g.arboreum_cottongen_reftransV1_0014512, g.arboreum_cottongen_reftransV1_0014512 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0014512
Unique Nameg.arboreum_cottongen_reftransV1_0014512
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length798
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr10chromosomeg.arboreum_cottongen_reftransV1_0014512:1..798 .
Chr10:19630383..19631180 -
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014512 vs. ExPASy TrEMBL
Match: A0A0D2TS93_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G187300 PE=4 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.816e-38
Identity = 140/151 (92.72%), Postives = 142/151 (94.04%), Query Frame = 1 
Query:   28 MGGDIGGEIAAETRKKRKKKGRPXXXXXXXXXXXXXXXXXXXXXXXXXXNTPNXXXXXXXXXXXXHPNLNGGSPVSGLTFGGXXXXXXXRLQKKHKPLLGFKSSRTDQHYPIPSALNXXXXXXXXXXXXXXXXXXLKRHKHTTVKPGSDQM 480
            MGGDIGGEIAAET KKRKKKGRPSLLELQKRSLKQQRLQEPQQPQLLLQNTPNSSI+S RRSTRRH NLNGGSPVSG T GGDDDDDDDRLQKKHKPLLGF SSRTDQHYPIPSALNSASYGSD +AD DDPDASLKRHK TTVKPGSDQM
Sbjct:    1 MGGDIGGEIAAETMKKRKKKGRPSLLELQKRSLKQQRLQEPQQPQLLLQNTPNSSINSNRRSTRRHANLNGGSPVSGSTSGGDDDDDDDRLQKKHKPLLGFNSSRTDQHYPIPSALNSASYGSDSNADDDDPDASLKRHKFTTVKPGSDQM 151
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014512 vs. ExPASy TrEMBL
Match: A0A0D2UPW0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G187300 PE=4 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 4.316e-38
Identity = 140/151 (92.72%), Postives = 142/151 (94.04%), Query Frame = 1 
Query:   28 MGGDIGGEIAAETRKKRKKKGRPXXXXXXXXXXXXXXXXXXXXXXXXXXNTPNXXXXXXXXXXXXHPNLNGGSPVSGLTFGGXXXXXXXRLQKKHKPLLGFKSSRTDQHYPIPSALNXXXXXXXXXXXXXXXXXXLKRHKHTTVKPGSDQM 480
            MGGDIGGEIAAET KKRKKKGRPSLLELQKRSLKQQRLQEPQQPQLLLQNTPNSSI+S RRSTRRH NLNGGSPVSG T GGDDDDDDDRLQKKHKPLLGF SSRTDQHYPIPSALNSASYGSD +AD DDPDASLKRHK TTVKPGSDQM
Sbjct:    1 MGGDIGGEIAAETMKKRKKKGRPSLLELQKRSLKQQRLQEPQQPQLLLQNTPNSSINSNRRSTRRHANLNGGSPVSGSTSGGDDDDDDDRLQKKHKPLLGFNSSRTDQHYPIPSALNSASYGSDSNADDDDPDASLKRHKFTTVKPGSDQM 151
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014512 vs. ExPASy TrEMBL
Match: A0A0B0NKU6_GOSAR (Bromodomain and PHD finger-containing 3 OS=Gossypium arboreum GN=F383_17198 PE=4 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 7.529e-28
Identity = 130/151 (86.09%), Postives = 134/151 (88.74%), Query Frame = 1 
Query:   28 MGGDIGGEIAAETRKKRKKKGRPXXXXXXXXXXXXXXXXXXXXXXXXXXNTPNXXXXXXXXXXXXHPNLNGGSPVSGLTFGGXXXXXXXRLQKKHKPLLGFKSSRTDQHYPIPSALNXXXXXXXXXXXXXXXXXXLKRHKHTTVKPGSDQM 480
            MGG   GEIAAETRKKRKK GRPSLLELQKRSLKQQ+LQEPQQPQLL Q TPNSSI S RRSTRRHPNLNGGSPVSG   GG+DDDDDDRLQKKHKPLLGF SSRTDQHYPIPSALNSASYGSD +ADGD+PDASLKR K T  KPGSDQM
Sbjct:    1 MGGGGVGEIAAETRKKRKK-GRPSLLELQKRSLKQQQLQEPQQPQLLPQKTPNSSIFSNRRSTRRHPNLNGGSPVSGSISGGEDDDDDDRLQKKHKPLLGFNSSRTDQHYPIPSALNSASYGSDSNADGDNPDASLKRRKFTAAKPGSDQM 150
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014512 vs. ExPASy TrEMBL
Match: A0A0D2S3X5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G187100 PE=4 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.012e-25
Identity = 126/144 (87.50%), Postives = 131/144 (90.97%), Query Frame = 1 
