g.arboreum_cottongen_reftransV1_0016361, g.arboreum_cottongen_reftransV1_0016361 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0016361
Unique Name	g.arboreum_cottongen_reftransV1_0016361
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	624

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr9	chromosome	g.arboreum_cottongen_reftransV1_0016361:1..624 . Chr9:3068294..3068917 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Match: A0A0D2VPN7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G205900 PE=4 SV=1)

HSP 1 Score: 430.254 bits (1105), Expect = 2.020e-144
Identity = 207/208 (99.52%), Postives = 207/208 (99.52%), Query Frame = 1

Query:    1 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 624
            GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGF TIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL
Sbjct:   22 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFGTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 229

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Match: A0A0D2UVW3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G205900 PE=4 SV=1)

HSP 1 Score: 429.869 bits (1104), Expect = 3.434e-144
Identity = 207/208 (99.52%), Postives = 207/208 (99.52%), Query Frame = 1

Query:    1 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 624
            GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGF TIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL
Sbjct:   22 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFGTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 229

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Match: A0A0D2UW96_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G205900 PE=4 SV=1)

HSP 1 Score: 430.639 bits (1106), Expect = 6.829e-144
Identity = 207/208 (99.52%), Postives = 207/208 (99.52%), Query Frame = 1

Query:    1 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 624
            GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGF TIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL
Sbjct:   22 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFGTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 229

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Match: A0A0D2TB59_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G205900 PE=4 SV=1)

HSP 1 Score: 430.639 bits (1106), Expect = 1.517e-143
Identity = 207/208 (99.52%), Postives = 207/208 (99.52%), Query Frame = 1

Query:    1 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 624
            GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGF TIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL
Sbjct:   22 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFGTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 229

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Match: A0A061FTE4_THECC (Sec23/Sec24 protein transport family protein isoform 2 OS=Theobroma cacao GN=TCM_045610 PE=4 SV=1)

HSP 1 Score: 415.616 bits (1067), Expect = 8.680e-138
Identity = 198/208 (95.19%), Postives = 204/208 (98.08%), Query Frame = 1

Query:    1 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 624
            GTKQEASNCVVPVSA+YTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASS+PPVFMFV+DTSIIEEEMAFLKS+LSQAIGLLPDNSLVGLITFGTLVHVHELGF  IPKTYVFKGSKDVSK+QLLEQM+FFL KPKP TGVIAGARDGLSSESIARFL
Sbjct:   22 GTKQEASNCVVPVSAIYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSLPPVFMFVLDTSIIEEEMAFLKSSLSQAIGLLPDNSLVGLITFGTLVHVHELGFGAIPKTYVFKGSKDVSKDQLLEQMSFFLNKPKPTTGVIAGARDGLSSESIARFL 229

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Match: A0A061FTV4_THECC (Sec23/Sec24 protein transport family protein isoform 1 OS=Theobroma cacao GN=TCM_045610 PE=4 SV=1)

HSP 1 Score: 413.305 bits (1061), Expect = 1.961e-134
Identity = 198/208 (95.19%), Postives = 204/208 (98.08%), Query Frame = 1

Query:    1 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 624
            GTKQEASNCVVPVSA+YTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASS+PPVFMFV+DTSIIEEEMAFLKS+LSQAIGLLPDNSLVGLITFGTLVHVHELGF  IPKTYVFKGSKDVSK+QLLEQM+FFL KPKP TGVIAGARDGLSSESIARFL
Sbjct:   22 GTKQEASNCVVPVSAIYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSLPPVFMFVLDTSIIEEEMAFLKSSLSQAIGLLPDNSLVGLITFGTLVHVHELGFGAIPKTYVFKGSKDVSKDQLLEQMSFFLNKPKPTTGVIAGARDGLSSESIARFL 229

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Match: B9SKJ9_RICCO (Protein transport protein sec23, putative OS=Ricinus communis GN=RCOM_0659690 PE=4 SV=1)

HSP 1 Score: 392.119 bits (1006), Expect = 1.088e-128
Identity = 186/208 (89.42%), Postives = 195/208 (93.75%), Query Frame = 1

