g.arboreum_cottongen_reftransV1_0006910, g.arboreum_cottongen_reftransV1_0006910 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0006910
Unique Nameg.arboreum_cottongen_reftransV1_0006910
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length380
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr12chromosomeg.arboreum_cottongen_reftransV1_0006910:1..380 .
Chr12:130011593..130011972 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: A0A0D2TPG3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G140200 PE=4 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 1.390e-65
Identity = 104/106 (98.11%), Postives = 105/106 (99.06%), Query Frame = 1
Query:    1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRALALV 318
            KALASVSLIGLYENTADDDLRAEVIKELSGWF ASKVESWRHLRTYRIGFAQPNQSPPTDLMKNP+IGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRALALV
Sbjct:  375 KALASVSLIGLYENTADDDLRAEVIKELSGWFGASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPNIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRALALV 480          
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: A0A061E2J9_THECC (FAD/NAD(P)-binding oxidoreductase family protein OS=Theobroma cacao GN=TCM_007540 PE=4 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 8.099e-54
Identity = 90/106 (84.91%), Postives = 93/106 (87.74%), Query Frame = 1
Query:    1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRALALV 318
            KAL SVSLIGL+E+  DDDL AEV  ELSGWF AS V SWRHLRTYRIGFAQPNQSPPTDLMK P I PGLYLCGDY+TSATFDGALVSGRRAVEALLKDRALA V
Sbjct:  369 KALVSVSLIGLFEDVCDDDLTAEVTGELSGWFGASMVGSWRHLRTYRIGFAQPNQSPPTDLMKGPSIAPGLYLCGDYITSATFDGALVSGRRAVEALLKDRALARV 474          
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: B9RNM3_RICCO (Amine oxidase, putative OS=Ricinus communis GN=RCOM_0918760 PE=4 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.606e-47
Identity = 78/102 (76.47%), Postives = 89/102 (87.25%), Query Frame = 1
Query:    1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRA 306
            KAL SVSLIGL+E+ +DDDL  E++ ELSGWF +S V+SW++LRTYRIGFAQPNQ PPTDLMK   +G GLYLCGDYMTSATFDGALVSGR+AVEALL DRA
Sbjct:  376 KALVSVSLIGLFEDVSDDDLTVEIVGELSGWFGSSIVKSWKYLRTYRIGFAQPNQCPPTDLMKTSRVGSGLYLCGDYMTSATFDGALVSGRKAVEALLGDRA 477          
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: M4ELV6_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra029776 PE=4 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.844e-47
Identity = 79/104 (75.96%), Postives = 91/104 (87.50%), Query Frame = 1
Query:    1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRALA 312
            KAL SVSLIG +E+ +D+DL AEVI+ELSGWF  S V+SWRHLRTYRI FAQPNQ PPTDL+K+P +G GLYLCGDYMTSATFDGALVSGRRAVEALL+++ L 
Sbjct:  370 KALVSVSLIGSFEDRSDEDLAAEVIRELSGWFGESLVKSWRHLRTYRIEFAQPNQCPPTDLVKDPRVGSGLYLCGDYMTSATFDGALVSGRRAVEALLREKGLV 473          
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: A0A087H899_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G102800 PE=4 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.670e-46
Identity = 78/104 (75.00%), Postives = 89/104 (85.58%), Query Frame = 1
Query:    1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRALA 312
            KAL SVSLIGL+E+ +DDDL +EVI+ELSGWF  S V SW+HL+TYRI FAQPNQ PPTDL+K+P IG GLYLCGDYMTSATFDGALVSGRRAVE LL+ + L 
Sbjct:  373 KALVSVSLIGLFEDRSDDDLASEVIRELSGWFGESSVTSWKHLKTYRIPFAQPNQCPPTDLVKSPRIGSGLYLCGDYMTSATFDGALVSGRRAVEVLLRVKGLV 476          
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: V4LBV6_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10003042mg PE=4 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.745e-46
Identity = 78/103 (75.73%), Postives = 88/103 (85.44%), Query Frame = 1
Query:    1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRAL 309
            KAL SVSLIGL+E+ +DDDL AEVI+ELS WF  S V SWRHL+TYRI FAQPNQ PPTDLMK+P +G GLYLCGDYMTSATFDGALVSG RAVE LL+++ L
Sbjct:  368 KALVSVSLIGLFEDRSDDDLAAEVIRELSCWFGESLVMSWRHLKTYRIQFAQPNQCPPTDLMKSPRVGSGLYLCGDYMTSATFDGALVSGNRAVEVLLREKGL 470          
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: A0A059AT55_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I02693 PE=4 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 3.903e-46
