g.arboreum_cottongen_reftransV1_0001983, g.arboreum_cottongen_reftransV1_0001983 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0001983
Unique Nameg.arboreum_cottongen_reftransV1_0001983
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length411
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr4chromosomeg.arboreum_cottongen_reftransV1_0001983:1..411 .
Chr4:33204875..33205482 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy TrEMBL
Match: A0A0D2TEK2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G059700 PE=4 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 3.740e-86
Identity = 134/137 (97.81%), Postives = 135/137 (98.54%), Query Frame = 1
Query:    1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASASISHATFSCDSLLVYTGFV 411
            MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQ+AIYDMRKMECIKQLAIGEASASISHATFSCDS LVYT FV
Sbjct:  850 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQLAIYDMRKMECIKQLAIGEASASISHATFSCDSQLVYTSFV 986          
BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy TrEMBL
Match: B9HAH3_POPTR (WD-40 repeat family protein OS=Populus trichocarpa GN=POPTR_0006s27400g PE=4 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 3.619e-60
Identity = 96/137 (70.07%), Postives = 113/137 (82.48%), Query Frame = 1
Query:    1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASASISHATFSCDSLLVYTGFV 411
            M+DSTV+IYNVR+DEVKSKL+GHSKRITGLAFS +LN LVSSGAD+Q+IVW ++ WERK  C LQ PAGRTP A SDTQ+QFHQDQ  LL  ++TQ+ IY+  K+EC+KQ  IGE SA ISHATFSCDS LVY  F+
Sbjct:  863 MDDSTVHIYNVRVDEVKSKLKGHSKRITGLAFSSVLNTLVSSGADSQVIVWSIDRWERKKNCVLQVPAGRTPAAMSDTQVQFHQDQVHLLVAHDTQLGIYETTKLECLKQWTIGEFSAPISHATFSCDSQLVYASFL 999          
BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy TrEMBL
Match: B9IL09_POPTR (WD-40 repeat family protein OS=Populus trichocarpa GN=POPTR_0018s02080g PE=4 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 3.478e-58
Identity = 97/137 (70.80%), Postives = 110/137 (80.29%), Query Frame = 1
Query:    1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASASISHATFSCDSLLVYTGFV 411
            M+DST++IYNVR+DEVKSKL GHSKRI GLAFS +LN LVSSGADAQ+IVW  + WERK  C LQ PAGRTP A S TQ+QFHQDQ  LL V+ET +AIY+  K+EC+KQ  IGE SA ISHATFSCDS LVY  FV
Sbjct:  880 MDDSTIHIYNVRVDEVKSKLMGHSKRIAGLAFSNVLNTLVSSGADAQVIVWSTDRWERKKNCVLQIPAGRTPPAMSGTQVQFHQDQIHLLVVHETLLAIYETTKLECLKQWNIGEFSAPISHATFSCDSQLVYASFV 1016          
BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy TrEMBL
Match: B9N190_POPTR (WD-40 repeat family protein OS=Populus trichocarpa GN=POPTR_0001s20770g PE=4 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 2.941e-56
Identity = 91/137 (66.42%), Postives = 114/137 (83.21%), Query Frame = 1
Query:    1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASASISHATFSCDSLLVYTGFV 411
            M+DST+ IYNVR+DEVKSKL+GHSKRITGLAFS +LN+LVSSGADAQ+ VW+ + WE++   +LQ PAGRTPTA+SDT++QFHQDQ   L V+ETQ+AIY+  K+EC+KQ  + E+SA ISHA FSCDS LVY  F+
Sbjct:  919 MDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHVLNMLVSSGADAQLCVWNSDGWEKQKARFLQVPAGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIYETTKLECVKQWVLRESSAPISHAVFSCDSHLVYASFL 1055          
BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy TrEMBL
Match: M0SMK9_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 6.723e-56
Identity = 92/137 (67.15%), Postives = 110/137 (80.29%), Query Frame = 1
Query:    1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASASISHATFSCDSLLVYTGFV 411
            MEDST+ IYNVR+DEVKSKLRGHSKRITGLAFS +LN+LVSSGADAQ+ +W  + WE+    +LQ P GRTP A SDT++QFHQDQ   LAV+ETQIA+Y+  K+EC+KQ A  E SA ISHATFSCDS L+Y  F+
Sbjct:  916 MEDSTIQIYNVRVDEVKSKLRGHSKRITGLAFSNVLNVLVSSGADAQLCLWGTDGWEKHRSRFLQIPPGRTPAAISDTRVQFHQDQIHFLAVHETQIALYETTKLECVKQWAPREGSAPISHATFSCDSQLIYASFL 1052          
BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy TrEMBL
Match: D7TZB7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g08370 PE=4 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 1.635e-55
Identity = 91/137 (66.42%), Postives = 113/137 (82.48%), Query Frame = 1