Query:    1 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 624
            G+KQEASNCVVPVSA+YTPIKPFPNMPVLPYAPLRCR CRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHY SISD+NLPAELFPQYTTIEY++PGE  S   VFMFVVDT IIEEEMAFLKSALSQAI LLPDNSLVGLITFGTLVHVHELGF  IPKTYVF+GSKDVSK+QLL+QM FFL KPKPPTGVIAGARDGLSSESI+RFL
Sbjct:   22 GSKQEASNCVVPVSAIYTPIKPFPNMPVLPYAPLRCRTCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYGSISDDNLPAELFPQYTTIEYETPGEKFSYSSVFMFVVDTCIIEEEMAFLKSALSQAIDLLPDNSLVGLITFGTLVHVHELGFGQIPKTYVFRGSKDVSKDQLLDQMGFFLKKPKPPTGVIAGARDGLSSESISRFL 229

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Match: A0A0A0KD02_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G078680 PE=4 SV=1)

HSP 1 Score: 385.956 bits (990), Expect = 3.424e-126
Identity = 181/209 (86.60%), Postives = 197/209 (94.26%), Query Frame = 1

Query:    1 GTKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEA-SSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 624
            GTKQEASNC+VPVSA+YTPIK FPNMPVLPY+PLRCR CRS+LNPFSIVDFAAKIWICPFCFQRNHFPPHYASISD+NLPAELFPQYTTIEY+S GE  S +PPVFMFV+DT IIEEE+AFLKSALSQA+ LLPDNSLVGL+T+GT VHVHELGF  IPKT+VFKG+KDVSK+QLLEQMNFFL KPKPPTGVIAGARDGLS+ESIARFL
Sbjct:   22 GTKQEASNCIVPVSALYTPIKAFPNMPVLPYSPLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDDNLPAELFPQYTTIEYESTGETPSPVPPVFMFVLDTCIIEEEIAFLKSALSQAVDLLPDNSLVGLVTYGTFVHVHELGFGQIPKTFVFKGTKDVSKDQLLEQMNFFLKKPKPPTGVIAGARDGLSTESIARFL 230

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Match: A0A067HBX3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004199mg PE=4 SV=1)

HSP 1 Score: 368.237 bits (944), Expect = 6.014e-123
Identity = 181/216 (83.80%), Postives = 195/216 (90.28%), Query Frame = 1

Query:    1 GTKQEASNCVVPVSAVYTPIKPFP----NMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQ--SPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELG--FNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 624
            GTKQEASNCVVPVSA+YTPIK FP    +MP+LPYAPLRCR CRS+LNPFSIVDFAAKIWICPFCFQRNHFPPHYASI+D+NLPAELFPQYTTIEY+   PGE SS+PPVFMFVVDT IIEEEM+FLKSALSQAI LLPDNSLVGLITFGTLV VHELG     IPKTYVFKGSKDVSK+QLLEQ+NFF+ KPKP TGVIAG RDGLSS++IARFL
Sbjct:   22 GTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPPGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFL 237

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Match: A0A067HC62_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004199mg PE=4 SV=1)

HSP 1 Score: 370.163 bits (949), Expect = 1.690e-122
Identity = 181/216 (83.80%), Postives = 195/216 (90.28%), Query Frame = 1

Query:    1 GTKQEASNCVVPVSAVYTPIKPFP----NMPVLPYAPLRCRNCRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQ--SPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELG--FNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 624
            GTKQEASNCVVPVSA+YTPIK FP    +MP+LPYAPLRCR CRS+LNPFSIVDFAAKIWICPFCFQRNHFPPHYASI+D+NLPAELFPQYTTIEY+   PGE SS+PPVFMFVVDT IIEEEM+FLKSALSQAI LLPDNSLVGLITFGTLV VHELG     IPKTYVFKGSKDVSK+QLLEQ+NFF+ KPKP TGVIAG RDGLSS++IARFL
Sbjct:   22 GTKQEASNCVVPVSAIYTPIKAFPVNNNSMPILPYAPLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASITDDNLPAELFPQYTTIEYEPPGPGEKSSVPPVFMFVVDTCIIEEEMSFLKSALSQAIDLLPDNSLVGLITFGTLVQVHELGGFGQIIPKTYVFKGSKDVSKDQLLEQLNFFIKKPKPSTGVIAGVRDGLSSDTIARFL 237

