g.arboreum_cottongen_reftransV1_0016052, g.arboreum_cottongen_reftransV1_0016052 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: A0A061GX17_THECC (Zinc finger family protein OS=Theobroma cacao GN=TCM_042086 PE=4 SV=1) HSP 1 Score: 328.561 bits (841), Expect = 1.200e-104 Identity = 160/183 (87.43%), Postives = 166/183 (90.71%), Query Frame = -3 Query: 3 NPADWPRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPHPSGG---RNETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542 +P DWPRDDAW TVVRRLPSPRLD TRQISSLFH SEPGTFDDDEVLD Q ETTEENVFA D K NSIG+IEVKTYPEVSA+PRATCHNNFAILIHLKAPH SGG RN+T+ PT QNSRAPVDLVTVLDVSGSMAGTK+ALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE Sbjct: 183 SPVDWPRDDAWLTVVRRLPSPRLDSTRQISSLFHASEPGTFDDDEVLDQQVETTEENVFAKDITKINSIGAIEVKTYPEVSAVPRATCHNNFAILIHLKAPHASGGQNSRNQTVIPPTNQNSRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 365
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: A0A0B0PPX6_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_00607 PE=4 SV=1) HSP 1 Score: 311.227 bits (796), Expect = 3.052e-98 Identity = 152/183 (83.06%), Postives = 162/183 (88.52%), Query Frame = -3 Query: 3 NPADWPRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPHPSGG---RNETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542 NPADWPRDDAW VRRLPSPRLD TR +SSLF SEPGTFDDDEVLD Q E ++NVF DA+KNNSIG IEVKTYPEVSA+PRA HNNFAILIHLKAPH SGG R++T+FSP+TQNSRAPVDLVTVLDVSGSMAGTK+ALLKRAMGFVIQHLG SDRLSVIAFSSTARRLFPLRRMTE Sbjct: 155 NPADWPRDDAW--AVRRLPSPRLDSTRHVSSLFQVSEPGTFDDDEVLDQQQENPQQNVFEKDASKNNSIGGIEVKTYPEVSAVPRANSHNNFAILIHLKAPHTSGGLNSRDQTIFSPSTQNSRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQHLGSSDRLSVIAFSSTARRLFPLRRMTE 335
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: F6GU18_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g02630 PE=4 SV=1) HSP 1 Score: 266.159 bits (679), Expect = 4.500e-81 Identity = 133/184 (72.28%), Postives = 148/184 (80.43%), Query Frame = -3 Query: 3 NPADWPRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPHPSG----GRNETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542 NP DW DDAW TV+R+LPSPR D +R ISSLFH EP FDDDEVLD Q E+TE + D NNSIG+IEVKTYPEVSA+PR+T HNNF +LIHLKAP SG G N+T PT+Q+ RAPVDLVTVLDVSGSMAGTK+ALLKRAMGFVIQ LGP DRLSVI+FSSTARRLFPLRRMT+ Sbjct: 152 NPVDWGHDDAWMTVLRQLPSPRQDASRHISSLFHAHEPAVFDDDEVLDHQPESTERSSSTRDI-DNNSIGAIEVKTYPEVSAVPRSTSHNNFTVLIHLKAPLTSGRQNSGTNQTNMQPTSQSCRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQSLGPCDRLSVISFSSTARRLFPLRRMTD 334
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: A5BI34_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037547 PE=4 SV=1) HSP 1 Score: 266.929 bits (681), Expect = 3.280e-79 Identity = 133/184 (72.28%), Postives = 148/184 (80.43%), Query Frame = -3 Query: 3 NPADWPRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPHPSG----GRNETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542 NP DW DDAW TV+R+LPSPR D +R ISSLFH EP FDDDEVLD Q E+TE + D NNSIG+IEVKTYPEVSA+PR+T HNNF +LIHLKAP SG G N+T PT+Q+ RAPVDLVTVLDVSGSMAGTK+ALLKRAMGFVIQ LGP DRLSVI+FSSTARRLFPLRRMT+ Sbjct: 152 NPVDWGHDDAWMTVLRQLPSPRQDASRHISSLFHAHEPAVFDDDEVLDXQXESTERSSSTRDI-DNNSIGAIEVKTYPEVSAVPRSTSHNNFTVLIHLKAPLTSGRQNSGTNQTNMQPTSQSCRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQSLGPCDRLSVISFSSTARRLFPLRRMTD 334
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: B9SVA9_RICCO (Protein binding protein, putative OS=Ricinus communis GN=RCOM_0033580 PE=4 SV=1) HSP 1 Score: 248.054 bits (632), Expect = 2.575e-74 Identity = 125/185 (67.57%), Postives = 142/185 (76.76%), Query Frame = -3 Query: 3 NPADWPRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDDEVLDLQHETTEENVFA-NDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPHPS----GGRNETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542 N A WPRDDAW TV+RR+P RLD R ISSLFH EP FDDDE LD QHE N+ ND++ ++S+G+I+VKTYPEVSA+ R+ H+NF +LIHLKAP S N +QNSRAPVDLVTVLDVSGSMAGTK+ALLKRAMGFVIQ+LGPSDRLSVIAFSSTARRLFPLR MTE Sbjct: 153 NAAGWPRDDAWMTVLRRVPPARLDTNRHISSLFHAQEPPIFDDDEALDQQHEIAHRNLSTKNDSSDSHSLGTIDVKTYPEVSAVSRSASHDNFCVLIHLKAPVTSIRHNSSSNHMELPQMSQNSRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGPSDRLSVIAFSSTARRLFPLRCMTE 337
