g.arboreum_cottongen_reftransV1_0010994, g.arboreum_cottongen_reftransV1_0010994 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: A0A0D2RVT2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G088300 PE=4 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 2.007e-32 Identity = 73/209 (34.93%), Postives = 112/209 (53.59%), Query Frame = -3 Query: 507 QKLIFEAMCSTCGEKEESTAHVLCDCYVAKLVLQKMDVQIATMHENTEWKIWLTDTFKSNNTKQRICLAIAF*AI*HNRDLFYHAGVRQGINNIISFIKAFINEIKMLDNNLVRNHRIQDLQWKPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNGFVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKL 1133 KL+ + +C C +EE+ V +++ V +T + + WK WL F++ + + AI+F A+ +N + H G+R+ + I+ FI A+ +EI + L + W+PP +D VK+N D SF + + + S +I RN G V+ SCTYS ENI DP I E A L V AE +GFQ I +EGD L V++KL Sbjct: 7 HKLMVDTLCPICRAEEET-------------VQRELGVTNSTTNRESNWKKWLALEFENYSNEACKIRAISFWALWYNCNRISHEGIRERAHEIVRFINAYYSEITQMGEILKNRQETKRFVWEPPVDDAVKINFDASFNQYSRISCSLVIARNKEGLVMASCTYSWENISDPVIAEAMACLQAVTMAEEIGFQDICVEGDALTVIRKL 202
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: A0A0B0P4C3_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_24104 PE=4 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 9.576e-24 Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1 Query: 403 MNGSSSLGVFFHPKGRQIPSFSPHYDHMCCFICFLSFFTTFSGSPSKMMY 552 MNGSSSLGVFFHPKGRQIPSFSPHYDHMCCFICFLSFFTTFSGSPSKMMY Sbjct: 1 MNGSSSLGVFFHPKGRQIPSFSPHYDHMCCFICFLSFFTTFSGSPSKMMY 50
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: A0A0D2QTZ3_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_007G164800 PE=4 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.436e-22 Identity = 50/103 (48.54%), Postives = 65/103 (63.11%), Query Frame = -3 Query: 504 LDNNLVRNHRIQDLQWKPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNGFVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKLR 812 L L H W+PPS+ QVKVN D++F + +N+AVSGII+RN G VIG C+Y I N+R TI E Y L FAE +GF +I+EGD V+KKL+ Sbjct: 1 LKEALKCQHNTVITHWEPPSKSQVKVNFDSAFLQQSNKAVSGIIIRNYTGLVIGLCSYLIHNVRYLTIAEAYTCLKGAVFAEEIGFSDVIMEGDSRIVIKKLQ 103
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: A0A0B0MWR4_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_10378 PE=4 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 3.089e-18 Identity = 47/78 (60.26%), Postives = 54/78 (69.23%), Query Frame = 1 Query: 898 LLCQIA*NAIAKHILCFVLFDLKVSVNQIFHSVFSCMVAI*TSIFWRTSFAT*QSHKTCAVDSSFSPHVEHIASNMSF 1131 LLC IA N KH+ CFVL L+VS+NQ FH VFSC+ I TS WRT FA QS KTCA+DSS SP H ASN++F Sbjct: 3 LLCLIAQNEATKHVYCFVLLKLQVSINQRFHFVFSCVGPIRTSNLWRTCFAKLQSRKTCAIDSSSSPQSGHNASNLNF 80
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: A0A0D2MPE5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G154500 PE=4 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 1.192e-15 Identity = 58/186 (31.18%), Postives = 87/186 (46.77%), Query Frame = -3 Query: 435 EWKIWLTDTFKSNNTKQRICLAIAF*AI*HNRDLFYHAGVRQGINNIISFIKAFINEIKMLDNNLVRNHRIQDLQWKPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNGFVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKLRKQMKQHM*S*CGEKEGICRPFGW 992 EW WL + N K I ++I AI +R+ F H Q + I++FI++F E + +L ++W PP + K+N+D NNRAV G I+RN GF++G + I E A L + FA ++GF +ILE D VV ++K + + S RPF W Sbjct: 6 EWLSWLLEN-SEKNRKGLIVVSIW--AIWFSRNKFVHERNVQSLEEIVTFIRSFGLEYRSSAESLKHPQPRSMVKWSPPPQGYFKINVDAGLSVANNRAVLGFIIRNAEGFIMGHNL-----VHSMVIAEAIAVLDGLQFALDMGFSKVILESDSRLVVNNIQKSSEDYSES---------RPFTW 174
