g.arboreum_cottongen_reftransV1_0006910, g.arboreum_cottongen_reftransV1_0006910 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: A0A0D2TPG3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G140200 PE=4 SV=1) HSP 1 Score: 217.624 bits (553), Expect = 1.390e-65 Identity = 104/106 (98.11%), Postives = 105/106 (99.06%), Query Frame = 1 Query: 1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRALALV 318 KALASVSLIGLYENTADDDLRAEVIKELSGWF ASKVESWRHLRTYRIGFAQPNQSPPTDLMKNP+IGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRALALV Sbjct: 375 KALASVSLIGLYENTADDDLRAEVIKELSGWFGASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPNIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRALALV 480
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: A0A061E2J9_THECC (FAD/NAD(P)-binding oxidoreductase family protein OS=Theobroma cacao GN=TCM_007540 PE=4 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 8.099e-54 Identity = 90/106 (84.91%), Postives = 93/106 (87.74%), Query Frame = 1 Query: 1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRALALV 318 KAL SVSLIGL+E+ DDDL AEV ELSGWF AS V SWRHLRTYRIGFAQPNQSPPTDLMK P I PGLYLCGDY+TSATFDGALVSGRRAVEALLKDRALA V Sbjct: 369 KALVSVSLIGLFEDVCDDDLTAEVTGELSGWFGASMVGSWRHLRTYRIGFAQPNQSPPTDLMKGPSIAPGLYLCGDYITSATFDGALVSGRRAVEALLKDRALARV 474
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: B9RNM3_RICCO (Amine oxidase, putative OS=Ricinus communis GN=RCOM_0918760 PE=4 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 2.606e-47 Identity = 78/102 (76.47%), Postives = 89/102 (87.25%), Query Frame = 1 Query: 1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRA 306 KAL SVSLIGL+E+ +DDDL E++ ELSGWF +S V+SW++LRTYRIGFAQPNQ PPTDLMK +G GLYLCGDYMTSATFDGALVSGR+AVEALL DRA Sbjct: 376 KALVSVSLIGLFEDVSDDDLTVEIVGELSGWFGSSIVKSWKYLRTYRIGFAQPNQCPPTDLMKTSRVGSGLYLCGDYMTSATFDGALVSGRKAVEALLGDRA 477
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: M4ELV6_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra029776 PE=4 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 3.844e-47 Identity = 79/104 (75.96%), Postives = 91/104 (87.50%), Query Frame = 1 Query: 1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRALA 312 KAL SVSLIG +E+ +D+DL AEVI+ELSGWF S V+SWRHLRTYRI FAQPNQ PPTDL+K+P +G GLYLCGDYMTSATFDGALVSGRRAVEALL+++ L Sbjct: 370 KALVSVSLIGSFEDRSDEDLAAEVIRELSGWFGESLVKSWRHLRTYRIEFAQPNQCPPTDLVKDPRVGSGLYLCGDYMTSATFDGALVSGRRAVEALLREKGLV 473
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: A0A087H899_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G102800 PE=4 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 1.670e-46 Identity = 78/104 (75.00%), Postives = 89/104 (85.58%), Query Frame = 1 Query: 1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRALA 312 KAL SVSLIGL+E+ +DDDL +EVI+ELSGWF S V SW+HL+TYRI FAQPNQ PPTDL+K+P IG GLYLCGDYMTSATFDGALVSGRRAVE LL+ + L Sbjct: 373 KALVSVSLIGLFEDRSDDDLASEVIRELSGWFGESSVTSWKHLKTYRIPFAQPNQCPPTDLVKSPRIGSGLYLCGDYMTSATFDGALVSGRRAVEVLLRVKGLV 476
