g.arboreum_cottongen_reftransV1_0010737, g.arboreum_cottongen_reftransV1_0010737 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0010737
Unique Nameg.arboreum_cottongen_reftransV1_0010737
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length562
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr6chromosomeg.arboreum_cottongen_reftransV1_0010737:1..562 .
Chr6:49911250..49912115 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: A0A0B0NDC8_GOSAR (Centriolin OS=Gossypium arboreum GN=F383_12092 PE=4 SV=1)

HSP 1 Score: 334.724 bits (857), Expect = 1.896e-109
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = -3
Query:    3 TFNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSSIVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQRGG 539
            TFNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSSIVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLSAVSREASQSESSAAAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQRGG
Sbjct:  239 TFNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSSIVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLSAVSREASQSESSAAAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQRGG 417          
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: A0A0D2TAP0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G220100 PE=4 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 3.493e-104
Identity = 174/179 (97.21%), Postives = 176/179 (98.32%), Query Frame = -3
Query:    3 TFNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSSIVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQRGG 539
            TFNA QTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAV+DSSIVP GTFNQGQGNHF EIPGGFADLPLGQVTNPGVVQAVQGPMDL+LEAFVNPINTIQLSAVSREASQSESSAAAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQRGG
Sbjct:  271 TFNAHQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVEDSSIVPKGTFNQGQGNHFPEIPGGFADLPLGQVTNPGVVQAVQGPMDLELEAFVNPINTIQLSAVSREASQSESSAAAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQRGG 449          
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: A0A0D2PZK7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G220100 PE=4 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 5.004e-104
Identity = 174/179 (97.21%), Postives = 176/179 (98.32%), Query Frame = -3
Query:    3 TFNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSSIVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQRGG 539
            TFNA QTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAV+DSSIVP GTFNQGQGNHF EIPGGFADLPLGQVTNPGVVQAVQGPMDL+LEAFVNPINTIQLSAVSREASQSESSAAAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQRGG
Sbjct:  271 TFNAHQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVEDSSIVPKGTFNQGQGNHFPEIPGGFADLPLGQVTNPGVVQAVQGPMDLELEAFVNPINTIQLSAVSREASQSESSAAAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQRGG 449          
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: A0A061G7E5_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_016677 PE=4 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 1.203e-85
Identity = 153/180 (85.00%), Postives = 162/180 (90.00%), Query Frame = -3
Query:    3 TFNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSSIVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSK-EFRERIIDNLKDDRKQRGG 539
            TFNA QTGNVDKVSSVVSMLKGTLERKKL NQIEKEA +DSSI+PN TFNQGQGN FHEIPG FA++ LGQVTN GVVQ VQGPMDLDLE FVNP NTIQ+S VSREASQSESSAAAPV+SSG DACDGPSNSSQTLSICES+KKQ GN  +SENG KSK +FRERIIDNLKDDRKQRGG
