g.arboreum_cottongen_reftransV1_0012685, g.arboreum_cottongen_reftransV1_0012685 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0012685
Unique Nameg.arboreum_cottongen_reftransV1_0012685
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1356
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr11chromosomeg.arboreum_cottongen_reftransV1_0012685:1..1356 .
Chr11:103808052..103809407 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: A0A0D2NJR5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G006500 PE=4 SV=1)

HSP 1 Score: 590.112 bits (1520), Expect = 0.000e+0
Identity = 342/353 (96.88%), Postives = 344/353 (97.45%), Query Frame = 3
Query:   54 MAKNMGVAGAAASSELNVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKILADADHHTSSXXXXXXXXXXXDDASHQXXXXXXXXXGRIHDVQYMDNQEHINDSNSEADRKHEINANISXXXXXXXXXXXCPXXXXXXXXXXXXSLAA 1112
            MAKNMGVA AAA SELNVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFL SGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKILADADHHTSSKEEKQEVEEEEDD SHQ   KKKKNKGRIHDVQYMD++EHINDSNSEAD KHEINANISTKKKKTALKKLC IDIKVKDKKKKKSLAA
Sbjct:    1 MAKNMGVAVAAALSELNVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLGSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKILADADHHTSSKEEKQEVEEEEDDTSHQ-KTKKKKNKGRIHDVQYMDDREHINDSNSEADGKHEINANISTKKKKTALKKLCSIDIKVKDKKKKKSLAA 352          
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: A0A0D2Q182_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G006500 PE=4 SV=1)

HSP 1 Score: 461.84 bits (1187), Expect = 3.109e-158
Identity = 227/232 (97.84%), Postives = 227/232 (97.84%), Query Frame = 3
Query:   54 MAKNMGVAGAAASSELNVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSF 749
            MAKNMGVA AAA SELNVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFL SGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIR  
Sbjct:    1 MAKNMGVAVAAALSELNVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLGSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRKL 232          

HSP 2 Score: 68.5514 bits (166), Expect = 1.119e-9
Identity = 32/35 (91.43%), Postives = 35/35 (100.00%), Query Frame = 1
Query:  943 FSTWIIKNILMTLTLRLIENMKSMRISQPRKRRLH 1047
            FSTW+I+NILMTLTLRL+ENMKSMRISQPRKRRLH
Sbjct:  256 FSTWMIENILMTLTLRLMENMKSMRISQPRKRRLH 290          
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: A0A061DJ97_THECC (Ribosomal protein L1p/L10e family, putative OS=Theobroma cacao GN=TCM_001556 PE=4 SV=1)

HSP 1 Score: 437.573 bits (1124), Expect = 1.079e-147
Identity = 244/305 (80.00%), Postives = 271/305 (88.85%), Query Frame = 3
Query:  102 NVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIID---DPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKILADADHHTSSXXXXXXXXXXXDDASHQXXXXXXXXXGRIHDVQYMDNQEHINDSNSEADRKHE 1007
             VEKAVNALLKWRDSQS +QKPQLLEQDE LYLIVSLKKIPQK RVNP KVPLPHP+ID   DPAELCL IDDRSKSG+TKDAASKKIKSENIPI+KVIKLSKLKTDY+ FEAKRKLCDSYDMFFADKRI+PLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIH   +SA+LFLS+GTC VVKV KLS++KKEIV+NV AAI+GIAE VPSKWGNIRSFHLKLLDSLALPL+QA+PDLRLKILA+AD+ +    E+++ EE   DAS+QK KK KK+KGRIH+VQYMD  E+ ND++S A RK E
