Sbjct:  152 NPVDWGHDDAWMTVLRQLPSPRQDASRHISSLFHAHEPAVFDDDEVLDHQPESTERSSSTRDI-DNNSIGAIEVKTYPEVSAVPRSTSHNNFTVLIHLKAPLTSGRQNSGTNQTNMQPTSQSCRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQSLGPCDRLSVISFSSTARRLFPLRRMTD 334          
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: A5BI34_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037547 PE=4 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 3.280e-79
Identity = 133/184 (72.28%), Postives = 148/184 (80.43%), Query Frame = -3
Query:    3 NPADWPRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPHPSG----GRNETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542
            NP DW  DDAW TV+R+LPSPR D +R ISSLFH  EP  FDDDEVLD Q E+TE +    D   NNSIG+IEVKTYPEVSA+PR+T HNNF +LIHLKAP  SG    G N+T   PT+Q+ RAPVDLVTVLDVSGSMAGTK+ALLKRAMGFVIQ LGP DRLSVI+FSSTARRLFPLRRMT+
Sbjct:  152 NPVDWGHDDAWMTVLRQLPSPRQDASRHISSLFHAHEPAVFDDDEVLDXQXESTERSSSTRDI-DNNSIGAIEVKTYPEVSAVPRSTSHNNFTVLIHLKAPLTSGRQNSGTNQTNMQPTSQSCRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQSLGPCDRLSVISFSSTARRLFPLRRMTD 334          
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: B9SVA9_RICCO (Protein binding protein, putative OS=Ricinus communis GN=RCOM_0033580 PE=4 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 2.575e-74
Identity = 125/185 (67.57%), Postives = 142/185 (76.76%), Query Frame = -3
Query:    3 NPADWPRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDDEVLDLQHETTEENVFA-NDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPHPS----GGRNETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542
            N A WPRDDAW TV+RR+P  RLD  R ISSLFH  EP  FDDDE LD QHE    N+   ND++ ++S+G+I+VKTYPEVSA+ R+  H+NF +LIHLKAP  S       N       +QNSRAPVDLVTVLDVSGSMAGTK+ALLKRAMGFVIQ+LGPSDRLSVIAFSSTARRLFPLR MTE
Sbjct:  153 NAAGWPRDDAWMTVLRRVPPARLDTNRHISSLFHAQEPPIFDDDEALDQQHEIAHRNLSTKNDSSDSHSLGTIDVKTYPEVSAVSRSASHDNFCVLIHLKAPVTSIRHNSSSNHMELPQMSQNSRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGPSDRLSVIAFSSTARRLFPLRCMTE 337          
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: W9QUG0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008040 PE=4 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 2.900e-74
Identity = 121/180 (67.22%), Postives = 142/180 (78.89%), Query Frame = -3
Query:    3 NPADWPRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPHPSGGRNETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542
            NP  WP+DDAW TV+RRLPSPR++  RQI+SLFH +EP  FDDDEVLD Q E ++ +    DA   N    +++KT+PEVSA+PR + HNNF +LIHLKAP  S    E   +  +QN RAPVDLVTVLDVSGSMAGTK+ALLKRAMGFV+Q+LGPSDRLSVIAFSSTARRLFPLRRMTE
Sbjct:  150 NPVGWPQDDAWMTVLRRLPSPRMEAGRQIASLFHAAEPAVFDDDEVLDQQPEISDGSASKVDATNYNRAQIVDIKTHPEVSAVPRLSSHNNFTVLIHLKAPFIS---RENSGNQASQNPRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVVQNLGPSDRLSVIAFSSTARRLFPLRRMTE 326          
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: M1AEA0_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400008091 PE=4 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 1.199e-70
Identity = 115/176 (65.34%), Postives = 144/176 (81.82%), Query Frame = -3
Query:    3 WPRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPHPSGGRNETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 530
            WP+ DAW TVVR++P  RLD  R IS+LF T EP  FDDDEV+D +   +++N  + DA  ++S+G+IEVKT+PE+SA+ ++  H+NFA+L+HLKAPH  G  N++    T QNSRAPVDLVTVLDVSGSMAGTK+ALLKRAMGFVIQ+LGP+DRLSVIAFSSTARRLFPLRRM++
Sbjct:  161 WPQHDAWMTVVRQVPPARLDTNRNISNLFQTVEPSVFDDDEVVDHRPMGSQKNS-STDATNHHSMGAIEVKTWPEISAVTKSASHSNFAVLVHLKAPHAVGLLNQSGMPVTGQNSRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGPADRLSVIAFSSTARRLFPLRRMSD 335          
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: A0A0B2PDF5_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_024633 PE=4 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 5.637e-69
Identity = 117/180 (65.00%), Postives = 141/180 (78.33%), Query Frame = -3
Query:    3 PRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPHPSGGR-----NETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 527
            PR++ WTTV+RRLPSP+ D TRQISSL+H +EP  FDDDE LD Q           + A ++ I ++E+KTYPEVSA+P++  H+ FA+LIHLKAPH SG +     N T  SP  +NSRA VDLVTVLDVSGSMAGTK+ALLKRAMGFVIQ+LGPSDRLSVIAFSSTARR+FPLR+MT+