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Match: SEC23_COCIM (Protein transport protein SEC23 OS=Coccidioides immitis (strain RS) GN=SEC23 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.143e-57
Identity = 100/208 (48.08%), Postives = 134/208 (64.42%), Query Frame = 1

Query:    4 TKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRN-CRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKPPTGVIAGARDGLSSESIARFL 624
            T+ EAS  VVP+ A+YTP+K  P+ P+L Y P+ C+  CR+VLNP++ VD  A+IWICPFC QRN  PPHY  I++  +P EL PQ TTIEYQ    A + PP+F+FVVDT   E+ +  +K +L  ++ LLP N+LVGLITFGT+  VHELG+    K+YVFKGSKD + +Q+ E +       + P       R   +    ARFL
Sbjct:   29 TRMEASRLVVPIGAIYTPLKERPDAPLLQYEPVTCKQPCRAVLNPYANVDIRARIWICPFCLQRNPLPPHYKDITENTIPPELHPQSTTIEYQLARPAPA-PPIFLFVVDTCQEEDGLKAVKDSLVMSLSLLPPNALVGLITFGTMAQVHELGYTECAKSYVFKGSKDYTPKQIQEMLGLLAPGLRAPAPQQQPGRPAPAVAPAARFL 235

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Match: SEC23_USTMA (Protein transport protein SEC23 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SEC23 PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.378e-55
Identity = 87/180 (48.33%), Postives = 129/180 (71.67%), Query Frame = 1

Query:    4 TKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRN-CRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNF 540
            +K EA+  VVP+SA+YTP+K   ++P + Y P+ C+  CR+VLNP+  +D   K+WICPFC  RN FPPHY  IS  NLPAEL P+YTTIEY +    + IPP+F++VVDT + ++++  L+ AL  ++ LLP N+LVGLIT+GT+  VHELG++  PK+YVF+G+K+ + + + + +  
Sbjct:   22 SKIEATRTVVPISALYTPLKEREDLPPVLYEPVTCKPPCRAVLNPYCQIDVRGKLWICPFCLSRNAFPPHYKDISSTNLPAELLPKYTTIEY-TLSRPAQIPPIFLYVVDTCMDDDDLKALREALVVSLSLLPPNALVGLITYGTMAQVHELGYDACPKSYVFRGTKEYAPKAIQDMLGL 200

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Match: SEC23_CHAGB (Protein transport protein SEC23 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=SEC23 PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.364e-54
Identity = 92/185 (49.73%), Postives = 129/185 (69.73%), Query Frame = 1

Query:    4 TKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRN-CRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKP 555
            T+ EAS  VVP+ A+YTP+K  P+ P+L + P+ C+  CRSVLNPF  VD  A++WICPFC  RN  PPHY  I+ + +P EL P  TTIEY+    A S PP+F++VVDT   E+ +A LK +L  ++ LLP+N+LVGLIT+GT+  VHE+G+    K+YVF+GSK+ + +Q+ E +   LI+P
Sbjct:   29 TRMEASRLVVPIGALYTPLKEKPDTPLLQFEPVTCKQPCRSVLNPFCQVDVRARLWICPFCLSRNPLPPHYKDITAQAIPPELHPSNTTIEYRLSRPAPS-PPIFLYVVDTCQEEDSLAALKESLIMSLSLLPENALVGLITYGTMAQVHEIGYTECAKSYVFRGSKEYAAKQVQEMLG--LIQP 210

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Match: SEC23_ASPOR (Protein transport protein sec23 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=sec23 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 6.772e-54
Identity = 90/187 (48.13%), Postives = 125/187 (66.84%), Query Frame = 1