Sbjct:   23 TVEKAVNALLKWRDSQSHSQKPQLLEQDELLYLIVSLKKIPQKPRVNPHKVPLPHPLIDPSTDPAELCLVIDDRSKSGLTKDAASKKIKSENIPISKVIKLSKLKTDYRAFEAKRKLCDSYDMFFADKRILPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHKGYASALLFLSTGTCSVVKVGKLSMDKKEIVDNVTAAIHGIAEIVPSKWGNIRSFHLKLLDSLALPLYQAVPDLRLKILAEADNPSKEVLEEKQEEE---DASYQKKKKHKKSKGRIHEVQYMD--ENSNDTDSGAKRKDE 322          
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: W9RT08_9ROSA (Ribosomal L1 domain-containing protein 1 OS=Morus notabilis GN=L484_021401 PE=4 SV=1)

HSP 1 Score: 379.793 bits (974), Expect = 4.760e-124
Identity = 188/292 (64.38%), Postives = 231/292 (79.11%), Query Frame = 3
Query:   84 AASSELNVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPI-IDDPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKILADADHHTSSXXXXXXXXXXXDDASHQXXXXXXXXXGRIHDVQYMD 956
            A  S   V++AVN+LLKWR+S+SQ Q PQLL+ DEF+YLI++LKKIP K R+N  K+PLPHP+   + +ELCLFIDDR KSG+TKD A KKIKSE IP++KV+KLSKLK+DY+PFEAKRKLCDSYDMFFADKR++PLLPRLLGK FFKK+KIPVPVDLKH NWKEQI  AC SA+LFL +GTC VV+VAK S+   EI EN +AAINGIAE VP KWGN+RSFHLKLL+S+ALP++QA+PD++LKI    +      E+ +  +   +D    K KKK     RIH+V+YMD
Sbjct:   18 ARMSPKTVQRAVNSLLKWRNSKSQTQNPQLLDDDEFVYLILTLKKIPSKDRINAHKIPLPHPLHAGESSELCLFIDDRPKSGLTKDDAMKKIKSEGIPVSKVLKLSKLKSDYRPFEAKRKLCDSYDMFFADKRVVPLLPRLLGKHFFKKRKIPVPVDLKHQNWKEQIEKACGSALLFLRTGTCSVVRVAKASMGAAEIAENAMAAINGIAEIVPRKWGNVRSFHLKLLESVALPVYQALPDIKLKIEGIKEDEEKKTEKGEGDKRVGEDEKAGKKKKKG----RIHEVRYMD 305          
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: A0A067F0Q1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014066mg PE=4 SV=1)

HSP 1 Score: 379.022 bits (972), Expect = 9.123e-124
Identity = 189/299 (63.21%), Postives = 237/299 (79.26%), Query Frame = 3
Query:   75 AGAAASSELNVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPII----DDPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKILADADHHTSSXXXXXXXXXXXDDASHQXXXXXXXXXGRIHDVQYMDN 959
            AG+  S +  VE+AV ALLKW  S SQ QKPQLLEQD+F+YLI++LKKIPQ +R N  K+PLPH ++    D+P E+CL +DDR KS +TKDA  KKIK++N+PI KVIK++KLKTDY+PFEAKRKLCDSYD+F ADKR++PLLP+LLGK FFKKKKIPVPVDLKH NWKEQI   C SA+L+L +GTC V+KV K+S+  ++I ENVIAAING+AE VP KWGN+RSFHLKLL+SLALP++QA+PDL+LKI    ++    +++  E E  ED   H   KK KK KGRIH+V+YMD+
Sbjct:   15 AGSRVSPK-TVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLPHSLLGNDSDNPPEICLIMDDRPKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLKLLESLALPVYQAVPDLKLKIEGVKENEGEGQDKDSEKENAEDVNDHGSKKKLKKKKGRIHEVRYMDS 312          
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: V4SRI4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031604mg PE=4 SV=1)

HSP 1 Score: 376.711 bits (966), Expect = 7.594e-123
Identity = 189/299 (63.21%), Postives = 236/299 (78.93%), Query Frame = 3
Query:   75 AGAAASSELNVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPII----DDPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKILADADHHTSSXXXXXXXXXXXDDASHQXXXXXXXXXGRIHDVQYMDN 959
