g.arboreum_cottongen_reftransV1_0010737, g.arboreum_cottongen_reftransV1_0010737 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: A0A0B0NDC8_GOSAR (Centriolin OS=Gossypium arboreum GN=F383_12092 PE=4 SV=1) HSP 1 Score: 334.724 bits (857), Expect = 1.896e-109 Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = -3 Query: 3 TFNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSSIVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQRGG 539 TFNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSSIVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLSAVSREASQSESSAAAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQRGG Sbjct: 239 TFNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSSIVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLSAVSREASQSESSAAAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQRGG 417
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: A0A0D2TAP0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G220100 PE=4 SV=1) HSP 1 Score: 321.242 bits (822), Expect = 3.493e-104 Identity = 174/179 (97.21%), Postives = 176/179 (98.32%), Query Frame = -3 Query: 3 TFNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSSIVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQRGG 539 TFNA QTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAV+DSSIVP GTFNQGQGNHF EIPGGFADLPLGQVTNPGVVQAVQGPMDL+LEAFVNPINTIQLSAVSREASQSESSAAAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQRGG Sbjct: 271 TFNAHQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVEDSSIVPKGTFNQGQGNHFPEIPGGFADLPLGQVTNPGVVQAVQGPMDLELEAFVNPINTIQLSAVSREASQSESSAAAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQRGG 449
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: A0A0D2PZK7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G220100 PE=4 SV=1) HSP 1 Score: 322.013 bits (824), Expect = 5.004e-104 Identity = 174/179 (97.21%), Postives = 176/179 (98.32%), Query Frame = -3 Query: 3 TFNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSSIVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQRGG 539 TFNA QTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAV+DSSIVP GTFNQGQGNHF EIPGGFADLPLGQVTNPGVVQAVQGPMDL+LEAFVNPINTIQLSAVSREASQSESSAAAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQRGG Sbjct: 271 TFNAHQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVEDSSIVPKGTFNQGQGNHFPEIPGGFADLPLGQVTNPGVVQAVQGPMDLELEAFVNPINTIQLSAVSREASQSESSAAAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQRGG 449
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: A0A061G7E5_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_016677 PE=4 SV=1) HSP 1 Score: 275.018 bits (702), Expect = 1.203e-85 Identity = 153/180 (85.00%), Postives = 162/180 (90.00%), Query Frame = -3 Query: 3 TFNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSSIVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSK-EFRERIIDNLKDDRKQRGG 539 TFNA QTGNVDKVSSVVSMLKGTLERKKL NQIEKEA +DSSI+PN TFNQGQGN FHEIPG FA++ LGQVTN GVVQ VQGPMDLDLE FVNP NTIQ+S VSREASQSESSAAAPV+SSG DACDGPSNSSQTLSICES+KKQ GN +SENG KSK +FRERIIDNLKDDRKQRGG Sbjct: 296 TFNAPQTGNVDKVSSVVSMLKGTLERKKLSNQIEKEAGEDSSIMPNSTFNQGQGNLFHEIPGAFAEVSLGQVTNTGVVQVVQGPMDLDLEGFVNPTNTIQMSTVSREASQSESSAAAPVVSSGFDACDGPSNSSQTLSICESSKKQVGNGRSSENGCKSKADFRERIIDNLKDDRKQRGG 475
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: B9GZW6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s10210g PE=4 SV=1) HSP 1 Score: 225.328 bits (573), Expect = 3.812e-67 Identity = 130/193 (67.36%), Postives = 152/193 (78.76%), Query Frame = -3 Query: 3 PSNSSSSTFNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSS------IVPNGTFNQGQGNHFHEIP-GGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQRGG 560 P+NSSSSTFN Q ++DKVSSVV+MLKGTLERKKLGNQIEKE V+DSS V N TF+Q +GN HEIP G F ++ GQV +P ++ VQGPMDLD E FVN IN +QLS VSRE SQS SSAA PV+SS DACDGPSNSSQTLSICE+++KQ GN +SENG ++K+FR+RIIDNLKDDRK RGG Sbjct: 226 PTNSSSSTFNTPQMSSIDKVSSVVNMLKGTLERKKLGNQIEKEIVEDSSNAFYHVQVINSTFDQQKGNGIHEIPPGSFQEISPGQVKDPEFLKTVQGPMDLDFEGFVNTINPVQLSTVSREPSQSGSSAATPVVSSAFDACDGPSNSSQTLSICETSRKQIGNGRSSENGPRAKDFRDRIIDNLKDDRK-RGG 417
