g.arboreum_cottongen_reftransV1_0010994, g.arboreum_cottongen_reftransV1_0010994 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0010994
Unique Nameg.arboreum_cottongen_reftransV1_0010994
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1210
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr12chromosomeg.arboreum_cottongen_reftransV1_0010994:1..1210 .
Chr12:145445565..145446880 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: A0A0D2RVT2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G088300 PE=4 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.007e-32
Identity = 73/209 (34.93%), Postives = 112/209 (53.59%), Query Frame = -3
Query:  507 QKLIFEAMCSTCGEKEESTAHVLCDCYVAKLVLQKMDVQIATMHENTEWKIWLTDTFKSNNTKQRICLAIAF*AI*HNRDLFYHAGVRQGINNIISFIKAFINEIKMLDNNLVRNHRIQDLQWKPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNGFVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKL 1133
             KL+ + +C  C  +EE+             V +++ V  +T +  + WK WL   F++ + +     AI+F A+ +N +   H G+R+  + I+ FI A+ +EI  +   L      +   W+PP +D VK+N D SF + +  + S +I RN  G V+ SCTYS ENI DP I E  A L  V  AE +GFQ I +EGD L V++KL
Sbjct:    7 HKLMVDTLCPICRAEEET-------------VQRELGVTNSTTNRESNWKKWLALEFENYSNEACKIRAISFWALWYNCNRISHEGIRERAHEIVRFINAYYSEITQMGEILKNRQETKRFVWEPPVDDAVKINFDASFNQYSRISCSLVIARNKEGLVMASCTYSWENISDPVIAEAMACLQAVTMAEEIGFQDICVEGDALTVIRKL 202          
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: A0A0B0P4C3_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_24104 PE=4 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 9.576e-24
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1
Query:  403 MNGSSSLGVFFHPKGRQIPSFSPHYDHMCCFICFLSFFTTFSGSPSKMMY 552
            MNGSSSLGVFFHPKGRQIPSFSPHYDHMCCFICFLSFFTTFSGSPSKMMY
Sbjct:    1 MNGSSSLGVFFHPKGRQIPSFSPHYDHMCCFICFLSFFTTFSGSPSKMMY 50          
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: A0A0D2QTZ3_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_007G164800 PE=4 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.436e-22
Identity = 50/103 (48.54%), Postives = 65/103 (63.11%), Query Frame = -3
Query:  504 LDNNLVRNHRIQDLQWKPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNGFVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKLR 812
            L   L   H      W+PPS+ QVKVN D++F + +N+AVSGII+RN  G VIG C+Y I N+R  TI E Y  L    FAE +GF  +I+EGD   V+KKL+
Sbjct:    1 LKEALKCQHNTVITHWEPPSKSQVKVNFDSAFLQQSNKAVSGIIIRNYTGLVIGLCSYLIHNVRYLTIAEAYTCLKGAVFAEEIGFSDVIMEGDSRIVIKKLQ 103          
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: A0A0B0MWR4_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_10378 PE=4 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.089e-18
Identity = 47/78 (60.26%), Postives = 54/78 (69.23%), Query Frame = 1
Query:  898 LLCQIA*NAIAKHILCFVLFDLKVSVNQIFHSVFSCMVAI*TSIFWRTSFAT*QSHKTCAVDSSFSPHVEHIASNMSF 1131
            LLC IA N   KH+ CFVL  L+VS+NQ FH VFSC+  I TS  WRT FA  QS KTCA+DSS SP   H ASN++F
Sbjct:    3 LLCLIAQNEATKHVYCFVLLKLQVSINQRFHFVFSCVGPIRTSNLWRTCFAKLQSRKTCAIDSSSSPQSGHNASNLNF 80          
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: A0A0D2MPE5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G154500 PE=4 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.192e-15
Identity = 58/186 (31.18%), Postives = 87/186 (46.77%), Query Frame = -3
Query:  435 EWKIWLTDTFKSNNTKQRICLAIAF*AI*HNRDLFYHAGVRQGINNIISFIKAFINEIKMLDNNLVRNHRIQDLQWKPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNGFVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKLRKQMKQHM*S*CGEKEGICRPFGW 992
            EW  WL +     N K  I ++I   AI  +R+ F H    Q +  I++FI++F  E +    +L        ++W PP +   K+N+D      NNRAV G I+RN  GF++G        +    I E  A L  + FA ++GF  +ILE D   VV  ++K  + +  S         RPF W