Query:    1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASASISHATFSCDSLLVYTGFV 411
            M+DST+ IYNVR+DEVKSKL+GHSKRITGLAFS +LN+LVSSGADAQ+ VW  + WE++   +LQ PAGRT T +SDT++QFHQDQT  L V+ETQ+AIY+  K++C+KQ    EA+A ISHATFSCDSLLVY  F+
Sbjct:  903 MDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHVLNVLVSSGADAQLCVWSSDGWEKQKSRFLQVPAGRTSTGQSDTRVQFHQDQTHFLVVHETQLAIYEATKLDCVKQWVQREAAAPISHATFSCDSLLVYASFL 1039          
BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy TrEMBL
Match: A0A067EEH6_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0012242mg PE=4 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.078e-55
Identity = 87/137 (63.50%), Postives = 111/137 (81.02%), Query Frame = 1
Query:    1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASASISHATFSCDSLLVYTGFV 411
            M+DS++ IYNVR+DEVKSKL+GHSKRITGLAFS  LN+LVSSGAD+Q+ VW  + WE++   +LQ P GRTPTA+SDT++QFHQDQ   L V+ETQ+AI++  K+EC+KQ    E+SA I+HATFSCDS LVY  F+
Sbjct:  280 MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL 416          
BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy TrEMBL
Match: U5GP80_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s02410g PE=4 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.376e-55
Identity = 87/137 (63.50%), Postives = 111/137 (81.02%), Query Frame = 1
Query:    1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASASISHATFSCDSLLVYTGFV 411
            M+DST+ IYNVR+DEVKSKL+GHSKRITGLAFS +L++LVSSGADAQ+ VW+ + WE++   +LQ P GRT TA+SDT++QFHQDQ   L V+ETQ+AI++  K+EC+KQ    E+SA ISHA FSCDS LVY  F+
Sbjct:  171 MDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHVLSVLVSSGADAQLCVWNSDGWEKQKTRFLQVPTGRTTTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWLPRESSAPISHAVFSCDSQLVYASFL 307          
BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy TrEMBL
Match: A0A067EAS9_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0012242mg PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.417e-55
Identity = 87/137 (63.50%), Postives = 111/137 (81.02%), Query Frame = 1
Query:    1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASASISHATFSCDSLLVYTGFV 411
            M+DS++ IYNVR+DEVKSKL+GHSKRITGLAFS  LN+LVSSGAD+Q+ VW  + WE++   +LQ P GRTPTA+SDT++QFHQDQ   L V+ETQ+AI++  K+EC+KQ    E+SA I+HATFSCDS LVY  F+
Sbjct:  312 MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL 448          
BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy TrEMBL
Match: W9RBZ1_9ROSA (Protein TOPLESS OS=Morus notabilis GN=L484_025714 PE=4 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 3.487e-55
Identity = 90/137 (65.69%), Postives = 114/137 (83.21%), Query Frame = 1
Query:    1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASASISHATFSCDSLLVYTGFV 411
            M+DST+ IYNVR+DEVKSKL+GHSKRITGLAFS +LN+LVSSGADAQI VW  + WE++   +LQ P+GRTP+++SDT++QFHQDQ   L V+ETQ+AIY+  K+EC+KQ    E++ASISHATFSCDS LVY  F+
Sbjct:  905 MDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHVLNVLVSSGADAQICVWSSDGWEKQRNRFLQIPSGRTPSSQSDTRVQFHQDQIHFLVVHETQLAIYEATKLECVKQWIPRESAASISHATFSCDSQLVYASFL 1041          
BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy Swiss-Prot
Match: TPR1_ARATH (Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3)

HSP 1 Score: 189.889 bits (481), Expect = 1.215e-54
Identity = 85/137 (62.04%), Postives = 112/137 (81.75%), Query Frame = 1
Query:    1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASASISHATFSCDSLLVYTGFV 411
            M+DST+ IYNVR+DEVKSKL+GHSKRITGLAFS +LN+LVSSGADAQ+ VW+ + WE++    LQ P GR+ ++ SDT++QFHQDQ   L V+ETQ+AIY+  K+EC+KQ  + E++A I+HATFSCDS L+YT F+
Sbjct:  885 MDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQWPVRESAAPITHATFSCDSQLIYTSFM 1021          
BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy Swiss-Prot
Match: TPL_ARATH (Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.240e-53
Identity = 86/137 (62.77%), Postives = 109/137 (79.56%), Query Frame = 1
Query:    1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASASISHATFSCDSLLVYTGFV 411
            M+DST+ IYNVR+DEVKSKL+GHSKRITGLAFS +LN+LVSSGADAQ+ VW+ + WE++    L  P GR  +A SDT++QFHQDQ   L V+ETQ+AIY+  K+EC+KQ A+ E+ A I+HATFSCDS LVY  F+