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: C5YAU3_SORBI (Putative uncharacterized protein Sb06g020406 (Fragment) OS=Sorghum bicolor GN=Sb06g020406 PE=4 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 1.295e-15 Identity = 59/211 (27.96%), Postives = 99/211 (46.92%), Query Frame = -3 Query: 507 CSTCGEKEESTAHVLCDCYVAKLVLQKMDVQIATMHEN---TEWKIWLTDTFKSNNTKQR--ICLAIAF*AI*HNRDLFYHAGVRQGINNIISFIKAFINEIKMLDNNLVR----NHRIQDLQ-WKPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNGFVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKL 1109 C CG +++ H L C ++K V +D I + + + K W+T F N Q I + + AI R H GV Q +I+ I I E++M+ ++ N Q + WK P + + K+N+D + + ++ G++ RN+ G I I NI +P +E A L +A AE+ G + II+ D LN+V+ + Sbjct: 117 CKICGAVDDTWEHSLLFCTMSKCVWALLDEDITNLISHLRISNPKHWIT--FMCCNIPQADGIRVLVTCWAIWQARRKAIHEGVFQSPFSIMVTINRQIEELQMIRGMELKGGNQNQSKQKTRLWKAPDQGKCKINVDAAVNRVGSKGAVGVVCRNDRGEFIAPSAMIIPNITEPETLEGMACLEALALAEDCGIRKIIVASDCLNIVRNI 325 HSP 2 Score: 33.4982 bits (75), Expect = 1.295e-15 Identity = 18/39 (46.15%), Postives = 24/39 (61.54%), Query Frame = -1 Query: 1106 KIPSKIKINLWRITNNFMPTLSNLKFKN----SYLKRCA 1210 K+PSKIK+ WR+ N +PT S LK +N S+ K C Sbjct: 83 KLPSKIKVFCWRLALNSIPTASVLKSRNLASTSHCKICG 121
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: A0A0D2VVI3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G046600 PE=4 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 2.358e-15 Identity = 36/127 (28.35%), Postives = 75/127 (59.06%), Query Frame = -3 Query: 507 YHAGVRQGINNIISFIKAFINEIKMLDNNLVRNHRIQDLQWKPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNGFVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKL 887 YH G+ Q + +++ I ++ E+++L + + +W+PP+E VKVN D +++ + ++ SG++V N NG ++G+ + + + E A + V+FA++LG +Y++ EG+ L V+K + Sbjct: 47 YHEGIVQTTSALVALIYSYYREVQVLGETCSLSVGHHERKWRPPAEPYVKVNFDATYRVHSWQSCSGVVVTNRNGLILGASKQLHHYVPNAFVAEVKAFIQTVSFADDLGLRYVVFEGNTLIVIKNI 173
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: W5GJT6_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 2.893e-15 Identity = 54/210 (25.71%), Postives = 99/210 (47.14%), Query Frame = -3 Query: 498 AMCSTCGEKEESTAHVLCDCYVAKLVLQKM----DVQIATMHENTEWKIWLTDTFKSNNTKQRICLAIAF*AI*HNRDLFYHAGVRQGINNIISFIKAFINEIKMLDNNLVRNHRIQDLQWKPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNGFVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKLRKQ 1115 + C TCG +EE+ H L DC AKL Q++ V++ +H + W + L D+ K ++ + L + A+ R+ +H ++ + + ++ + + H + +WKPP+ +K+N+D SF NN +G+IVR++ G ++ + I+E A V A ++G +I+E D VVK R + Sbjct: 5 SFCQTCG-REETIKHALFDCTWAKLFWQELKNLTSVKVPELHPDF-WTVDLIDSSKVSSEDAAVILCGGW-AVWSERNARHHEKRVGSVSKSVKWTADIAYDLTLTGQASGKQHHKERPRWKPPASGIIKLNVDASFSPNNNEGATGVIVRDHCGALLRGQAIWYGQTANVLIMEALAVRDGVRLACDIGLSKVIVESDAQEVVKLWRDR 211
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: M5WEH8_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019056mg PE=4 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.036e-14 Identity = 54/213 (25.35%), Postives = 95/213 (44.60%), Query Frame = -3 Query: 501 FEAMCSTCGEKEESTAHVLCDCYVAKLVLQKMDVQIATMHENT----EWKIWLTDTFKSNNTKQRICLAIAF*AI*HNRDLFYHAGVRQGINNIISFIKAFINE-IKMLDNNLVRNHRIQD-LQWKPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNGFVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKLRK 1121 + MC CG+ ES HVL C A + ++ + T H + K WL + + + QR + AI NR+ GV++ + ++ F + +++E I D R++D ++W P ++K N D +F + R G++ R+ +G + + S+ + E A VA A +LG I EGD VV +++ Sbjct: 1 LQDMCMFCGDITESALHVLAMCPFA---VATWNISLLTRHAHQVHCHTMKDWLREMLEGTSKAQRDHIITLLWAIWGNRNALLWQGVQRSPHEVVGFAQQYVHEFITANDTPSKVTDRVRDPVRWAAPPSGRLKFNFDGAFDPTSGRGAVGVVARDADGGFVAAVAKSVGEVLSAEHAEILAAREGVALALSLGTASPIFEGDSAVVVSAIKR 210
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: A0A0D2V078_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G397500 PE=4 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 1.010e-13 Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = -3 Query: 501 IGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKLRK 656 +GSCTY I+NIR TIVE YA LH VAFAE+LGFQ IILEGD L VVKKL+K Sbjct: 1 MGSCTYLIKNIRYLTIVEAYACLHGVAFAEDLGFQDIILEGDSLTVVKKLQK 52 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to top
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0010994 ID=g.arboreum_cottongen_reftransV1_0010994; Name=g.arboreum_cottongen_reftransV1_0010994; organism=Gossypium arboreum; type=contig; length=1210bpback to top |