g.arboreum_cottongen_reftransV1_0013038, g.arboreum_cottongen_reftransV1_0013038 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0013038
Unique Name	g.arboreum_cottongen_reftransV1_0013038
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	513

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr12	chromosome	g.arboreum_cottongen_reftransV1_0013038:1..513 . Chr12:121744077..121744589 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

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BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: A0A0B0PGJ9_GOSAR (Cleavage and polyadenylation specificity factor subunit OS=Gossypium arboreum GN=F383_09226 PE=4 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 5.414e-95
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1

Query:    1 TGGPQGASQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXXXXXXXXXXXXNEGFGKGGNMNYQ 468
            TGGPQGASQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDQGQPQVQPQGRRPNEGFGKGGNMNYQ
Sbjct:  190 TGGPQGASQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDQGQPQVQPQGRRPNEGFGKGGNMNYQ 345

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BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: A0A0D2W0D0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G173800 PE=4 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 7.377e-95
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1

Query:    1 TGGPQGASQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXXXXXXXXXXXXNEGFGKGGNMNYQ 468
            TGGPQGASQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDQGQPQVQPQGRRPNEGFGKGGNMNYQ
Sbjct:  190 TGGPQGASQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDQGQPQVQPQGRRPNEGFGKGGNMNYQ 345

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: A0A061E6X2_THECC (RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_010663 PE=4 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 1.230e-88
Identity = 143/156 (91.67%), Postives = 150/156 (96.15%), Query Frame = 1

Query:    1 TGGPQGASQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXXXXXXXXXXXXNEGFGKGGNMNYQ 468
            TGGPQGA  VPPNQMG+NVNHPM++ENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYD ASAAACKEGM+GYMFNGRACVVAFASPQTLKQMGASYMNK+QGQ Q QPQGRRPN+G G+GGNMNYQ
Sbjct:  194 TGGPQGAPHVPPNQMGLNVNHPMISENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDPASAAACKEGMDGYMFNGRACVVAFASPQTLKQMGASYMNKNQGQSQAQPQGRRPNDGLGRGGNMNYQ 349

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: A0A061E722_THECC (RNA-binding family protein isoform 6 OS=Theobroma cacao GN=TCM_010664 PE=4 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 6.114e-86
Identity = 139/156 (89.10%), Postives = 147/156 (94.23%), Query Frame = 1

Query:    1 TGGPQGASQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXXXXXXXXXXXXNEGFGKGGNMNYQ 468
            TGGPQG   VPPNQMG NVNHP+MNENQV+PPIENGPTMLFVGELHWWTTDAELESVLSQYGR+KEIKFFDE+ASGKSKGYCQVEFYD +SAA CKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNK+QGQ Q QPQGRRPNEG G+GGN+NYQ
Sbjct:  194 TGGPQGPPHVPPNQMGTNVNHPVMNENQVQPPIENGPTMLFVGELHWWTTDAELESVLSQYGRLKEIKFFDEKASGKSKGYCQVEFYDPSSAAVCKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKNQGQSQAQPQGRRPNEGLGRGGNLNYQ 349

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: A0A061E6X5_THECC (RNA-binding family protein isoform 5 (Fragment) OS=Theobroma cacao GN=TCM_010664 PE=4 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 9.766e-86
Identity = 139/156 (89.10%), Postives = 147/156 (94.23%), Query Frame = 1

Query:    1 TGGPQGASQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXXXXXXXXXXXXNEGFGKGGNMNYQ 468
            TGGPQG   VPPNQMG NVNHP+MNENQV+PPIENGPTMLFVGELHWWTTDAELESVLSQYGR+KEIKFFDE+ASGKSKGYCQVEFYD +SAA CKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNK+QGQ Q QPQGRRPNEG G+GGN+NYQ
Sbjct:  194 TGGPQGPPHVPPNQMGTNVNHPVMNENQVQPPIENGPTMLFVGELHWWTTDAELESVLSQYGRLKEIKFFDEKASGKSKGYCQVEFYDPSSAAVCKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKNQGQSQAQPQGRRPNEGLGRGGNLNYQ 349

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: A0A061E718_THECC (RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_010664 PE=4 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.030e-85
Identity = 139/156 (89.10%), Postives = 147/156 (94.23%), Query Frame = 1