Sbjct:  896 MDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWEKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQWAVRESLAPITHATFSCDSQLVYASFM 1032          
BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy Swiss-Prot
Match: TPR3_ARATH (Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.154e-47
Identity = 80/137 (58.39%), Postives = 105/137 (76.64%), Query Frame = 1
Query:    1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEA-SASISHATFSCDSLLVYTGF 408
            MEDST++IYNVR+DEVKSKL+GH KRITGLAFS  LNILVSSGADAQI  W ++ WE++    +Q PAG+   A  DT++QFH DQ ++L V+ETQ+A++D  KMECI+Q    ++ SA IS A ++C+S L+YT F
Sbjct:  881 MEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTALNILVSSGADAQICFWSIDTWEKRKSVAIQMPAGK--AANGDTRVQFHVDQLRILVVHETQLAVFDASKMECIRQWIPQDSLSAPISSAVYACNSQLIYTTF 1015          
BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy Swiss-Prot
Match: TPR2_ARATH (Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 4.694e-46
Identity = 79/137 (57.66%), Postives = 101/137 (73.72%), Query Frame = 1
Query:    1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEA-SASISHATFSCDSLLVYTGF 408
            MEDS+++IYNVR+DEVK+KL+GH K ITGLAFS  LNILVSSGADAQ+  W  ++WE+K    +Q P G+ P    DT++QFH DQ QLL  +ETQ+AIYD  KMECI +    EA S+ I+ A++SC+S LVY  F
Sbjct:  892 MEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFFWTADSWEKKKSSAIQLPPGKAPVG--DTRVQFHNDQIQLLVSHETQLAIYDASKMECIHKWVPQEALSSPITSASYSCNSQLVYASF 1026          
BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy Swiss-Prot
Match: TPR4_ARATH (Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 5.435e-44
Identity = 70/136 (51.47%), Postives = 102/136 (75.00%), Query Frame = 1
Query:    1 MEDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASASISHATFSCDSLLVYTGF 408
            M+DS++ IYNVR+DEVKSKL+GH KR+TGLAFS +LN+LVSSGAD+Q+ VW ++ WE++    +Q P+G +P   + T++QFHQDQ  +L V+ +Q+AIY+  K+E +KQ    E+S S++ A +SCDS  +Y  F
Sbjct:  906 MDDSSIQIYNVRVDEVKSKLKGHQKRVTGLAFSNVLNVLVSSGADSQLCVWSMDGWEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHVLVVHASQLAIYEAPKLENMKQWIPKESSGSVTDAVYSCDSQSIYAAF 1041          
BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy Swiss-Prot
Match: GBLP_LEIIN (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania infantum GN=LACK1 PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 6.841e-8
Identity = 36/135 (26.67%), Postives = 65/135 (48.15%), Query Frame = 1
Query:    7 DSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASAS--ISHATFSCDSLLVYTG 405
            D+T+ ++NV   + +  L+GHS  ++ +  SP  ++  S G D   ++WDL+  E+     ++SP           QI F  ++  +    E  +++YD+     I +L    A  S  IS A +S D   +Y+G
Sbjct:  173 DNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQLFKINVESPI---------NQIAFSPNRFWMCVATERSLSVYDLESKAVIAELTPDGAKPSECISIA-WSADGNTLYSG 297          
BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy Swiss-Prot
Match: GBLP_LEICH (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania chagasi PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 6.841e-8
Identity = 36/135 (26.67%), Postives = 65/135 (48.15%), Query Frame = 1
Query:    7 DSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASAS--ISHATFSCDSLLVYTG 405
            D+T+ ++NV   + +  L+GHS  ++ +  SP  ++  S G D   ++WDL+  E+     ++SP           QI F  ++  +    E  +++YD+     I +L    A  S  IS A +S D   +Y+G
Sbjct:  173 DNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQLFKINVESPI---------NQIAFSPNRFWMCVATERSLSVYDLESKAVIAELTPDGAKPSECISIA-WSADGNTLYSG 297          
BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy Swiss-Prot
Match: GBLP_LEIMA (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania major PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 7.731e-8
Identity = 36/135 (26.67%), Postives = 65/135 (48.15%), Query Frame = 1
Query:    7 DSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVNETQIAIYDMRKMECIKQLAIGEASAS--ISHATFSCDSLLVYTG 405
            D+T+ ++NV   + +  L+GHS  ++ +  SP  ++  S G D   ++WDL+  E+     ++SP           QI F  ++  +    E  +++YD+     I +L    A  S  IS A +S D   +Y+G