Sbjct:    6 EWLSWLLEN-SEKNRKGLIVVSIW--AIWFSRNKFVHERNVQSLEEIVTFIRSFGLEYRSSAESLKHPQPRSMVKWSPPPQGYFKINVDAGLSVANNRAVLGFIIRNAEGFIMGHNL-----VHSMVIAEAIAVLDGLQFALDMGFSKVILESDSRLVVNNIQKSSEDYSES---------RPFTW 174          
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: C5YAU3_SORBI (Putative uncharacterized protein Sb06g020406 (Fragment) OS=Sorghum bicolor GN=Sb06g020406 PE=4 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.295e-15
Identity = 59/211 (27.96%), Postives = 99/211 (46.92%), Query Frame = -3
Query:  507 CSTCGEKEESTAHVLCDCYVAKLVLQKMDVQIATMHEN---TEWKIWLTDTFKSNNTKQR--ICLAIAF*AI*HNRDLFYHAGVRQGINNIISFIKAFINEIKMLDNNLVR----NHRIQDLQ-WKPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNGFVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKL 1109
            C  CG  +++  H L  C ++K V   +D  I  +  +   +  K W+T  F   N  Q   I + +   AI   R    H GV Q   +I+  I   I E++M+    ++    N   Q  + WK P + + K+N+D +  +  ++   G++ RN+ G  I      I NI +P  +E  A L  +A AE+ G + II+  D LN+V+ +
Sbjct:  117 CKICGAVDDTWEHSLLFCTMSKCVWALLDEDITNLISHLRISNPKHWIT--FMCCNIPQADGIRVLVTCWAIWQARRKAIHEGVFQSPFSIMVTINRQIEELQMIRGMELKGGNQNQSKQKTRLWKAPDQGKCKINVDAAVNRVGSKGAVGVVCRNDRGEFIAPSAMIIPNITEPETLEGMACLEALALAEDCGIRKIIVASDCLNIVRNI 325          

HSP 2 Score: 33.4982 bits (75), Expect = 1.295e-15
Identity = 18/39 (46.15%), Postives = 24/39 (61.54%), Query Frame = -1
Query: 1106 KIPSKIKINLWRITNNFMPTLSNLKFKN----SYLKRCA 1210
            K+PSKIK+  WR+  N +PT S LK +N    S+ K C 
Sbjct:   83 KLPSKIKVFCWRLALNSIPTASVLKSRNLASTSHCKICG 121          
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: A0A0D2VVI3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G046600 PE=4 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.358e-15
Identity = 36/127 (28.35%), Postives = 75/127 (59.06%), Query Frame = -3
Query:  507 YHAGVRQGINNIISFIKAFINEIKMLDNNLVRNHRIQDLQWKPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNGFVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKL 887
            YH G+ Q  + +++ I ++  E+++L      +    + +W+PP+E  VKVN D +++  + ++ SG++V N NG ++G+       + +  + E  A +  V+FA++LG +Y++ EG+ L V+K +
Sbjct:   47 YHEGIVQTTSALVALIYSYYREVQVLGETCSLSVGHHERKWRPPAEPYVKVNFDATYRVHSWQSCSGVVVTNRNGLILGASKQLHHYVPNAFVAEVKAFIQTVSFADDLGLRYVVFEGNTLIVIKNI 173          
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: W5GJT6_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.893e-15
Identity = 54/210 (25.71%), Postives = 99/210 (47.14%), Query Frame = -3
Query:  498 AMCSTCGEKEESTAHVLCDCYVAKLVLQKM----DVQIATMHENTEWKIWLTDTFKSNNTKQRICLAIAF*AI*HNRDLFYHAGVRQGINNIISFIKAFINEIKMLDNNLVRNHRIQDLQWKPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNGFVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKLRKQ 1115
            + C TCG +EE+  H L DC  AKL  Q++     V++  +H +  W + L D+ K ++    + L   + A+   R+  +H      ++  + +      ++ +      + H  +  +WKPP+   +K+N+D SF   NN   +G+IVR++ G ++           +  I+E  A    V  A ++G   +I+E D   VVK  R +
Sbjct:    5 SFCQTCG-REETIKHALFDCTWAKLFWQELKNLTSVKVPELHPDF-WTVDLIDSSKVSSEDAAVILCGGW-AVWSERNARHHEKRVGSVSKSVKWTADIAYDLTLTGQASGKQHHKERPRWKPPASGIIKLNVDASFSPNNNEGATGVIVRDHCGALLRGQAIWYGQTANVLIMEALAVRDGVRLACDIGLSKVIVESDAQEVVKLWRDR 211          
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: M5WEH8_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019056mg PE=4 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.036e-14
Identity = 54/213 (25.35%), Postives = 95/213 (44.60%), Query Frame = -3
Query:  501 FEAMCSTCGEKEESTAHVLCDCYVAKLVLQKMDVQIATMHENT----EWKIWLTDTFKSNNTKQRICLAIAF*AI*HNRDLFYHAGVRQGINNIISFIKAFINE-IKMLDNNLVRNHRIQD-LQWKPPSEDQVKVNIDTSFQKPNNRAVSGIIVRNNNGFVIGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKLRK 1121