Sbjct:   63 PREEGWTTVLRRLPSPQGDATRQISSLYHVTEPAIFDDDEALDQQTSVAH----PKNEADHDVINTVEIKTYPEVSAVPKSASHDAFAVLIHLKAPH-SGRKQNNDANSTESSPLVENSRASVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGPSDRLSVIAFSSTARRIFPLRQMTD 237          
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: K4DAB6_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc11g069600.1 PE=4 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 7.582e-69
Identity = 113/176 (64.20%), Postives = 142/176 (80.68%), Query Frame = -3
Query:    3 WPRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPHPSGGRNETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 530
            WP+ DAW TVVR++P  RLD  R IS+LF T EP  FDDDEV+D +   +++N  + D   ++S+G+IEVKT+PE+SA+ ++  H+NFA+L+HLKAP   G  N++    T QNSRAPVDLVTVLDVSGSMAGTK+ALLKRAMGFVIQ+LGP+DRLSVIAFSSTARRLFPLRRM++
Sbjct:  161 WPQHDAWMTVVRQIPPARLDTNRNISNLFQTVEPSVFDDDEVVDHRPMGSQKNS-STDVTNHHSMGAIEVKTWPEISAVTKSASHSNFAVLVHLKAPRAVGLLNQSGMPVTGQNSRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGPADRLSVIAFSSTARRLFPLRRMSD 335          
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: A0A068UEU2_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_24 OS=Coffea canephora GN=GSCOC_T00024206001 PE=4 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.264e-67
Identity = 114/184 (61.96%), Postives = 139/184 (75.54%), Query Frame = -3
Query:    3 NPADWPRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPH----PSGGRNETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542
            N    P++D W TV+RRLP PR+D +R +SSLF T+EP  FDDDE++  Q ET E N   ND   +NS G+I++KTYPEVSAI +   H+NF ILIHLKAPH       G +++      Q+SR PVDLVTVLDVSGSMAGTK+ALLKRAMGFVIQ+LGPSDRLS++AFSSTARR+FPL RMT+
Sbjct:  155 NNVSLPQNDPWVTVLRRLPPPRVDTSRHVSSLFQTTEPSVFDDDEIIHYQPETMENNSSLNDLIADNSAGAIDLKTYPEVSAISKQAWHSNFTILIHLKAPHTIVPKQVGVDQSGSQMVPQHSRVPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGPSDRLSIVAFSSTARRVFPLHRMTD 338          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A061GX17_THECC1.200e-10487.43Zinc finger family protein OS=Theobroma cacao GN=T... [more]
A0A0B0PPX6_GOSAR3.052e-9883.06Uncharacterized protein OS=Gossypium arboreum GN=F... [more]
F6GU18_VITVI4.500e-8172.28Putative uncharacterized protein OS=Vitis vinifera... [more]
A5BI34_VITVI3.280e-7972.28Putative uncharacterized protein OS=Vitis vinifera... [more]
B9SVA9_RICCO2.575e-7467.57Protein binding protein, putative OS=Ricinus commu... [more]
W9QUG0_9ROSA2.900e-7467.22Uncharacterized protein OS=Morus notabilis GN=L484... [more]
M1AEA0_SOLTU1.199e-7065.34Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
A0A0B2PDF5_GLYSO5.637e-6965.00Uncharacterized protein OS=Glycine soja GN=glysoja... [more]
K4DAB6_SOLLC7.582e-6964.20Uncharacterized protein OS=Solanum lycopersicum GN... [more]
A0A068UEU2_COFCA1.264e-6761.96Coffea canephora DH200=94 genomic scaffold, scaffo... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002035von Willebrand factor, type AGENE3D3.40.50.410coord: 98..156
e-value: 5.9E-13
score: 48.4
IPR002035von Willebrand factor, type APFAMPF00092VWAcoord: 102..156
e-value: 2.5E-8
score: 34.2
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 102..158
score: 9.478
IPR002035von Willebrand factor, type ASUPERFAMILY53300vWA-likecoord: 100..155
NoneNo IPR availablePANTHERPTHR10579CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATORcoord: 1..158
NoneNo IPR availablePANTHERPTHR10579:SF61C3H4 TYPE ZINC FINGER PROTEIN-RELATEDcoord: 1..158

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0016052 ID=g.arboreum_cottongen_reftransV1_0016052; Name=g.arboreum_cottongen_reftransV1_0016052; organism=Gossypium arboreum; type=contig; length=544bp
GTTTCAGTCATCCGGCGAAGAGGAAAGAGGCGACGGGCTGTGGAGGAGAA
TGCAATAACAGAGAGCCGGTCAGATGGCCCAAGATGCTGTATAACAAACC
CCATAGCTCGCTTTAGTAACGCAATCTTGGTACCAGCCATGCTTCCACTA
ACATCAAGAACTGTGACAAGGTCAACTGGTGCCCGAGAATTTTGAGTTGT
AGGGGAAAACATAGTTTCATTTCTTCCCCCACTTGGATGGGGAGCCTTCA
GATGGATTAATATGGCAAAATTATTGTGACAGGTTGCTCTTGGAATGGCA
GAAACTTCAGGATATGTTTTAACTTCTATTGAACCAATAGAGTTATTCTT
AGCAGCATCATTGGCAAAGACATTTTCTTCAGTTGTCTCATGCTGCAGAT
CTAGTACTTCGTCATCATCAAAAGTACCTGGCTCAGAAGTATGAAAGAGT
GAAGAAATCTGCCTAGTTGGATCCAACCGAGGGGAAGGTAGCCGCCGTAC
CACAGTTGTCCACGCATCATCCCGGGGCCAGTCTGCTGGGTTGA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A