Query:    1 TGGPQGASQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXXXXXXXXXXXXNEGFGKGGNMNYQ 468
            TGGPQG   VPPNQMG NVNHP+MNENQV+PPIENGPTMLFVGELHWWTTDAELESVLSQYGR+KEIKFFDE+ASGKSKGYCQVEFYD +SAA CKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNK+QGQ Q QPQGRRPNEG G+GGN+NYQ
Sbjct:  194 TGGPQGPPHVPPNQMGTNVNHPVMNENQVQPPIENGPTMLFVGELHWWTTDAELESVLSQYGRLKEIKFFDEKASGKSKGYCQVEFYDPSSAAVCKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKNQGQSQAQPQGRRPNEGLGRGGNLNYQ 349

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: A0A061EER0_THECC (RNA-binding family protein isoform 4 OS=Theobroma cacao GN=TCM_010664 PE=4 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 1.555e-85
Identity = 139/156 (89.10%), Postives = 147/156 (94.23%), Query Frame = 1

Query:    1 TGGPQGASQVPPNQMGMNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXXXXXXXXXXXXNEGFGKGGNMNYQ 468
            TGGPQG   VPPNQMG NVNHP+MNENQV+PPIENGPTMLFVGELHWWTTDAELESVLSQYGR+KEIKFFDE+ASGKSKGYCQVEFYD +SAA CKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNK+QGQ Q QPQGRRPNEG G+GGN+NYQ
Sbjct:  194 TGGPQGPPHVPPNQMGTNVNHPVMNENQVQPPIENGPTMLFVGELHWWTTDAELESVLSQYGRLKEIKFFDEKASGKSKGYCQVEFYDPSSAAVCKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKNQGQSQAQPQGRRPNEGLGRGGNLNYQ 349

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: F6GVJ6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0137g00270 PE=4 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 7.352e-74
Identity = 120/158 (75.95%), Postives = 132/158 (83.54%), Query Frame = 1

Query:    1 TGGPQGASQVPPNQMGMNVN--HPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXXXXXXXXXXXXNEGFGKGGNMNYQ 468
            TGGP+   Q+  NQMGMNVN   PM+NENQ+RP ++NG TMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYD+++AAACKEGMNGY+FNGRACVVAFASPQTLKQMGASYMNK           R  N+G G+GG MN Q
Sbjct:  190 TGGPRAVPQMLSNQMGMNVNVNRPMVNENQIRPAVDNGATMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDASAAAACKEGMNGYIFNGRACVVAFASPQTLKQMGASYMNK-TQAQSQSQGRRPMNDGVGRGGGMNMQ 346

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: M5XN02_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002814mg PE=4 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 9.177e-73
Identity = 121/159 (76.10%), Postives = 135/159 (84.91%), Query Frame = 1

Query:    1 TGGPQGASQVPPNQMGM--NVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXXXXXXX-XXXXXNEGFGKGGNMNYQ 468
            T GP G +Q+P NQ+ +  N N PM NENQ+RPP+ENG TMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEF+D A+A ACKEGM+GY+FNGRACVVAFASPQTLKQMGASY++K QGQ Q Q    R  NEG G+GG +NYQ
Sbjct:  165 TAGPTGVTQMPTNQISIKVNANRPMFNENQIRPPVENGSTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFHDPAAATACKEGMDGYLFNGRACVVAFASPQTLKQMGASYLSKSQGQTQSQQPGRRPMNEGVGRGGGVNYQ 323

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BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Match: V4VFX3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030915mg PE=4 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 3.991e-69
Identity = 123/157 (78.34%), Postives = 137/157 (87.26%), Query Frame = 1

Query:    7 GPQGASQVPPNQMG--MNVNHPMMNENQVRPPIENGPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKDXXX-XXXXXXXXXXNEGFGKGGNMNYQ 468
            GPQGA  +P NQMG  +NVN  M+NENQ+RPP+ENG TMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEF+D+A+AAACK+GMNG++FNGR CVVAFASPQTLKQMGASYMNK+QGQ        R  N+G G+GGNMNYQ
Sbjct:  197 GPQGA-LIPANQMGVNINVNRAMVNENQIRPPLENGGTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFFDAAAAAACKDGMNGHVFNGRPCVVAFASPQTLKQMGASYMNKNQGQPQSQTQGRRPMNDGGGRGGNMNYQ 352