            AG+  S +  VE+AV ALLKW  S SQ QKPQLLEQD+F+YLI++LKK+PQ +R N  K+PLPH ++    D+P E+CL +DDR KS +TKDA  KKIK++N+PI KVIK++KLKTDY+PFEAKRKLCDSYDMF ADKR++PLLP+LLGK FFKKKKIPVPVDLKH NWKEQI   C SA+L+L +GTC V+KV K+S+  ++I ENVIAAING+AE VP KWGN+RSFHLKLL+SLALP++QA+PDL+LKI      +    ++K+  E  ED   H   KK KK KGRIH+V+YMD+
Sbjct:   15 AGSRVSPK-TVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKVPQVSRTNAFKIPLPHSLLGNDSDNPPEICLIMDDRPKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEAKRKLCDSYDMFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLKLLESLALPVYQAVPDLKLKIEG-VKENEGEGQDKESKENAEDVNDHGSKKKLKKKKGRIHEVRYMDS 311          
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: A0A067L5R8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22354 PE=4 SV=1)

HSP 1 Score: 366.696 bits (940), Expect = 1.347e-119
Identity = 175/250 (70.00%), Postives = 213/250 (85.20%), Query Frame = 3
Query:   84 AASSELNVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKA--RVNPIKVPLPHPIID---DPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKI 818
            +  S   +E+A+ ALLKWR ++S+ QKPQLLE DEF+YLI++LKKIPQK   RVNP KV LP+P+I+   D +ELCL IDDR KSG+TKDAA KKI+++NIPI+K+IKLSKLKTDY+PFEAKRKLCDSYDMFFAD+R+IPLLP++LGKQFFKKKKIPV VDLKH NWKEQI  AC S +LFLS+GTC VVKV ++S+ K+E+V NV+AAIN IAE VP KWG IRS HLKLL+SLALPL++A+PD +LKI
Sbjct:    8 SGVSPKTIERAIGALLKWRAAKSETQKPQLLESDEFVYLILTLKKIPQKGVSRVNPYKVSLPNPLINPQNDNSELCLIIDDRPKSGLTKDAAQKKIQNDNIPISKIIKLSKLKTDYRPFEAKRKLCDSYDMFFADRRVIPLLPKMLGKQFFKKKKIPVAVDLKHKNWKEQIDKACGSGLLFLSTGTCSVVKVGRVSMGKEEMVNNVVAAINEIAEIVPRKWGGIRSLHLKLLESLALPLYEALPDFKLKI 257          
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: V4L1Q6_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10006007mg PE=4 SV=1)

HSP 1 Score: 361.688 bits (927), Expect = 3.010e-117
Identity = 185/319 (57.99%), Postives = 233/319 (73.04%), Query Frame = 3
Query:  102 NVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPII---DDPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKILADADHHTSSXXXXXXXXXXXD----DASHQXXXXXXXXXG----RIHDVQYMD-NQEHINDSNSEADRKHEINANI 1022
             V+ AVNALLKWR  +S+ +KPQLLEQDEF+YLIV+LKKIPQ +R N  +V LPHP+I   +D  ELCL IDDR KSG+TKD A KKIKSENIP+ KV+KLSKLKTDY+PFEAKRKLCDSYDMFFAD+R+IPLLPRL+GK+FF +KKIPVPVDLKH NWKEQ+  AC SAM F+ +GTC V+KV KLS+E +EI ENV+  +NG+ E +P+KW  +RS HLKL +S+ALP++Q++PDL+LKI  DA     S  ++ + + + D    D S    K           RIH+V+YMD N   + D +   D   E+N  I
Sbjct:   28 TVDGAVNALLKWRSEKSKTEKPQLLEQDEFVYLIVTLKKIPQTSRTNAYRVLLPHPLINPAEDSPELCLIIDDRPKSGLTKDDAMKKIKSENIPVTKVLKLSKLKTDYRPFEAKRKLCDSYDMFFADRRVIPLLPRLIGKKFFARKKIPVPVDLKHKNWKEQMEKACGSAMFFMRTGTCSVIKVGKLSMESEEIAENVMETLNGVVEFLPNKWKYVRSLHLKLSESVALPIYQSVPDLKLKI--DAFDTEKSVVKEVKKKGKSDAVVVDGSESSEKSVAVKGKKKKGRIHEVRYMDSNVSEVLDEDEIGD--VEVNNEI 342          
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: D7LW62_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_486318 PE=4 SV=1)

HSP 1 Score: 358.992 bits (920), Expect = 3.901e-116