Sbjct:  296 TFNAPQTGNVDKVSSVVSMLKGTLERKKLSNQIEKEAGEDSSIMPNSTFNQGQGNLFHEIPGAFAEVSLGQVTNTGVVQVVQGPMDLDLEGFVNPTNTIQMSTVSREASQSESSAAAPVVSSGFDACDGPSNSSQTLSICESSKKQVGNGRSSENGCKSKADFRERIIDNLKDDRKQRGG 475          
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: B9GZW6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s10210g PE=4 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.812e-67
Identity = 130/193 (67.36%), Postives = 152/193 (78.76%), Query Frame = -3
Query:    3 PSNSSSSTFNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSS------IVPNGTFNQGQGNHFHEIP-GGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQRGG 560
            P+NSSSSTFN  Q  ++DKVSSVV+MLKGTLERKKLGNQIEKE V+DSS       V N TF+Q +GN  HEIP G F ++  GQV +P  ++ VQGPMDLD E FVN IN +QLS VSRE SQS SSAA PV+SS  DACDGPSNSSQTLSICE+++KQ GN  +SENG ++K+FR+RIIDNLKDDRK RGG
Sbjct:  226 PTNSSSSTFNTPQMSSIDKVSSVVNMLKGTLERKKLGNQIEKEIVEDSSNAFYHVQVINSTFDQQKGNGIHEIPPGSFQEISPGQVKDPEFLKTVQGPMDLDFEGFVNTINPVQLSTVSREPSQSGSSAATPVVSSAFDACDGPSNSSQTLSICETSRKQIGNGRSSENGPRAKDFRDRIIDNLKDDRK-RGG 417          
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: B9S1L7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0866370 PE=4 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 5.828e-66
Identity = 124/184 (67.39%), Postives = 148/184 (80.43%), Query Frame = -3
Query:   12 TFNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSS--------IVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQ 539
            TFN  Q G+VDKVSSVVSMLKG LERKKL NQIEKE ++DS+        I+ + +FNQG+GN+ HEIP G+ +L  GQV +  + QAVQ P+DLDLE FVNP+N IQLS VSREASQSESSAAAPV+S G DACDGPSNSSQTLS+CES++KQ GNN   ENGS++K+ RERII+NLKDDRK+
Sbjct:  158 TFNTPQMGDVDKVSSVVSMLKGALERKKLSNQIEKETIEDSTNAIYHSQEILMDSSFNQGEGNNIHEIPHGYQELSSGQVNDARLFQAVQEPIDLDLEGFVNPMNPIQLSTVSREASQSESSAAAPVVSCGFDACDGPSNSSQTLSMCESSRKQVGNNKGPENGSRAKDIRERIIENLKDDRKR 341          
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: B9GLN6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s01310g PE=4 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 1.549e-62
Identity = 122/182 (67.03%), Postives = 145/182 (79.67%), Query Frame = -3
Query:    6 QTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDS--------SIVPNGTFNQGQGNHFHEIP-GGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQRG 524
            Q  ++DKVSSVV+MLKGTLERKKLG+QIEKE V+DS         +  N T +QG+GN  +EIP G F ++  GQV +PGV+Q VQGPMDLD E FVN IN IQL  VSRE SQSESSAAAPV+SSG DACDGPSNSSQTLS+CES++K+ GN  +SENGS++K+FRERIIDNLKDDRK+ G
Sbjct:  195 QMSSIDKVSSVVNMLKGTLERKKLGSQIEKETVEDSLNVFFHSQEVTINSTSDQGKGNGIYEIPPGSFQEISSGQVKDPGVLQTVQGPMDLDFEGFVNTINPIQLGTVSREPSQSESSAAAPVVSSGFDACDGPSNSSQTLSVCESSRKRVGNGRSSENGSRAKDFRERIIDNLKDDRKKGG 376          
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: V4T951_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000885mg PE=4 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 5.582e-61
Identity = 120/192 (62.50%), Postives = 141/192 (73.44%), Query Frame = -3
Query:    6 TFNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSS--IVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSK------------EFRERIIDNLKDDRKQRG 539
            TFN  QTGN+D VSSVVSMLKGTLERKKL NQIEKE  ++ S  +     F+ G GNH HE+ G   +L  GQV +PGV+Q +QG  DLDLE FVNP NT QLS  SRE SQSESSAAAPV+SSG D CDGPSNSSQT+SICES++++ GN  +SENGS++K            +FRERIIDNLKDDRK+ G
Sbjct:  213 TFNTPQTGNIDNVSSVVSMLKGTLERKKLSNQIEKETFEEFSNGLYRAQEFSNGHGNHIHEMQGTLQELSAGQVKDPGVLQMIQGSFDLDLEGFVNPTNTNQLSTFSREPSQSESSAAAPVVSSGFDTCDGPSNSSQTVSICESSRRRVGNGKSSENGSRAKGFLMPVYSSLTADFRERIIDNLKDDRKREG 404          