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Match: CPSF6_DROME (Cleavage and polyadenylation specificity factor subunit CG7185 OS=Drosophila melanogaster GN=CG7185 PE=1 SV=2)

HSP 1 Score: 65.0846 bits (157), Expect = 2.864e-11
Identity = 34/92 (36.96%), Postives = 52/92 (56.52%), Query Frame = 1

Query:  109 PTM-----LFVGELHWWTTDAELESVLSQYG--RVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQ 363
            PTM     L+VG L WWTTD ++ + L   G   ++E+KFF+ RA+G+SKG+  +     +S  A  + +     +G+A VV + S Q L Q
Sbjct:   87 PTMNRRYQLYVGNLTWWTTDQDIANSLRDIGVSDLQEVKFFENRANGQSKGFSVISLGSESSLRAVLDQLPKKEMHGQAPVVTYPSKQALTQ 178

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 4.117e-11
Identity = 31/71 (43.66%), Postives = 41/71 (57.75%), Query Frame = 1

Query:  121 FVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVV 333
            FVG L W T D  LE+  SQYG V + K  ++R +G+S+G+  V F D  S     EGMNG   +GR+  V
Sbjct:   11 FVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITV 81

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Match: RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2)

HSP 1 Score: 62.003 bits (149), Expect = 2.931e-10
Identity = 30/95 (31.58%), Postives = 50/95 (52.63%), Query Frame = 1

Query:  106 GPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKD 390
            GP  L+VG LH+  T+  L  +   +GR++ I+   +  +G+SKGY  + F DS  A    E +NG+   GR   V   + +T     +S+++ D
Sbjct:  248 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSD 342

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Match: RBM39_HUMAN (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2)

HSP 1 Score: 62.003 bits (149), Expect = 2.931e-10
Identity = 30/95 (31.58%), Postives = 50/95 (52.63%), Query Frame = 1

Query:  106 GPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKD 390
            GP  L+VG LH+  T+  L  +   +GR++ I+   +  +G+SKGY  + F DS  A    E +NG+   GR   V   + +T     +S+++ D
Sbjct:  248 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSD 342

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Match: RBM39_PONAB (RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 3.181e-10
Identity = 30/95 (31.58%), Postives = 50/95 (52.63%), Query Frame = 1

Query:  106 GPTMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVVAFASPQTLKQMGASYMNKD 390
            GP  L+VG LH+  T+  L  +   +GR++ I+   +  +G+SKGY  + F DS  A    E +NG+   GR   V   + +T     +S+++ D
Sbjct:  248 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSD 342

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 3.963e-10
Identity = 29/71 (40.85%), Postives = 39/71 (54.93%), Query Frame = 1

Query:  121 FVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVV 333
            FVG L W T D  LE   SQ+G + + K  ++R +G+S+G+  V F D  S     EGMNG   +GR   V
Sbjct:    9 FVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITV 79

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Match: RBG7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=RBG7 PE=1 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 4.293e-10
Identity = 29/71 (40.85%), Postives = 41/71 (57.75%), Query Frame = 1

Query:  121 FVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVV 333
            FVG L W T D  LE+  +QYG V + K  ++R +G+S+G+  V F D  +     EGMNG   +GR+  V
Sbjct:   11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITV 81

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 4.559e-10
Identity = 30/71 (42.25%), Postives = 40/71 (56.34%), Query Frame = 1

Query:  121 FVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVV 333
            FVG L W T DAELE   SQ+G V + K  ++R +G+S+G+  V F D  S     + MNG   +GR   V
Sbjct:    9 FVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITV 79

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Match: RBG2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=RBG2 PE=1 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 8.593e-10
Identity = 28/74 (37.84%), Postives = 39/74 (52.70%), Query Frame = 1

Query:  112 TMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVV 333
            T LF+G L W T DA L    + +G V + K   +R +G+S+G+  V F D  +A A    M+G   NGR   V
Sbjct:   35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRV 108

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 1.138e-9
Identity = 28/71 (39.44%), Postives = 41/71 (57.75%), Query Frame = 1

Query:  121 FVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDSASAAACKEGMNGYMFNGRACVV 333
            FVG L W T +  LE+  SQ+G + + K  ++R +G+S+G+  V F D  S     EGMNG   +GR+  V
Sbjct:   11 FVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITV 81