Identity = 183/292 (62.67%), Postives = 222/292 (76.03%), Query Frame = 3
Query:   93 SELNVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPII---DDPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKILADADHHTSSXXXXXXXXXXXDDASHQXXXXXXXXXGRIHDVQYMDN 959
            S   V  A+N L KWR  +S+ +KPQLLEQDE +YLI SLKKIPQ +R N  ++PLPHP+I   +D  ELCL IDDR KSG+TK    KKIKSENIPI KVIKLSKLKTDYK FEAKRKLCDSYDMFFAD+RIIPLLPR++GK+FF  KKIPV +DLKH NWK+QI  AC SAM F+ +GTC V+KV KLS+E  EI+ENV+A +NG+ E +P+KW  +RS HLKL +SLALP++Q++PDL+LKI A A   +  KEEK+   E  D      T K KK KGRIH+V+YMD+
Sbjct:   27 SPYTVGSALNGLTKWRSEKSKTEKPQLLEQDELVYLIASLKKIPQTSRTNAYRIPLPHPLINPTEDSPELCLIIDDRPKSGLTKADVMKKIKSENIPITKVIKLSKLKTDYKAFEAKRKLCDSYDMFFADRRIIPLLPRVIGKKFFTSKKIPVAIDLKHKNWKQQIEKACGSAMFFIRTGTCSVIKVGKLSMELNEIIENVMATLNGVVELLPNKWKYVRSLHLKLSESLALPIYQSVPDLKLKIDAFATGKSVVKEEKEGEVEAADGGEKSVTGKGKKKKGRIHEVRYMDS 318          
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: B9IDC0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s12760g PE=4 SV=1)

HSP 1 Score: 357.451 bits (916), Expect = 5.037e-116
Identity = 180/290 (62.07%), Postives = 224/290 (77.24%), Query Frame = 3
Query:  102 NVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKA--RVNPIKVPLPH----PIIDDPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKILADADHHTSSXXXXXXXXXXXDDASHQXXXXXXXXXGRIHDVQYM 953
             VEKAVNALLKWR S    QKPQLLEQDEF YLI++LKKIPQK   R+N  K+PLP+    P+I+ P E+CL IDDR KSG+ KDAA KKI+++N+PI+K+IK+SKLKTDY+PFEAKRKL DSYDMFFADKR++PLLP++LGKQFFKKKKIPV +DLKH+NWKEQI  AC SA+L+L SGTC VVKV ++S+ ++EI +NV+AAINGIA+ VP KWG +RSFHLKLLDSLALP++Q +PD +LKI        + +      EE+  +          K KGRI +V+YM
Sbjct:   16 TVEKAVNALLKWRSSTLNTQKPQLLEQDEFFYLILTLKKIPQKGVSRINAHKIPLPNSLINPLIEAP-EICLIIDDRPKSGLNKDAAKKKIQNDNLPISKIIKVSKLKTDYRPFEAKRKLRDSYDMFFADKRVVPLLPKMLGKQFFKKKKIPVTLDLKHHNWKEQIDKACGSALLYLRSGTCSVVKVGRVSMSREEIAKNVMAAINGIADIVPRKWGGVRSFHLKLLDSLALPVYQVVPDSKLKIDGGPKEQENDEGVVSVEEEKAKEGR------VGKKKGRIQEVRYM 298          
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: RL1D1_PONAB (Ribosomal L1 domain-containing protein 1 OS=Pongo abelii GN=RSL1D1 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 1.842e-35
Identity = 82/235 (34.89%), Postives = 137/235 (58.30%), Query Frame = 3
Query:  105 VEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRSKSGI--TKDAASKKIKSENI-PINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLS-SGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAM 797
            V KAV+ALL    S+ +     LL ++E L+L+V L KIP K     +++ LPH I  D  ++CLF  D   S    T+    K +    I  ++++I L  LK +YK +EAK +L  S+D F  D RI  LLP L+G+ F+++KK+PV V+L   N   +I++     +L +S SG+C  +++  + ++ + I+EN++A   G++E++P KW +++   +K   S ALP+F + 
Sbjct:   36 VRKAVDALLTHCKSR-KNNYGLLLNENESLFLMVVLWKIPSKELR--VRLTLPHSIRSDSEDICLFTKDEPNSTPEKTEQFYRKLLNKHGIKTVSQIISLQTLKKEYKSYEAKLRLLSSFDFFLTDARIRRLLPSLIGRHFYQRKKVPVSVNLLSKNLSREINDCIGGTVLNISKSGSCSAIRIGHVGMQIEHIIENIVAVTKGLSEKLPEKWESVKLLFVKTEKSAALPIFSSF 267          