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: V4LBV6_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10003042mg PE=4 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 2.745e-46 Identity = 78/103 (75.73%), Postives = 88/103 (85.44%), Query Frame = 1 Query: 1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRAL 309 KAL SVSLIGL+E+ +DDDL AEVI+ELS WF S V SWRHL+TYRI FAQPNQ PPTDLMK+P +G GLYLCGDYMTSATFDGALVSG RAVE LL+++ L Sbjct: 368 KALVSVSLIGLFEDRSDDDLAAEVIRELSCWFGESLVMSWRHLKTYRIQFAQPNQCPPTDLMKSPRVGSGLYLCGDYMTSATFDGALVSGNRAVEVLLREKGL 470
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: A0A059AT55_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I02693 PE=4 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 3.903e-46 Identity = 77/102 (75.49%), Postives = 88/102 (86.27%), Query Frame = 1 Query: 1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRA 306 KAL SVSLIGL+E +DD+L AEV++EL+ WF S V SWRHLRTYRIGFAQPNQ PPTDL K+P +GPG+Y+CGDY+TSATFDGALVSGR A EALLKDRA Sbjct: 367 KALVSVSLIGLFEGVSDDNLTAEVVQELAEWFGESVVGSWRHLRTYRIGFAQPNQCPPTDLTKDPRVGPGVYVCGDYVTSATFDGALVSGRVAAEALLKDRA 468
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: A0A078I4A4_BRANA (BnaA05g28900D protein OS=Brassica napus GN=BnaA05g28900D PE=4 SV=1) HSP 1 Score: 165.622 bits (418), Expect = 4.871e-46 Identity = 79/104 (75.96%), Postives = 89/104 (85.58%), Query Frame = 1 Query: 1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRALA 312 KAL SVSLIG +E+ +D+DL AEVI+ELSGWF S V SWRHLRTYRI FAQPNQ PPTDL+KNP +G GLYL GDYMTSATFDGALVSGRRAVEALL+++ L Sbjct: 370 KALVSVSLIGSFEDRSDEDLAAEVIRELSGWFGESLVMSWRHLRTYRIHFAQPNQCPPTDLVKNPRVGSGLYLSGDYMTSATFDGALVSGRRAVEALLREKGLV 473
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: A0A0D3CLN5_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 2.546e-45 Identity = 77/104 (74.04%), Postives = 87/104 (83.65%), Query Frame = 1 Query: 1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRALA 312 KAL SVSLIG +E+ +DDDL AEV++ELSGWF S V SWRHLRTYRI FAQPNQ PPT+L+KNP +G GLYLCGDYMTSATFDGAL SGRRA EALL ++ L Sbjct: 367 KALVSVSLIGSFEDRSDDDLAAEVLRELSGWFGESLVTSWRHLRTYRIQFAQPNQCPPTELVKNPRVGSGLYLCGDYMTSATFDGALFSGRRAAEALLLEKGLV 470
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Match: A0A078HSS6_BRANA (BnaC05g43370D protein OS=Brassica napus GN=BnaC05g43370D PE=4 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 2.599e-45 Identity = 77/104 (74.04%), Postives = 87/104 (83.65%), Query Frame = 1 Query: 1 KALASVSLIGLYENTADDDLRAEVIKELSGWFEASKVESWRHLRTYRIGFAQPNQSPPTDLMKNPDIGPGLYLCGDYMTSATFDGALVSGRRAVEALLKDRALA 312 KAL SVSLIG +E+ +DDDL AEV++ELSGWF S V SWRHLRTYRI FAQPNQ PPT+L+KNP +G GLYLCGDYMTSATFDGAL SGRRA EALL ++ L Sbjct: 367 KALVSVSLIGSFEDRSDDDLAAEVLRELSGWFGESLVTSWRHLRTYRIQFAQPNQCPPTELVKNPRVGSGLYLCGDYMTSATFDGALFSGRRAAEALLLEKGLV 470 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0006910 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0006910 ID=g.arboreum_cottongen_reftransV1_0006910; Name=g.arboreum_cottongen_reftransV1_0006910; organism=Gossypium arboreum; type=contig; length=380bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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