Query:   49 EIAAETRKKRKKKGRPXXXXXXXXXXXXXXXXXXXXXXXXXXNTPNXXXXXXXXXXXXHPNLNGGSPVSGLTFGGXXXXXXXRLQKKHKPLLGFKSSRTDQHYPIPSALNXXXXXXXXXXXXXXXXXXLKRHKHTTVKPGSDQM 480
            EIAAETRKKRKK GRPSLLELQKRSLKQQ+LQEPQQPQLLLQ TPNSSI+S RRSTRRHPNLNGGSPVSG   GG+DDDDDDRLQKKHKPLLGF SSRTDQHYPIPSALNSASYGSD +ADGD+PDASLKR K T  K GSDQM
Sbjct:    8 EIAAETRKKRKK-GRPSLLELQKRSLKQQQLQEPQQPQLLLQKTPNSSINSNRRSTRRHPNLNGGSPVSGSISGGEDDDDDDRLQKKHKPLLGFNSSRTDQHYPIPSALNSASYGSDSNADGDNPDASLKRRKFTAAKAGSDQM 150
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014512 vs. ExPASy TrEMBL
Match: A0A0D2QIN0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G187000 PE=4 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.575e-13
Identity = 72/100 (72.00%), Postives = 80/100 (80.00%), Query Frame = 1 
Query:  181 PNXXXXXXXXXXXXHPNLNGGSPVSGLTFGGXXXXXXXRLQKKHKPLLGFKSSRTDQHYPIPSALNXXXXXXXXXXXXXXXXXXLKRHKHTTVKPGSDQM 480
            PNSSI+S  RS RRHPNL G SPV G   GG++DDD+ RL+KKHKPLLGF SSR  QHYP+PSALNSASYGSD +ADGDDPDASLKR K T   PGS +M
Sbjct:   58 PNSSINSNHRSARRHPNLKGDSPVPGWISGGNNDDDE-RLEKKHKPLLGFNSSRNHQHYPLPSALNSASYGSDSNADGDDPDASLKRRKFTNANPGSYEM 156
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014512 vs. ExPASy TrEMBL
Match: A0A0B0NHV3_GOSAR (Bromodomain and PHD finger-containing 3 OS=Gossypium arboreum GN=F383_17199 PE=4 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.546e-12
Identity = 70/100 (70.00%), Postives = 78/100 (78.00%), Query Frame = 1 
Query:  181 PNXXXXXXXXXXXXHPNLNGGSPVSGLTFGGXXXXXXXRLQKKHKPLLGFKSSRTDQHYPIPSALNXXXXXXXXXXXXXXXXXXLKRHKHTTVKPGSDQM 480
            PNSSI+S  RS RRHPNL G SPV G   GG+DDDD+ RL+KKHKPLLGF SSR  QHYP+PSA NSASYGSD +ADGD PD+SLKR K T   PGS +M
Sbjct:   57 PNSSINSNHRSARRHPNLKGDSPVPGWISGGNDDDDE-RLEKKHKPLLGFNSSRNHQHYPLPSAPNSASYGSDSNADGDGPDSSLKRRKFTNANPGSYEM 155
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014512 vs. ExPASy TrEMBL
Match: A0A0D2PRA5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G114300 PE=4 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 1.109e-8
Identity = 95/153 (62.09%), Postives = 107/153 (69.93%), Query Frame = 1 
Query:   37 DIGGEIAAETRKKRKKKGRPXXXXXXXXXXXXXXXXXXXXXXXXXXNTPNXXXXXXXXXXXXHPNLNGGSPVSGL-----TFGGXXXXXXXRLQKKHKPLLGFKSSRTDQHYPIPSALNXXXXXXXXXXXXXXXXXXLKRHKHTTVKPGSDQM 480
            +IGGEIAAET K+  KKGRPSLLELQKRSLKQ + Q+  Q   L      SS +S RRS RR+PNL+GGSP+            DDDDDD+R QKKHK LLG  SSR   HY IPSA NSAS GSD +ADG DP+ASLKR K TT+ PGSDQM
Sbjct:   60 EIGGEIAAETMKR--KKGRPSLLELQKRSLKQHQQQQALQQNPLNVLNTISSTNSSRRSARRNPNLHGGSPIPDWIAGGGGDDDDDDDDDERQQKKHKLLLGLNSSRNHHHYRIPSAHNSASCGSDSNADGGDPEASLKRRKVTTLSPGSDQM 210
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014512 vs. ExPASy TrEMBL
Match: A0A0B0P7X9_GOSAR (Bromodomain and PHD finger-containing 3 OS=Gossypium arboreum GN=F383_27275 PE=4 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 1.693e-7
Identity = 58/91 (63.74%), Postives = 64/91 (70.33%), Query Frame = 1 
Query:  223 HPNLNGGSPVSGL-----TFGGXXXXXXXRLQKKHKPLLGFKSSRTDQHYPIPSALNXXXXXXXXXXXXXXXXXXLKRHKHTTVKPGSDQM 480
            +PNL+GGSP+            DDDDDD+R QKKHK LLG  SSR   HYPIPSA NSAS GSD +ADG DP ASLKR K TT+ PGSDQM