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: RL1D1_HUMAN (Ribosomal L1 domain-containing protein 1 OS=Homo sapiens GN=RSL1D1 PE=1 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 1.842e-35
Identity = 82/235 (34.89%), Postives = 137/235 (58.30%), Query Frame = 3
Query:  105 VEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRSKSGI--TKDAASKKIKSENI-PINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLS-SGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAM 797
            V KAV+ALL    S+ +     LL ++E L+L+V L KIP K     +++ LPH I  D  ++CLF  D   S    T+    K +    I  ++++I L  LK +YK +EAK +L  S+D F  D RI  LLP L+G+ F+++KK+PV V+L   N   +I++     +L +S SG+C  +++  + ++ + I+EN++A   G++E++P KW +++   +K   S ALP+F + 
Sbjct:   36 VRKAVDALLTHCKSR-KNNYGLLLNENESLFLMVVLWKIPSKELR--VRLTLPHSIRSDSEDICLFTKDEPNSTPEKTEQFYRKLLNKHGIKTVSQIISLQTLKKEYKSYEAKLRLLSSFDFFLTDARIRRLLPSLIGRHFYQRKKVPVSVNLLSKNLSREINDCIGGTVLNISKSGSCSAIRIGHVGMQIEHIIENIVAVTKGLSEKLPEKWESVKLLFVKTEKSAALPIFSSF 267          
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: RL1D1_MOUSE (Ribosomal L1 domain-containing protein 1 OS=Mus musculus GN=Rsl1d1 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.145e-33
Identity = 73/212 (34.43%), Postives = 127/212 (59.91%), Query Frame = 3
Query:  171 LLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRSKSGITKDAASKKI-KSENI-PINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSS-GTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAM 797
            LL   E L+L+V L KIP+K     +KVPLPH I+ + +++CLF  D   S    +   KK+ K   +  I+++I    LKT+YK +EAK +L  S+++F  D RI   LP  +G+ F+++KK+PV V+L   N  ++I+   +  +L +S  G+C  +++    +E + IV+N++A    ++E++P KW +++   LK   S++LP+F + 
Sbjct:   57 LLSGSENLFLMVILWKIPEKELR--VKVPLPHSILSESSDVCLFTKDEFDSPEQTEGFYKKLLKKHGVNTISQIIPFKTLKTEYKAYEAKLRLLGSFEVFITDARIRRHLPSHIGRHFYQRKKVPVSVNLLAKNLSKEINRCITGTVLNISKRGSCSTIRIGHTGMETEHIVDNILAVSEMLSEKLPEKWQSVKLLFLKTEKSVSLPIFSSF 266          
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: RL1D1_BOVIN (Ribosomal L1 domain-containing protein 1 OS=Bos taurus GN=RSL1D1 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.133e-33
Identity = 82/238 (34.45%), Postives = 134/238 (56.30%), Query Frame = 3
Query:   96 ELNVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRS--KSGITKDAASKKIKSENI-PINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLS-SGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAM 797
            E  V+KAV ALL    S+  A    LL ++E  +L+V L KIP K     +++ LPH I  D A++CLF  D     S  T+    K + +  I  I+++I    LK +YK +EAK +L  S+D F  D RI  LLP  LG+ F+ +KK+PV V+L+      +I++     +L +S SG+C  +++    +  + IVENV+A    +++++P KW +++   +K   S++LP+F + 
Sbjct:   31 EEQVKKAVEALLAHSRSRKNANG-LLLNENENFFLMVVLWKIPSKELR--VRLSLPHGIRSDLADVCLFTKDEPNLSSEQTERYYKKLLNNHGIKTISQIIPFRTLKKEYKAYEAKLRLLGSFDFFITDARIRRLLPSHLGRHFYNRKKVPVSVNLQSKTLSREINDCIGGTVLNISKSGSCSTIRIGHTGMPIQHIVENVVAVAKSLSQKLPEKWESVKLLFVKTERSVSLPVFSSF 265          