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: A0A067KXS8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02768 PE=4 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.871e-58
Identity = 118/182 (64.84%), Postives = 142/182 (78.02%), Query Frame = -3
Query:    6 QTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSS--------IVPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPI-NTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIIDNLKDDRKQRG 524
            Q G VDKVSSVVSMLKGTLERKKLGNQIEKE V+DS+        +  N +F+QGQG   ++I   F ++  G++ + GV Q V+   DL++E FVNPI N IQ S +SRE SQSESSAAAPV+SSG DACDGPSNSSQTLSICES++KQ GNN +SENGSK+K+ RERII+NLKDDRK+RG
Sbjct:  225 QIGEVDKVSSVVSMLKGTLERKKLGNQIEKETVEDSANAIYYGQQVTNNASFHQGQGKSINDITQTFQEISSGEIKDAGVFQTVE---DLEMEGFVNPILNPIQFSTISREPSQSESSAAAPVVSSGFDACDGPSNSSQTLSICESSRKQVGNNLSSENGSKAKDIRERIIENLKDDRKRRG 403          
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Match: A5BMB2_VITVI (Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_023693 PE=4 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 5.144e-57
Identity = 119/185 (64.32%), Postives = 138/185 (74.59%), Query Frame = -3
Query:   12 TFNALQTGNVDKVSSVVSMLKGTLERKKLGNQIEKEAVKDSSI--------VPNGTFNQGQGNHFHEIPGGFADLPLGQVTNPGVVQAVQGPMDLDLEAFVNPINTIQLXXXXXXXXXXXXXXXAPVISSGLDACDGPSNSSQTLSICESTKKQAGNNWNSENGSKSKEFRERIID-NLKDDRKQ 539
            TFN  Q GNVDKVSSVVSMLKGTLERKKL NQIEKEAV+DSSI        V N T  QGQGN   E  G F ++   QV + G  Q ++G MDLDLE FV P+N IQ+S VS+E SQSESSAAAPVIS+G DACDGPSNS QTLS+CES++KQ GN   SEN S++KE R+RI + NLKD+RK+
Sbjct:   97 TFNTPQMGNVDKVSSVVSMLKGTLERKKLSNQIEKEAVEDSSIGYYGAPEVVVNATLGQGQGNSIPESSGTFQEVSPVQVKDHGDFQIIEGSMDLDLEGFVAPLNPIQMSTVSQEPSQSESSAAAPVISAGFDACDGPSNSGQTLSVCESSRKQVGNGRXSENDSRTKEIRQRIFESNLKDERKK 281          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0NDC8_GOSAR1.896e-109100.00Centriolin OS=Gossypium arboreum GN=F383_12092 PE=... [more]
A0A0D2TAP0_GOSRA3.493e-10497.21Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2PZK7_GOSRA5.004e-10497.21Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061G7E5_THECC1.203e-8585.00Uncharacterized protein OS=Theobroma cacao GN=TCM_... [more]
B9GZW6_POPTR3.812e-6767.36Uncharacterized protein OS=Populus trichocarpa GN=... [more]
B9S1L7_RICCO5.828e-6667.39Putative uncharacterized protein OS=Ricinus commun... [more]
B9GLN6_POPTR1.549e-6267.03Uncharacterized protein OS=Populus trichocarpa GN=... [more]
V4T951_9ROSI5.582e-6162.50Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A067KXS8_JATCU1.871e-5864.84Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
A5BMB2_VITVI5.144e-5764.32Putative uncharacterized protein (Fragment) OS=Vit... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0010737 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36890FAMILY NOT NAMEDcoord: 1..160

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0010737 ID=g.arboreum_cottongen_reftransV1_0010737; Name=g.arboreum_cottongen_reftransV1_0010737; organism=Gossypium arboreum; type=contig; length=562bp
AGGCCTCCCCTTTGCTTCCGATCATCTTTCAAGTTGTCAATTATCCTTTC
TCTGAATTCTTTAGATTTAGAGCCATTTTCTGAGTTCCAGTTGTTTCCAG
CTTGTTTCTTTGTGCTTTCACATATGCTTAAGGTTTGACTTGAGTTGCTC
GGGCCATCACATGCATCCAAACCAGATGAAATCACCGGTGCAGCAGCCGA
GGATTCGCTTTGAGAAGCTTCTCGAGAAACTGCGCTCAACTGAATTGTGT
TTATGGGATTTACAAAAGCTTCCAAGTCAAGATCCATAGGCCCCTGAACA
GCTTGTACAACCCCGGGATTTGTTACTTGGCCAAGGGGTAAGTCTGCGAA
ACCCCCTGGAATTTCATGAAAATGATTCCCTTGTCCTTGGTTGAAGGTGC
CATTAGGCACAATAGAACTATCTTTGACCGCTTCTTTCTCGATTTGGTTG
CCGAGCTTTTTACGTTCTAGTGTACCCTTTAGCATGCTCACAACGGAAGA
AACTTTATCTACATTTCCAGTTTGGAGTGCATTAAATGTAGATGAGGATG
AATTTGATGGAG
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