Query:    4 TKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRN-CRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKP 561
            ++ EAS  VVP+ AVYTP+K  P+ P+L Y P+ C+  CR+VLNP++ VD  A+IWICPFC  RN  PPHY  I++  +P EL P  TTIEYQ    A + PP+F++VVDT   E+ +  LK  L  ++ LLP N+LVGLIT+GT+  VHELG+    K+YVF+GSK+ + +Q+ E +       +P
Sbjct:   29 SRMEASRLVVPIGAVYTPLKDKPDSPLLQYEPVTCKAPCRAVLNPYANVDVRARIWICPFCLMRNPLPPHYKDITESTIPPELHPLSTTIEYQLARPAPT-PPIFVYVVDTCQEEDSLKALKDTLVMSLSLLPANALVGLITYGTMAQVHELGYTECAKSYVFRGSKEYAAKQVQEMLGLLSAGVRP 214

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Match: SEC23_MAGO7 (Protein transport protein SEC23 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=SEC23 PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 2.036e-53
Identity = 89/187 (47.59%), Postives = 126/187 (67.38%), Query Frame = 1

Query:    4 TKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRN-CRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKP 561
            T+ EAS  VVP+ A+YTP+K  P+ P+L + P+ C+  CRSVLNPF  VD  A++WICPFC  RN  PPHY  I+   +P EL P  TTIEY+    A S PP+F++VVDT   ++ +  LK +L  ++ LLP+N+LVGLIT+GT+  VHE+G+    K+YVF+GSKD + +Q+ E +    +  +P
Sbjct:   29 TRMEASRLVVPIGALYTPLKEKPDTPLLQFEPVTCKQPCRSVLNPFCQVDVRARLWICPFCLSRNPLPPHYKDITANAIPPELHPSNTTIEYRLSRPAPS-PPIFLYVVDTCQEDDSLNALKESLVMSLSLLPENALVGLITYGTMTQVHEIGYTECAKSYVFRGSKDYAPKQVQEMLGLGQMPVRP 214

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Match: SEC23_ASPCL (Protein transport protein sec23 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=sec23 PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 2.080e-53
Identity = 95/187 (50.80%), Postives = 127/187 (67.91%), Query Frame = 1

Query:    4 TKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRN-CRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKPKP 561
            T+ EAS  VVP++AVYTP+K  P  P+L Y P+ C+  CR+VLNP++ VD  A+IWICPFC  RN  PPHY  I++  +P EL PQ TTIEYQ    A + PP+F++VVDT   E+ +  LK  L  ++ LLP N+LVGLITFGT+  VHELG+    K+YVF+GSKD + +Q+ E +      P+P
Sbjct:   29 TRMEASRLVVPIAAVYTPLKEKPESPLLQYEPVTCKAPCRAVLNPYANVDVRARIWICPFCLMRNPLPPHYKDITENAIPPELHPQSTTIEYQLARPAPA-PPIFVYVVDTCQEEDSLKALKDTLILSLSLLPPNALVGLITFGTMAQVHELGYTECAKSYVFRGSKDYAAKQVQEMLGLLAPGPRP 214

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Match: SEC23_ASPNC (Protein transport protein sec23 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sec23 PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 2.877e-53
Identity = 88/180 (48.89%), Postives = 124/180 (68.89%), Query Frame = 1

Query:    4 TKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRN-CRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNF 540
            ++ EAS  VVP+ AVYTP+K  P+ P+L Y P+ C+  CR+VLNP++ VD  A+IWICPFC  RN  PPHY  I++  +P EL P  TTIEYQ    A + PP+F++VVDT   ++ +  LK +L  ++ LLP N+LVGLIT+GT+  VHELG+    K+YVF+GSK+ + +Q+ E +  
Sbjct:   29 SRMEASRLVVPIGAVYTPLKEKPDSPLLQYEPVTCKAPCRAVLNPYANVDVRARIWICPFCLMRNPLPPHYKDITESTIPPELHPMSTTIEYQLARPAPA-PPIFVYVVDTCQDDDSLKALKDSLIMSLSLLPVNALVGLITYGTMAQVHELGYTECAKSYVFRGSKEYAAKQVQEMLGL 207

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Match: SEC23_NEUCR (Protein transport protein sec23 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=sec23-1 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 4.119e-53
Identity = 88/185 (47.57%), Postives = 129/185 (69.73%), Query Frame = 1