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: W9QUG0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008040 PE=4 SV=1) HSP 1 Score: 247.669 bits (631), Expect = 2.900e-74 Identity = 121/180 (67.22%), Postives = 142/180 (78.89%), Query Frame = -3 Query: 3 NPADWPRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPHPSGGRNETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542 NP WP+DDAW TV+RRLPSPR++ RQI+SLFH +EP FDDDEVLD Q E ++ + DA N +++KT+PEVSA+PR + HNNF +LIHLKAP S E + +QN RAPVDLVTVLDVSGSMAGTK+ALLKRAMGFV+Q+LGPSDRLSVIAFSSTARRLFPLRRMTE Sbjct: 150 NPVGWPQDDAWMTVLRRLPSPRMEAGRQIASLFHAAEPAVFDDDEVLDQQPEISDGSASKVDATNYNRAQIVDIKTHPEVSAVPRLSSHNNFTVLIHLKAPFIS---RENSGNQASQNPRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVVQNLGPSDRLSVIAFSSTARRLFPLRRMTE 326
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: M1AEA0_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400008091 PE=4 SV=1) HSP 1 Score: 238.424 bits (607), Expect = 1.199e-70 Identity = 115/176 (65.34%), Postives = 144/176 (81.82%), Query Frame = -3 Query: 3 WPRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPHPSGGRNETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 530 WP+ DAW TVVR++P RLD R IS+LF T EP FDDDEV+D + +++N + DA ++S+G+IEVKT+PE+SA+ ++ H+NFA+L+HLKAPH G N++ T QNSRAPVDLVTVLDVSGSMAGTK+ALLKRAMGFVIQ+LGP+DRLSVIAFSSTARRLFPLRRM++ Sbjct: 161 WPQHDAWMTVVRQVPPARLDTNRNISNLFQTVEPSVFDDDEVVDHRPMGSQKNS-STDATNHHSMGAIEVKTWPEISAVTKSASHSNFAVLVHLKAPHAVGLLNQSGMPVTGQNSRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGPADRLSVIAFSSTARRLFPLRRMSD 335
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: A0A0B2PDF5_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_024633 PE=4 SV=1) HSP 1 Score: 232.261 bits (591), Expect = 5.637e-69 Identity = 117/180 (65.00%), Postives = 141/180 (78.33%), Query Frame = -3 Query: 3 PRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPHPSGGR-----NETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 527 PR++ WTTV+RRLPSP+ D TRQISSL+H +EP FDDDE LD Q + A ++ I ++E+KTYPEVSA+P++ H+ FA+LIHLKAPH SG + N T SP +NSRA VDLVTVLDVSGSMAGTK+ALLKRAMGFVIQ+LGPSDRLSVIAFSSTARR+FPLR+MT+ Sbjct: 63 PREEGWTTVLRRLPSPQGDATRQISSLYHVTEPAIFDDDEALDQQTSVAH----PKNEADHDVINTVEIKTYPEVSAVPKSASHDAFAVLIHLKAPH-SGRKQNNDANSTESSPLVENSRASVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGPSDRLSVIAFSSTARRIFPLRQMTD 237
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: K4DAB6_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc11g069600.1 PE=4 SV=1) HSP 1 Score: 233.417 bits (594), Expect = 7.582e-69 Identity = 113/176 (64.20%), Postives = 142/176 (80.68%), Query Frame = -3 Query: 3 WPRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPHPSGGRNETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 530 WP+ DAW TVVR++P RLD R IS+LF T EP FDDDEV+D + +++N + D ++S+G+IEVKT+PE+SA+ ++ H+NFA+L+HLKAP G N++ T QNSRAPVDLVTVLDVSGSMAGTK+ALLKRAMGFVIQ+LGP+DRLSVIAFSSTARRLFPLRRM++ Sbjct: 161 WPQHDAWMTVVRQIPPARLDTNRNISNLFQTVEPSVFDDDEVVDHRPMGSQKNS-STDVTNHHSMGAIEVKTWPEISAVTKSASHSNFAVLVHLKAPRAVGLLNQSGMPVTGQNSRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGPADRLSVIAFSSTARRLFPLRRMSD 335
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Match: A0A068UEU2_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_24 OS=Coffea canephora GN=GSCOC_T00024206001 PE=4 SV=1) HSP 1 Score: 230.335 bits (586), Expect = 1.264e-67 Identity = 114/184 (61.96%), Postives = 139/184 (75.54%), Query Frame = -3 Query: 3 NPADWPRDDAWTTVVRRLPSPRLDPTRQISSLFHTSEPGTFDDDEVLDLQHETTEENVFANDAAKNNSIGSIEVKTYPEVSAIPRATCHNNFAILIHLKAPH----PSGGRNETMFSPTTQNSRAPVDLVTVLDVSGSMAGTKIALLKRAMGFVIQHLGPSDRLSVIAFSSTARRLFPLRRMTE 542 N P++D W TV+RRLP PR+D +R +SSLF T+EP FDDDE++ Q ET E N ND +NS G+I++KTYPEVSAI + H+NF ILIHLKAPH G +++ Q+SR PVDLVTVLDVSGSMAGTK+ALLKRAMGFVIQ+LGPSDRLS++AFSSTARR+FPL RMT+ Sbjct: 155 NNVSLPQNDPWVTVLRRLPPPRVDTSRHVSSLFQTTEPSVFDDDEIIHYQPETMENNSSLNDLIADNSAGAIDLKTYPEVSAISKQAWHSNFTILIHLKAPHTIVPKQVGVDQSGSQMVPQHSRVPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGPSDRLSIVAFSSTARRVFPLHRMTD 338 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0016052 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0016052 ID=g.arboreum_cottongen_reftransV1_0016052; Name=g.arboreum_cottongen_reftransV1_0016052; organism=Gossypium arboreum; type=contig; length=544bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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