             + MC  CG+  ES  HVL  C  A   +   ++ + T H +       K WL +  +  +  QR  +     AI  NR+     GV++  + ++ F + +++E I   D       R++D ++W  P   ++K N D +F   + R   G++ R+ +G  + +   S+  +      E  A    VA A +LG    I EGD   VV  +++
Sbjct:    1 LQDMCMFCGDITESALHVLAMCPFA---VATWNISLLTRHAHQVHCHTMKDWLREMLEGTSKAQRDHIITLLWAIWGNRNALLWQGVQRSPHEVVGFAQQYVHEFITANDTPSKVTDRVRDPVRWAAPPSGRLKFNFDGAFDPTSGRGAVGVVARDADGGFVAAVAKSVGEVLSAEHAEILAAREGVALALSLGTASPIFEGDSAVVVSAIKR 210          
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Match: A0A0D2V078_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G397500 PE=4 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.010e-13
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = -3
Query:  501 IGSCTYSIENIRDPTIVETYARLHEVAFAENLGFQYIILEGDPLNVVKKLRK 656
            +GSCTY I+NIR  TIVE YA LH VAFAE+LGFQ IILEGD L VVKKL+K
Sbjct:    1 MGSCTYLIKNIRYLTIVEAYACLHGVAFAEDLGFQDIILEGDSLTVVKKLQK 52          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2RVT2_GOSRA2.007e-3234.93Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B0P4C3_GOSAR9.576e-24100.00Uncharacterized protein OS=Gossypium arboreum GN=F... [more]
A0A0D2QTZ3_GOSRA1.436e-2248.54Uncharacterized protein (Fragment) OS=Gossypium ra... [more]
A0A0B0MWR4_GOSAR3.089e-1860.26Uncharacterized protein OS=Gossypium arboreum GN=F... [more]
A0A0D2MPE5_GOSRA1.192e-1531.18Uncharacterized protein OS=Gossypium raimondii GN=... [more]
C5YAU3_SORBI1.295e-1527.96Putative uncharacterized protein Sb06g020406 (Frag... [more]
A0A0D2VVI3_GOSRA2.358e-1528.35Uncharacterized protein OS=Gossypium raimondii GN=... [more]
W5GJT6_WHEAT2.893e-1525.71Uncharacterized protein OS=Triticum aestivum PE=4 ... [more]
M5WEH8_PRUPE3.036e-1425.35Uncharacterized protein (Fragment) OS=Prunus persi... [more]
A0A0D2V078_GOSRA1.010e-1375.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0010994 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13456RVT_3coord: 54..134
e-value: 1.1E-12
score: 47.6
NoneNo IPR availablePANTHERPTHR33033FAMILY NOT NAMEDcoord: 4..132

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0010994 ID=g.arboreum_cottongen_reftransV1_0010994; Name=g.arboreum_cottongen_reftransV1_0010994; organism=Gossypium arboreum; type=contig; length=1210bp
CTGAAGCTCCTCAATTCAAATCCTAATAAATAAAAGCAACAAGAAAAATC
CTAAAATCAAAAAAACCTTTCCCCTTCCCTTCTCATTTTTAACTACATCT
GTTGAAGAGTTTCTTTTGCTTGAGAACTTGGAACCCACAAGATTTTGTGC
TAAAACAATTTTCTTCCCACAGTTCCTTCTATTAACTGAGCTCATCGGAG
GCCTTGTTCTTTCTTCTTCGGACTCAGACCCTTAAAACTGTCGTCGACTC
TGTATCCTCCTTTTTCCTTTCTTTGTTCCTTTGTCTCTCTCTTTTTTTTT
TTTAGTTTTGCGATTTTGGTGACTGTAGTTCTCATAAATAAGAAACCAGT
GTTCTTTTTTGTGTTTTTGTGCCCTAATTCCATACCCCTTTGATCCTTCT
GAATGAATGGATCGTCCTCCCTCGGAGTTTTTTTCCACCCAAAAGGTCGG
CAAATCCCTTCCTTTTCCCCACATTACGATCACATGTGCTGCTTCATTTG
CTTCCTGAGCTTTTTTACGACATTCAGTGGATCTCCTTCTAAAATGATGT
ATTGAAACCCTAGGTTTTCTGCGAAGGCTACTTCGTGAAGGCGTGCATAG
GTTTCTACTATTGTTGGATCTCGTATGTTCTCAATCGAGTAGGTGCATGA
ACCGATTACAAAACCGTTGTTATTTCTTACTATAATTCCAGAAACTGCCC
TATTATTTGGCTTTTGAAAACTGGTGTCGATATTAACTTTAACTTGGTCT
TCTGATGGGGGTTTCCATTGTAGATCTTGTATTCTGTGGTTTCTTACAAG
ATTATTGTCCAACATTTTAATTTCGTTTATAAAGGCTTTGATGAAACTTA
TGATGTTGTTAATACCTTGTCGAACACCTGCATGATAAAACAAGTCTCTA
TTGTGTCAAATCGCCTAGAATGCGATTGCTAAACATATTCTCTGTTTTGT
ATTATTTGACTTAAAAGTATCGGTTAACCAAATTTTCCACTCTGTGTTTT
CATGCATGGTTGCAATTTGAACATCCATCTTTTGGAGAACAAGCTTTGCA
ACGTAACAATCGCATAAGACATGTGCAGTTGATTCTTCTTTTTCACCACA
TGTCGAGCACATCGCTTCAAATATGAGTTTTTGAATTTAAGATTACTTAG
AGTAGGCATGAAATTGTTTGTAATCCGCCATAGGTTGATTTTAATTTTGC
TGGGAATTTT
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