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0PGJ9_GOSAR	5.414e-95	100.00	Cleavage and polyadenylation specificity factor su...	[more]
A0A0D2W0D0_GOSRA	7.377e-95	100.00	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061E6X2_THECC	1.230e-88	91.67	RNA-binding family protein isoform 1 OS=Theobroma ...	[more]
A0A061E722_THECC	6.114e-86	89.10	RNA-binding family protein isoform 6 OS=Theobroma ...	[more]
A0A061E6X5_THECC	9.766e-86	89.10	RNA-binding family protein isoform 5 (Fragment) OS...	[more]
A0A061E718_THECC	1.030e-85	89.10	RNA-binding family protein isoform 1 OS=Theobroma ...	[more]
A0A061EER0_THECC	1.555e-85	89.10	RNA-binding family protein isoform 4 OS=Theobroma ...	[more]
F6GVJ6_VITVI	7.352e-74	75.95	Putative uncharacterized protein OS=Vitis vinifera...	[more]
M5XN02_PRUPE	9.177e-73	76.10	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
V4VFX3_9ROSI	3.991e-69	78.34	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]

Pages

BLAST of g.arboreum_cottongen_reftransV1_0013038 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
CPSF6_DROME	2.864e-11	36.96	Cleavage and polyadenylation specificity factor su...	[more]
GRP1_SINAL	4.117e-11	43.66	Glycine-rich RNA-binding protein GRP1A OS=Sinapis ...	[more]
RBM39_MOUSE	2.931e-10	31.58	RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE...	[more]
RBM39_HUMAN	2.931e-10	31.58	RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE...	[more]
RBM39_PONAB	3.181e-10	31.58	RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE...	[more]
GRP1_DAUCA	3.963e-10	40.85	Glycine-rich RNA-binding protein OS=Daucus carota ...	[more]
RBG7_ARATH	4.293e-10	40.85	Glycine-rich RNA-binding protein 7 OS=Arabidopsis ...	[more]
GRP10_BRANA	4.559e-10	42.25	Glycine-rich RNA-binding protein 10 OS=Brassica na...	[more]
RBG2_ARATH	8.593e-10	37.84	Glycine-rich RNA-binding protein 2, mitochondrial ...	[more]
GRP2_SINAL	1.138e-9	39.44	Glycine-rich RNA-binding protein GRP2A OS=Sinapis ...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 25..98 e-value: 1.3E-19 score: 81.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 26..94 e-value: 3.3E-17 score: 61.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 24..102 score: 14.368
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	3.30.70.330		coord: 11..137 e-value: 1.6E-25 score: 89.0
IPR012677	Nucleotide-binding alpha-beta plait domain	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 8..130
None	No IPR available	PANTHER	PTHR24012:SF425	F3F19.21 PROTEIN	coord: 23..107 coord: 129..157
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 23..107 coord: 129..157

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0013038 ID=g.arboreum_cottongen_reftransV1_0013038; Name=g.arboreum_cottongen_reftransV1_0013038; organism=Gossypium arboreum; type=contig; length=513bp
ACTGGTGGTCCTCAAGGAGCTTCACAGGTTCCGCCTAATCAAATGGGTAT
GAATGTAAATCATCCTATGATGAATGAAAATCAGGTTCGGCCACCTATAG
AGAATGGTCCAACAATGCTGTTTGTTGGTGAGTTACATTGGTGGACAACT
GATGCAGAGCTTGAGAGCGTTTTATCTCAATATGGAAGGGTGAAGGAGAT
TAAGTTCTTTGATGAGAGAGCTAGTGGCAAATCCAAAGGCTATTGTCAAG
TTGAGTTCTATGATTCAGCATCTGCAGCTGCATGTAAAGAGGGAATGAAT
GGTTATATGTTCAATGGTCGAGCTTGCGTTGTGGCTTTTGCTTCACCACA
AACATTGAAGCAGATGGGAGCGTCTTATATGAACAAAGACCAAGGCCAGC
CTCAAGTACAGCCTCAAGGAAGGAGGCCAAATGAAGGTTTTGGGAAAGGT
GGTAATATGAATTACCAAGGTGGGGATGCAGGTAGGAACTATGGAAGGGG
TGGCTGGGGACGG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

Search form

g.arboreum_cottongen_reftransV1_0013038, g.arboreum_cottongen_reftransV1_0013038 (contig) Gossypium arboreum

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