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: RL1DB_SCHPO (Putative ribosome biogenesis protein C8F11.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC8F11.04 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.112e-28
Identity = 84/259 (32.43%), Postives = 140/259 (54.05%), Query Frame = 3
Query:   90 SSELNVEKAVNALLKWRDSQ-------SQAQKPQLLEQD----EFLYL-IVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDD--RSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAM--LFLSSGTCC--VVKVAKLSLEKKEIVENVIAAINGIAER-VPSKWGNIRSFHLKLLDSLALPLFQAMPDLR 809
             S+  +EK  +ALL++   +       S+++K  LLE +    E ++L + +LK I    ++ P K+ + +P+I   +E CL + D  R    +  +A   K+      + +VI LSKLK  +  +E KR+L D +D+F AD R+IP+LPR+LGK F++K K+PVPV +      EQ+     SA    + +S  C   ++K   +S    E+ ENV + +  +++  VP     I S HLK   S+A+PL+   P+L+
Sbjct:    8 GSDAPLEKVCSALLEYESKRKSSENIDSESKKTNLLEDEQDDIEPVWLQLATLKFIGNNRKLIPYKIAIKNPVIPSSSEACLIVKDPQRVYKDLVNEAGLSKV------VTRVIGLSKLKAKWNSYEQKRQLRDQFDIFLADDRVIPMLPRILGKTFYQKSKVPVPVKISKGT-AEQLKREVVSAYGATYFNSAPCSSFMIKCGHVSNTSTELAENVESILQFVSKHIVPDGAKGIASIHLKTSQSIAIPLWNN-PNLK 258          
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: RL1DA_SCHPO (Putative ribosome biogenesis protein C306.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC306.07c PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.041e-16
Identity = 63/237 (26.58%), Postives = 120/237 (50.63%), Query Frame = 3
Query:  105 VEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDL--KHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAER-VPSKWGNIRSFHLKLLDSLALPLFQAMPDL 806
            +EK + ALL+   S   + KP  +E+++    + + + + +++   P KV LPH I+    + CL + D  ++   +D   ++   E   I KV+ + +LK  YK    K +L DS+++F  D R++  +P L+GK F +KK  P P+ +  K    + Q+     S  L LS+GT   +     +   ++++EN+   +  +    +P  W  I +  +K  DS +LP++ +  +L
Sbjct:   22 LEKTIRALLQHIRS---SDKP--IEKEKVYIQVNTFQPVEKESLRRPSKVFLPHRIMH-VTDACLIVKDSQQT--YQDLVEQQGLDE--VITKVLSIPRLKLKYKTIREKCELRDSHNLFLVDDRVLKYIPLLMGKVFEQKKIKPFPISVLQKKETLRNQVARCLHSTYLKLSAGTSHTILCGLATQTNEQLLENITTVLKCLLTNFIPKGWSAIDNVAIKTADSASLPIWTSDTNL 248          
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: Y3096_DROME (Ribosomal L1 domain-containing protein CG13096 OS=Drosophila melanogaster GN=CG13096 PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.184e-9
Identity = 43/143 (30.07%), Postives = 71/143 (49.65%), Query Frame = 3
Query:  384 VIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWK--EQIHNACS-SAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLK--LLDSLALPLFQAM 797
            V+  ++L+ +   FEAKRK  +SYD    D R+       LGK   K + +   + L  +N K  +++  A + +A   LS G    V V    +  +++ EN++  I  + E  P    NIRS +LK  +  + ALPL+ +M
Sbjct:  372 VVPFNQLRNEMGSFEAKRKFLNSYDYLLCDGRLSGQATAFLGKNTQKPRNVLHSLRLSKDNDKLPQEVTRALTRTAFRQLSKGDLIAVPVGNHEITAEQLAENILLVIKQLQEVYPGGLANIRSMYLKIDITGTSALPLYVSM 514          
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: RL10A_CHLRE (60S ribosomal protein L10a OS=Chlamydomonas reinhardtii GN=RPL10A PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 2.252e-7