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: B9S1L7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0866370 PE=4 SV=1) HSP 1 Score: 220.32 bits (560), Expect = 5.828e-66 Identity = 124/184 (67.39%), Postives = 148/184 (80.43%), Query Frame = -3 Query: 12 TFNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSS--------IVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQ 539 TFN Q G+VDKVSSVVSMLKG LERKKL NQIEKE ++DS+ I+ + +FNQG+GN+ HEIP G+ +L GQV + + QAVQ P+DLDLE FVNP+N IQLS VSREASQSESSAAAPV+S G DACDGPSNSSQTLS+CES++KQ GNN ENGS++K+ RERII+NLKDDRK+ Sbjct: 158 TFNTPQMGDVDKVSSVVSMLKGALERKKLSNQIEKETIEDSTNAIYHSQEILMDSSFNQGEGNNIHEIPHGYQELSSGQVNDARLFQAVQEPIDLDLEGFVNPMNPIQLSTVSREASQSESSAAAPVVSCGFDACDGPSNSSQTLSMCESSRKQVGNNKGPENGSRAKDIRERIIENLKDDRKR 341
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: B9GLN6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s01310g PE=4 SV=2) HSP 1 Score: 212.231 bits (539), Expect = 1.549e-62 Identity = 122/182 (67.03%), Postives = 145/182 (79.67%), Query Frame = -3 Query: 6 QTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDS--------SIVPNGTFNQGQGNHFHEIP-GGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQRG 524 Q ++DKVSSVV+MLKGTLERKKLG+QIEKE V+DS + N T +QG+GN +EIP G F ++ GQV +PGV+Q VQGPMDLD E FVN IN IQL VSRE SQSESSAAAPV+SSG DACDGPSNSSQTLS+CES++K+ GN +SENGS++K+FRERIIDNLKDDRK+ G Sbjct: 195 QMSSIDKVSSVVNMLKGTLERKKLGSQIEKETVEDSLNVFFHSQEVTINSTSDQGKGNGIYEIPPGSFQEISSGQVKDPGVLQTVQGPMDLDFEGFVNTINPIQLGTVSREPSQSESSAAAPVVSSGFDACDGPSNSSQTLSVCESSRKRVGNGRSSENGSRAKDFRERIIDNLKDDRKKGG 376
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: V4T951_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000885mg PE=4 SV=1) HSP 1 Score: 208.764 bits (530), Expect = 5.582e-61 Identity = 120/192 (62.50%), Postives = 141/192 (73.44%), Query Frame = -3 Query: 6 TFNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSS--IVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSK------------EFRERIIDNLKDDRKQRG 539 TFN QTGN+D VSSVVSMLKGTLERKKL NQIEKE ++ S + F+ G GNH HE+ G +L GQV +PGV+Q +QG DLDLE FVNP NT QLS SRE SQSESSAAAPV+SSG D CDGPSNSSQT+SICES++++ GN +SENGS++K +FRERIIDNLKDDRK+ G Sbjct: 213 TFNTPQTGNIDNVSSVVSMLKGTLERKKLSNQIEKETFEEFSNGLYRAQEFSNGHGNHIHEMQGTLQELSAGQVKDPGVLQMIQGSFDLDLEGFVNPTNTNQLSTFSREPSQSESSAAAPVVSSGFDTCDGPSNSSQTVSICESSRRRVGNGKSSENGSRAKGFLMPVYSSLTADFRERIIDNLKDDRKREG 404
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: A0A067KXS8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02768 PE=4 SV=1) HSP 1 Score: 202.216 bits (513), Expect = 1.871e-58 Identity = 118/182 (64.84%), Postives = 142/182 (78.02%), Query Frame = -3 Query: 6 QTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSS--------IVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPI-NTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQRG 524 Q G VDKVSSVVSMLKGTLERKKLGNQIEKE V+DS+ + N +F+QGQG ++I F ++ G++ + GV Q V+ DL++E FVNPI N IQ S +SRE SQSESSAAAPV+SSG DACDGPSNSSQTLSICES++KQ GNN +SENGSK+K+ RERII+NLKDDRK+RG Sbjct: 225 QIGEVDKVSSVVSMLKGTLERKKLGNQIEKETVEDSANAIYYGQQVTNNASFHQGQGKSINDITQTFQEISSGEIKDAGVFQTVE---DLEMEGFVNPILNPIQFSTISREPSQSESSAAAPVVSSGFDACDGPSNSSQTLSICESSRKQVGNNLSSENGSKAKDIRERIIENLKDDRKRRG 403
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: A5BMB2_VITVI (Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_023693 PE=4 SV=1) HSP 1 Score: 196.052 bits (497), Expect = 5.144e-57 Identity = 119/185 (64.32%), Postives = 138/185 (74.59%), Query Frame = -3 Query: 12 TFNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSSI--------VPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIID-NLKDDRKQ 539 TFN Q GNVDKVSSVVSMLKGTLERKKL NQIEKEAV+DSSI V N T QGQGN E G F ++ QV + G Q ++G MDLDLE FV P+N IQ+S VS+E SQSESSAAAPVIS+G DACDGPSNS QTLS+CES++KQ GN SEN S++KE R+RI + NLKD+RK+ Sbjct: 97 TFNTPQMGNVDKVSSVVSMLKGTLERKKLSNQIEKEAVEDSSIGYYGAPEVVVNATLGQGQGNSIPESSGTFQEVSPVQVKDHGDFQIIEGSMDLDLEGFVAPLNPIQMSTVSQEPSQSESSAAAPVISAGFDACDGPSNSGQTLSVCESSRKQVGNGRXSENDSRTKEIRQRIFESNLKDERKK 281 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0010737 ID=g.arboreum_cottongen_reftransV1_0010737; Name=g.arboreum_cottongen_reftransV1_0010737; organism=Gossypium arboreum; type=contig; length=562bpback to top |