Query:    4 TKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRN-CRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNFFLIKP 555
            T+ EAS  VVP+ A+YTP+K  P+ P+L + P+ C+  CRSVLNP+  VD  A++WICPFC  RN  PPHY  I+   +P EL P  TTIEY+    A + PP+F++VVDT   E+ +A LK +L  ++ LLP+++LVGLIT+GT+  VHE+G+   PK+YVF+G+K+ + +Q+ E +   L++P
Sbjct:   29 TRMEASRLVVPIGALYTPLKEKPDTPLLQFDPVSCKQPCRSVLNPYCQVDVRARLWICPFCLSRNPLPPHYKDITANAIPPELHPSNTTIEYRLSRPAPA-PPIFLYVVDTCQEEDSLAALKESLIMSLSLLPEHALVGLITYGTMAQVHEIGYTECPKSYVFRGNKEYAAKQVQEMLG--LVQP 210

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Match: SC23A_MOUSE (Protein transport protein Sec23A OS=Mus musculus GN=Sec23a PE=1 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 4.468e-53
Identity = 88/181 (48.62%), Postives = 126/181 (69.61%), Query Frame = 1

Query:    4 TKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRN--CRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNF 540
            ++ EA+  VVPV+A++TP+K  P++P + Y P+ C    CR+VLNP   VD+ AK+W C FC+QRN FPP YA IS+ N PAEL PQ+++IEY        +P +F++VVDT I +E++  LK ++  ++ LLP  +LVGLITFG +V VHELG   I K+YVF+G+KD+S +QL E +  
Sbjct:   27 SRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPTYAGISELNQPAELLPQFSSIEYVVL-RGPQMPLIFLYVVDTCIEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGL 206

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Match: SEC23_YARLI (Protein transport protein SEC23 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SEC23 PE=3 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 5.201e-53
Identity = 88/180 (48.89%), Postives = 121/180 (67.22%), Query Frame = 1

Query:    4 TKQEASNCVVPVSAVYTPIKPFPNMPVLPYAPLRCRN-CRSVLNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDENLPAELFPQYTTIEYQSPGEASSIPPVFMFVVDTSIIEEEMAFLKSALSQAIGLLPDNSLVGLITFGTLVHVHELGFNTIPKTYVFKGSKDVSKEQLLEQMNF 540
            T+ EAS  VVP+SA+YTP+K  PN+PVL Y P+ CR  CR+VLN F  VD  A+ W+CPFC  RN  PP Y  I+ ENLP EL P+ TT+EY     A +  P+F+FVVDT +  E +  LK  L   + L+P+N+LVGLITFG +  VHE+G+    K++VF+G++D + +Q+ EQ+  
Sbjct:   22 TRIEASRTVVPISALYTPLKEKPNLPVLQYEPIACRPPCRAVLNSFCQVDLRARAWVCPFCLSRNQLPPQYRDITPENLPHELRPECTTVEYVLSRPAPN--PIFLFVVDTCLDAENLTALKDHLVATLSLIPENALVGLITFGAMAQVHEIGYRECGKSFVFRGNRDYTAKQVQEQLGL 199