Identity = 77/102 (75.49%), Postives = 88/102 (86.27%), Query Frame = 1
Query:    1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRA 306
            KAL SVSLIGL+E  +DD+L AEV++EL+ WF  S V SWRHLRTYRIGFAQPNQ PPTDL K+P +GPG+Y+CGDY+TSATFDGALVSGR A EALLKDRA
Sbjct:  367 KALVSVSLIGLFEGVSDDNLTAEVVQELAEWFGESVVGSWRHLRTYRIGFAQPNQCPPTDLTKDPRVGPGVYVCGDYVTSATFDGALVSGRVAAEALLKDRA 468          
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: A0A078I4A4_BRANA (BnaA05g28900D protein OS=Brassica napus GN=BnaA05g28900D PE=4 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 4.871e-46
Identity = 79/104 (75.96%), Postives = 89/104 (85.58%), Query Frame = 1
Query:    1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRALA 312
            KAL SVSLIG +E+ +D+DL AEVI+ELSGWF  S V SWRHLRTYRI FAQPNQ PPTDL+KNP +G GLYL GDYMTSATFDGALVSGRRAVEALL+++ L 
Sbjct:  370 KALVSVSLIGSFEDRSDEDLAAEVIRELSGWFGESLVMSWRHLRTYRIHFAQPNQCPPTDLVKNPRVGSGLYLSGDYMTSATFDGALVSGRRAVEALLREKGLV 473          
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: A0A0D3CLN5_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.546e-45
Identity = 77/104 (74.04%), Postives = 87/104 (83.65%), Query Frame = 1
Query:    1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRALA 312
            KAL SVSLIG +E+ +DDDL AEV++ELSGWF  S V SWRHLRTYRI FAQPNQ PPT+L+KNP +G GLYLCGDYMTSATFDGAL SGRRA EALL ++ L 
Sbjct:  367 KALVSVSLIGSFEDRSDDDLAAEVLRELSGWFGESLVTSWRHLRTYRIQFAQPNQCPPTELVKNPRVGSGLYLCGDYMTSATFDGALFSGRRAAEALLLEKGLV 470          
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: A0A078HSS6_BRANA (BnaC05g43370D protein OS=Brassica napus GN=BnaC05g43370D PE=4 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.599e-45
Identity = 77/104 (74.04%), Postives = 87/104 (83.65%), Query Frame = 1
Query:    1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRALA 312
            KAL SVSLIG +E+ +DDDL AEV++ELSGWF  S V SWRHLRTYRI FAQPNQ PPT+L+KNP +G GLYLCGDYMTSATFDGAL SGRRA EALL ++ L 
Sbjct:  367 KALVSVSLIGSFEDRSDDDLAAEVLRELSGWFGESLVTSWRHLRTYRIQFAQPNQCPPTELVKNPRVGSGLYLCGDYMTSATFDGALFSGRRAAEALLLEKGLV 470          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2TPG3_GOSRA1.390e-6598.11Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061E2J9_THECC8.099e-5484.91FAD/NAD(P)-binding oxidoreductase family protein O... [more]
B9RNM3_RICCO2.606e-4776.47Amine oxidase, putative OS=Ricinus communis GN=RCO... [more]
M4ELV6_BRARP3.844e-4775.96Uncharacterized protein OS=Brassica rapa subsp. pe... [more]
A0A087H899_ARAAL1.670e-4675.00Uncharacterized protein OS=Arabis alpina GN=AALP_A... [more]
V4LBV6_EUTSA2.745e-4675.73Uncharacterized protein OS=Eutrema salsugineum GN=... [more]
A0A059AT55_EUCGR3.903e-4675.49Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
A0A078I4A4_BRANA4.871e-4675.96BnaA05g28900D protein OS=Brassica napus GN=BnaA05g... [more]
A0A0D3CLN5_BRAOL2.546e-4574.04Uncharacterized protein OS=Brassica oleracea var. ... [more]
A0A078HSS6_BRANA2.599e-4574.04BnaC05g43370D protein OS=Brassica napus GN=BnaC05g... [more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002937Amine oxidasePFAMPF01593Amino_oxidasecoord: 9..96
e-value: 4.2E-8
score: 32.8
IPR023753FAD/NAD(P)-binding domainGENE3D3.50.50.60coord: 63..99
e-value: 2.5E-7
score: 29.9
NoneNo IPR availablePANTHERPTHR10742AMINE OXIDASEcoord: 1..101
NoneNo IPR availablePANTHERPTHR10742:SF287PROTEIN GLF-1coord: 1..101

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0006910 ID=g.arboreum_cottongen_reftransV1_0006910; Name=g.arboreum_cottongen_reftransV1_0006910; organism=Gossypium arboreum; type=contig; length=380bp
AAAGCATTGGCGTCGGTATCGTTGATTGGGTTGTACGAGAACACCGCCGA
TGATGATCTAAGAGCTGAGGTTATTAAGGAGCTTTCGGGTTGGTTCGAAG
CTTCAAAAGTCGAGTCATGGCGGCACTTAAGAACATATCGAATCGGTTTT
GCACAGCCGAACCAATCACCACCTACGGATTTGATGAAGAATCCCGACAT
CGGACCGGGTTTGTATTTGTGTGGTGATTATATGACTTCGGCTACCTTTG
ATGGAGCTCTGGTTTCAGGTAGAAGAGCGGTGGAAGCTTTGTTAAAAGAC
CGGGCATTGGCTCTGGTTTAAGAAAACCATTGTAGATATCGAATTCTTTT
TTCATGAACATTAGCAAGAACTACTTCATT
back to top
Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR002937Amino_oxidase
IPR023753FAD/NAD-binding_dom
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114obsolete oxidation-reduction process