Sbjct:   51 NPNLHGGSPIPDWIAGGDGDDDDDDDDDERQQKKHKLLLGLNSSRNHHHYPIPSAHNSASCGSDSNADGGDPKASLKRRKVTTLSPGSDQM 141
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014512 vs. ExPASy TrEMBL
Match: A0A061FF09_THECC (DNA-binding bromodomain-containing protein, putative OS=Theobroma cacao GN=TCM_034401 PE=4 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 5.973e-7
Identity = 87/152 (57.24%), Postives = 105/152 (69.08%), Query Frame = 1 
Query:   40 IGGEIAAET-RKKRKKKGRPXXXXXXXXXXXXXXXXXXXXXXXXXXN----TPNXXXXXXXXXXXXHPNLNGGSPVSGLTFGGXXXXXXXRLQKKHKPLLGFKSSRTDQHYPIPSALNXXXXXXXXXXXXXXXXXXLKRHKHTTVKPGSDQM 480
            +GGEIAA T  KK+KK+G PS LELQKRS+KQQ+  E QQ     +N     PN S +S RRSTRR+PNL+GGSP+      G +DDDD+R QKKHK LLG  SSR  QHYP  SA  +ASY SD +AD +DP+  LKR K  + +PGSDQM
Sbjct:    1 MGGEIAAGTMTKKKKKEGLPSHLELQKRSIKQQQQDEEQQQSHQQKNPNLINPNFSTNSSRRSTRRNPNLDGGSPLPEW-IDGGEDDDDERQQKKHKLLLGLNSSRNRQHYPNSSAPKTASYSSDSNADSEDPEVPLKRRKVASFRPGSDQM 151
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0014512 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 9
Match NameE-valueIdentityDescription
A0A0D2TS93_GOSRA2.816e-3892.72Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2UPW0_GOSRA4.316e-3892.72Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B0NKU6_GOSAR7.529e-2886.09Bromodomain and PHD finger-containing 3 OS=Gossypi... [more]
A0A0D2S3X5_GOSRA3.012e-2587.50Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2QIN0_GOSRA8.575e-1372.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B0NHV3_GOSAR9.546e-1270.00Bromodomain and PHD finger-containing 3 OS=Gossypi... [more]
A0A0D2PRA5_GOSRA1.109e-862.09Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B0P7X9_GOSAR1.693e-763.74Bromodomain and PHD finger-containing 3 OS=Gossypi... [more]
A0A061FF09_THECC5.973e-757.24DNA-binding bromodomain-containing protein, putati... [more]
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BLAST of g.arboreum_cottongen_reftransV1_0014512 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR22881BROMODOMAIN CONTAINING PROTEINcoord: 11..109

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0014512 ID=g.arboreum_cottongen_reftransV1_0014512; Name=g.arboreum_cottongen_reftransV1_0014512; organism=Gossypium arboreum; type=contig; length=798bp
AAAAAAAAAGGCGAAAAAGAAAAAGCAATGGGAGGTGATATTGGTGGTGA
GATAGCAGCGGAGACAAGGAAGAAGAGGAAGAAGAAGGGAAGGCCCTCTC
TTTTAGAACTTCAAAAACGCTCTCTCAAACAACAAAGACTTCAGGAGCCG
CAGCAACCGCAATTGCTTCTTCAAAATACCCCTAATTCTTCTATCAGTTC
GAAACGCCGATCCACTCGCCGCCACCCAAATCTCAACGGTGGGTCCCCAG
TTTCCGGATTGACTTTCGGAGGAGACGACGACGACGACGATGACCGCCTG
CAGAAGAAGCACAAACCATTGCTTGGCTTCAAATCTTCTCGTACTGATCA
GCATTATCCGATTCCTTCGGCACTCAATTCGGCCTCCTATGGGTCCGATT
GGGATGCGGATGGTGACGATCCCGACGCGTCACTCAAGCGTCACAAGCAT
ACCACCGTCAAGCCTGGATCTGATCAAATGTTGATTAATCATACATTAAT
ATATAGAATTCGCAAGTTTTTTATAGTCCTGTTTTTGAAACAGAATCATA
AAAGGATTTTCCTACTTTATTTGGATATTTTATCTTAGGGTTTATATTTT
GGAAGTCGAAAATAGCTTCTCGCGTGCCGAAATTTTATGATTGCGACGGA
GATAAACGAATGAGTTTGACCAAGTCATGTACCTTTTTTTATTGGATATT
ATTTGATTTTCAGCAAAACTTCAAGTTATTTTACTGGATATTTTATGTCT
GTAAAGCTTCAGTTTTGTCTTTTCTTTAATAATAATACTAAAATTTTT
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