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2VPN7_GOSRA	2.020e-144	99.52	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2UVW3_GOSRA	3.434e-144	99.52	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2UW96_GOSRA	6.829e-144	99.52	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2TB59_GOSRA	1.517e-143	99.52	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061FTE4_THECC	8.680e-138	95.19	Sec23/Sec24 protein transport family protein isofo...	[more]
A0A061FTV4_THECC	1.961e-134	95.19	Sec23/Sec24 protein transport family protein isofo...	[more]
B9SKJ9_RICCO	1.088e-128	89.42	Protein transport protein sec23, putative OS=Ricin...	[more]
A0A0A0KD02_CUCSA	3.424e-126	86.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_...	[more]
A0A067HBX3_CITSI	6.014e-123	83.80	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
A0A067HC62_CITSI	1.690e-122	83.80	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0016361 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
SEC23_COCIM	1.143e-57	48.08	Protein transport protein SEC23 OS=Coccidioides im...	[more]
SEC23_USTMA	1.378e-55	48.33	Protein transport protein SEC23 OS=Ustilago maydis...	[more]
SEC23_CHAGB	1.364e-54	49.73	Protein transport protein SEC23 OS=Chaetomium glob...	[more]
SEC23_ASPOR	6.772e-54	48.13	Protein transport protein sec23 OS=Aspergillus ory...	[more]
SEC23_MAGO7	2.036e-53	47.59	Protein transport protein SEC23 OS=Magnaporthe ory...	[more]
SEC23_ASPCL	2.080e-53	50.80	Protein transport protein sec23 OS=Aspergillus cla...	[more]
SEC23_ASPNC	2.877e-53	48.89	Protein transport protein sec23 OS=Aspergillus nig...	[more]
SEC23_NEUCR	4.119e-53	47.57	Protein transport protein sec23 OS=Neurospora cras...	[more]
SC23A_MOUSE	4.468e-53	48.62	Protein transport protein Sec23A OS=Mus musculus G...	[more]
SEC23_YARLI	5.201e-53	48.89	Protein transport protein SEC23 OS=Yarrowia lipoly...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002035	von Willebrand factor, type A	GENE3D	3.40.50.410		coord: 77..161 e-value: 1.9E-28 score: 99.0
IPR002035	von Willebrand factor, type A	SUPERFAMILY	53300	vWA-like	coord: 76..159
IPR006895	Zinc finger, Sec23/Sec24-type	PFAM	PF04810	zf-Sec23_Sec24	coord: 8..46 e-value: 2.1E-18 score: 65.9
IPR006895	Zinc finger, Sec23/Sec24-type	SUPERFAMILY	82919	Zn-finger domain of Sec23/24	coord: 2..71
IPR006896	Sec23/Sec24, trunk domain	PFAM	PF04811	Sec23_trunk	coord: 77..153 e-value: 1.8E-17 score: 63.6
None	No IPR available	PANTHER	PTHR11141	PROTEIN TRANSPORT PROTEIN SEC23	coord: 1..183
None	No IPR available	PANTHER	PTHR11141:SF2	SUBFAMILY NOT NAMED	coord: 1..183

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0016361 ID=g.arboreum_cottongen_reftransV1_0016361; Name=g.arboreum_cottongen_reftransV1_0016361; organism=Gossypium arboreum; type=contig; length=624bp
GGGACAAAGCAAGAGGCAAGTAACTGTGTGGTGCCAGTGTCAGCCGTCTA
CACTCCGATCAAACCATTCCCCAACATGCCGGTCCTACCCTATGCTCCTC
TCCGTTGCCGCAATTGCCGCTCTGTCCTCAACCCCTTCTCCATCGTGGAT
TTTGCTGCCAAGATTTGGATCTGCCCCTTCTGCTTCCAGCGCAATCACTT
CCCTCCCCACTATGCCTCCATCTCAGACGAAAATCTCCCTGCTGAGCTCT
TCCCTCAGTACACCACCATTGAGTACCAATCCCCAGGGGAGGCCTCCTCC
ATTCCTCCTGTCTTCATGTTCGTTGTTGACACCTCCATTATTGAAGAGGA
AATGGCATTCCTGAAGTCTGCATTGTCCCAGGCCATAGGCCTTTTGCCCG
ACAACTCTCTTGTTGGTTTGATCACATTTGGCACCCTCGTTCATGTGCAT
GAGCTTGGCTTCAATACCATTCCTAAGACCTATGTCTTCAAGGGCTCCAA
GGATGTCTCTAAAGAACAGCTTCTTGAGCAGATGAACTTCTTCCTTATCA
AGCCCAAGCCCCCCACTGGTGTCATTGCTGGTGCCAGAGATGGCCTGTCT
TCTGAGAGCATTGCCCGATTCCTG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR002035	VWF_A
IPR006895	Znf_Sec23_Sec24
IPR006896	Sec23/24_trunk_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0006886	intracellular protein transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0030127	COPII vesicle coat

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

Search form

g.arboreum_cottongen_reftransV1_0016361, g.arboreum_cottongen_reftransV1_0016361 (contig) Gossypium arboreum

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