Sbjct:  173 DNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQLFKINVESPI---------NQIGFSPNRFWMCVATERSLSVYDLESKAVIAELTPDGAKPSECISIA-WSADGNTLYSG 297          
BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy Swiss-Prot
Match: WDR5_DICDI (WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 4.209e-7
Identity = 33/135 (24.44%), Postives = 66/135 (48.89%), Query Frame = 1
Query:    4 EDSTVYIYNVRLDEVKSKLRGHSKRITGLAFSPLLNILVSSGADAQIIVWDLNNWERKNGCYLQSPAGRTPTARSDTQIQFHQDQTQLLAVN-ETQIAIYDMRKMECIKQLAIGEASASISHATFSCDSLLVYTG 405
            +D T+ I++V   ++   L+GH + + G++F+P  N++VS   D  + +WD+N  E    C     A   P     T + F++D T +++ + +  + I+D    + +  ++  E    +S   FS +   V  G
Sbjct:  108 DDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNLIVSGSFDENVRIWDVNTGE----CTKMISAHSDPV----TGVHFNRDGTLVVSGSYDGTVRIWDTTTGQLLNTIST-EDGKEVSFVKFSPNGKFVLAG 233          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2TEK2_GOSRA3.740e-8697.81Uncharacterized protein OS=Gossypium raimondii GN=... [more]
B9HAH3_POPTR3.619e-6070.07WD-40 repeat family protein OS=Populus trichocarpa... [more]
B9IL09_POPTR3.478e-5870.80WD-40 repeat family protein OS=Populus trichocarpa... [more]
B9N190_POPTR2.941e-5666.42WD-40 repeat family protein OS=Populus trichocarpa... [more]
M0SMK9_MUSAM6.723e-5667.15Uncharacterized protein OS=Musa acuminata subsp. m... [more]
D7TZB7_VITVI1.635e-5566.42Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A067EEH6_CITSI2.078e-5563.50Uncharacterized protein (Fragment) OS=Citrus sinen... [more]
U5GP80_POPTR2.376e-5563.50Uncharacterized protein OS=Populus trichocarpa GN=... [more]
A0A067EAS9_CITSI3.417e-5563.50Uncharacterized protein (Fragment) OS=Citrus sinen... [more]
W9RBZ1_9ROSA3.487e-5565.69Protein TOPLESS OS=Morus notabilis GN=L484_025714 ... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0001983 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
TPR1_ARATH1.215e-5462.04Topless-related protein 1 OS=Arabidopsis thaliana ... [more]
TPL_ARATH1.240e-5362.77Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=... [more]
TPR3_ARATH4.154e-4758.39Topless-related protein 3 OS=Arabidopsis thaliana ... [more]
TPR2_ARATH4.694e-4657.66Topless-related protein 2 OS=Arabidopsis thaliana ... [more]
TPR4_ARATH5.435e-4451.47Topless-related protein 4 OS=Arabidopsis thaliana ... [more]
GBLP_LEIIN6.841e-826.67Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_LEICH6.841e-826.67Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_LEIMA7.731e-826.67Guanine nucleotide-binding protein subunit beta-li... [more]
WDR5_DICDI4.209e-724.44WD repeat-containing protein 5 homolog OS=Dictyost... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 13..52
e-value: 7.3E-7
score: 38.8
IPR001680WD40 repeatPFAMPF00400WD40coord: 18..52
e-value: 2.3E-5
score: 24.9
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 20..55
score: 14.485
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 2..135
e-value: 2.1E-19
score: 68.6
IPR027728Topless familyPANTHERPTHR22847:SF480PROTEIN TOPLESS-RELATEDcoord: 1..137
NoneNo IPR availablePANTHERPTHR22847WD40 REPEAT PROTEINcoord: 1..137
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 39..53
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..61
score: 15.9
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 2..135

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0001983 ID=g.arboreum_cottongen_reftransV1_0001983; Name=g.arboreum_cottongen_reftransV1_0001983; organism=Gossypium arboreum; type=contig; length=411bp
ATGGAGGATTCCACGGTTTACATCTACAATGTTCGTCTAGATGAGGTCAA
GAGCAAGCTTAGGGGTCACTCTAAGAGAATTACTGGTCTTGCCTTTTCCC
CTCTGTTGAATATACTAGTTTCTTCTGGAGCTGATGCCCAGATCATTGTA
TGGGACTTGAATAATTGGGAAAGGAAGAATGGATGCTATTTGCAATCTCC
AGCAGGAAGGACACCTACAGCAAGGTCAGACACCCAGATACAGTTTCACC
AGGATCAGACACAGTTGCTCGCTGTAAACGAAACTCAAATTGCCATATAT
GACATGAGGAAAATGGAGTGTATAAAGCAGTTGGCTATAGGAGAAGCTTC
AGCATCAATCTCCCATGCAACATTTTCATGTGATAGCCTGTTAGTGTACA
CCGGTTTCGTG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_rpt
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR027728Topless_fam
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of DNA-templated transcription