Identity = 31/103 (30.10%), Postives = 49/103 (47.57%), Query Frame = 3
Query:  450 SYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLK 758
            +Y  F A   +I  +PRLLG    K  K P P++    N +E + +   S    L    C  V VA + + + EI  N++ AIN +   +   W N+R  ++K
Sbjct:  104 AYHAFLASDSVIKQIPRLLGPGLNKAGKFPAPIN---KNLEEMVLDTKCSIKFQLKKVLCMGVAVANVGMTEGEIRTNIMYAINFLVSLLKKNWQNVRCLYIK 203          
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: R10A2_ARATH (60S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB PE=1 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 2.776e-7
Identity = 34/104 (32.69%), Postives = 50/104 (48.08%), Query Frame = 3
Query:  450 SYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLF-LSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLK 758
            SY  F A + +I  +PRLLG    K  K P  V   H    E   N   + + F L    C  V V  LS+E+K++ +NV  ++N +   +   W N+R  +LK
Sbjct:  105 SYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVS--HQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYLK 206          
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: R10A1_ARATH (60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=1 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 3.681e-7
Identity = 34/103 (33.01%), Postives = 49/103 (47.57%), Query Frame = 3
Query:  453 YDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLF-LSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLK 758
            Y  F A + +I  +PRLLG    K  K P  V   H    E   N   + + F L    C  V V  LS+E+K+I +NV  ++N +   +   W N+R  +LK
Sbjct:  106 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVS--HQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLK 206          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2NJR5_GOSRA0.000e+096.88Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2Q182_GOSRA3.109e-15897.84Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061DJ97_THECC1.079e-14780.00Ribosomal protein L1p/L10e family, putative OS=The... [more]
W9RT08_9ROSA4.760e-12464.38Ribosomal L1 domain-containing protein 1 OS=Morus ... [more]
A0A067F0Q1_CITSI9.123e-12463.21Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
V4SRI4_9ROSI7.594e-12363.21Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A067L5R8_JATCU1.347e-11970.00Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
V4L1Q6_EUTSA3.010e-11757.99Uncharacterized protein OS=Eutrema salsugineum GN=... [more]
D7LW62_ARALL3.901e-11662.67Putative uncharacterized protein OS=Arabidopsis ly... [more]
B9IDC0_POPTR5.037e-11662.07Uncharacterized protein OS=Populus trichocarpa GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RL1D1_PONAB1.842e-3534.89Ribosomal L1 domain-containing protein 1 OS=Pongo ... [more]
RL1D1_HUMAN1.842e-3534.89Ribosomal L1 domain-containing protein 1 OS=Homo s... [more]
RL1D1_MOUSE1.145e-3334.43Ribosomal L1 domain-containing protein 1 OS=Mus mu... [more]
RL1D1_BOVIN9.133e-3334.45Ribosomal L1 domain-containing protein 1 OS=Bos ta... [more]
RL1DB_SCHPO1.112e-2832.43Putative ribosome biogenesis protein C8F11.04 OS=S... [more]
RL1DA_SCHPO2.041e-1626.58Putative ribosome biogenesis protein C306.07c OS=S... [more]
Y3096_DROME1.184e-930.07Ribosomal L1 domain-containing protein CG13096 OS=... [more]
RL10A_CHLRE2.252e-730.1060S ribosomal protein L10a OS=Chlamydomonas reinha... [more]
R10A2_ARATH2.776e-732.6960S ribosomal protein L10a-2 OS=Arabidopsis thalia... [more]
R10A1_ARATH3.681e-733.0160S ribosomal protein L10a-1 OS=Arabidopsis thalia... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 265..289
NoneNo IPR availablePANTHERPTHR23105RIBOSOMAL PROTEIN L7AE FAMILY MEMBERcoord: 38..276
NoneNo IPR availablePANTHERPTHR23105:SF31RIBOSOMAL L1 DOMAIN-CONTAINING PROTEIN 1coord: 38..276
IPR016094Ribosomal protein L1, 2-layer alpha/beta-sandwichGENE3D3.30.190.20coord: 192..235
e-value: 1.1E-4
score: 21.4
IPR028364Ribosomal protein L1/ribosomal biogenesis proteinPFAMPF00687Ribosomal_L1coord: 41..239
e-value: 7.0E-62
score: 208.6
IPR016095Ribosomal protein L1, 3-layer alpha/beta-sandwichGENE3D3.40.50.790coord: 94..178
e-value: 1.1E-14
score: 53.8
IPR023674Ribosomal protein L1-likeSUPERFAMILY56808Ribosomal protein L1coord: 20..245

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0012685 ID=g.arboreum_cottongen_reftransV1_0012685; Name=g.arboreum_cottongen_reftransV1_0012685; organism=Gossypium arboreum; type=contig; length=1356bp
CGGCAGGGGAAAAAGTGAATAAAACCCTAGCAAAATAGAAAGAAAGAAGG
AAGATGGCGAAGAACATGGGAGTAGCGGGAGCGGCTGCTTCATCCGAATT
GAATGTGGAGAAGGCTGTGAATGCTCTGCTCAAATGGAGAGATTCTCAGT
CCCAAGCCCAAAAACCCCAACTTCTTGAACAGGATGAATTCCTATATCTC
ATCGTCAGCCTCAAGAAAATCCCTCAGAAGGCTCGCGTTAACCCCATCAA
AGTCCCTCTCCCTCACCCCATCATCGATGATCCCGCCGAGCTTTGCTTAT
TCATCGATGACCGCTCCAAGTCTGGTATCACAAAAGACGCTGCGTCTAAG
AAAATCAAGTCGGAAAACATACCCATCAACAAGGTCATTAAGCTGTCCAA
GCTCAAGACTGATTATAAGCCCTTCGAGGCCAAAAGGAAGCTTTGTGATT
CATATGATATGTTTTTCGCTGATAAGAGAATTATCCCACTTCTGCCTCGG
TTATTGGGGAAGCAGTTTTTCAAGAAGAAGAAGATTCCAGTGCCTGTTGA
CCTTAAGCATAACAACTGGAAGGAGCAGATCCATAATGCTTGTTCCTCTG
CTATGTTGTTCTTGAGTAGCGGGACTTGCTGTGTGGTGAAGGTGGCGAAG
CTTTCGTTGGAAAAGAAGGAGATTGTTGAAAACGTGATTGCTGCTATTAA
TGGGATTGCAGAGCGTGTGCCGAGCAAGTGGGGTAATATCAGGTCGTTTC
ATTTGAAGTTGCTCGATAGCTTGGCTTTACCTCTTTTTCAAGCTATGCCT
GATTTGCGTTTGAAGATTCTCGCTGATGCTGATCACCATACTTCTTCCAA
GGAGGAAAAACAAGAAGTTGAAGAAGAGGAAGACGATGCTTCCCATCAGA
AGACGAAGAAAAAGAAGAAAAACAAGGGGAGGATACACGACGTTCAGTAC
ATGGATAATCAAGAACATATTAATGACTCTAACTCTGAGGCTGATAGAAA
ACATGAAATCAATGCGAATATCTCAACCAAGAAAAAGAAGACTGCACTAA
AAAAGTTATGCCCTATTGACATCAAGGTCAAGGATAAGAAAAAGAAGAAA
AGTTTAGCAGCTTAATGATTTTTCTTACTTAGCACCTAGTAAACTTTAAG
TTCAATTTTACTGCTTCTTGTTCTTCCGGATTAGTACTCATTATTGTTTC
TTTTGTAATTGGTTTTACCTTTCAATTTTGGGTTGTTCTTGATCTTTTGA
AGGTCTATGTTATTTTTGAATGCTTCTTTACTTAGCTTTTTATTTGTATT
AGATTGTTAAGAATGAATTTGGAGCATGATTGCTGTAAGCAGCATTTGAA
TCTGAT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR016094Ribosomal_L1_2-a/b-sand
IPR028364Ribosomal_uL1/biogenesis
IPR016095Ribosomal_uL1_3-a/b-sand
IPR023674Ribosomal_uL1-like
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding