g.arboreum_cottongen_reftransV1_0015832, g.arboreum_cottongen_reftransV1_0015832 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0015832
Unique Nameg.arboreum_cottongen_reftransV1_0015832
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1195
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr11chromosomeg.arboreum_cottongen_reftransV1_0015832:1..1195 .
Chr11:69013336..69016350 +
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: A0A0D2Q3W8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G057100 PE=4 SV=1)

HSP 1 Score: 739.954 bits (1909), Expect = 0.000e+0
Identity = 360/372 (96.77%), Postives = 364/372 (97.85%), Query Frame = 2 
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCFVVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDAGLEKLAFPVKAGPKNENMVLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSCIFHDDSQLTFPDNSSLSDAGKLEISNQIVSIAEQILMVSEVECCETLCINMGSQESVSSKPNRVYIERKRGQNDKLKSSNCNRSGTKNTILNFFARV 1117
            FKMDRYGNGEELVLSKVFDSVSSKPSFR+FDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCF+VFSSHKTREKRKTGTMSMKQVVVSTESKYFKDAGLEKLAFPVK  PKNENMVLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSC+F DDSQLTFPDNSSLSD GKLEISNQI SIAEQI M+SEVECCETLCINMGSQESVSSKPNRVY ERKRGQN KLKSSNCNRSGTKNTILNFFARV
Sbjct:  104 FKMDRYGNGEELVLSKVFDSVSSKPSFRSFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCFMVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDAGLEKLAFPVKTRPKNENMVLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSCVFPDDSQLTFPDNSSLSDTGKLEISNQIDSIAEQISMMSEVECCETLCINMGSQESVSSKPNRVYSERKRGQNVKLKSSNCNRSGTKNTILNFFARV 475
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BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: A0A0D2SSJ3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G057100 PE=4 SV=1)

HSP 1 Score: 739.569 bits (1908), Expect = 0.000e+0
Identity = 360/372 (96.77%), Postives = 364/372 (97.85%), Query Frame = 2 
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCFVVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDAGLEKLAFPVKAGPKNENMVLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSCIFHDDSQLTFPDNSSLSDAGKLEISNQIVSIAEQILMVSEVECCETLCINMGSQESVSSKPNRVYIERKRGQNDKLKSSNCNRSGTKNTILNFFARV 1117
            FKMDRYGNGEELVLSKVFDSVSSKPSFR+FDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCF+VFSSHKTREKRKTGTMSMKQVVVSTESKYFKDAGLEKLAFPVK  PKNENMVLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSC+F DDSQLTFPDNSSLSD GKLEISNQI SIAEQI M+SEVECCETLCINMGSQESVSSKPNRVY ERKRGQN KLKSSNCNRSGTKNTILNFFARV
Sbjct:  148 FKMDRYGNGEELVLSKVFDSVSSKPSFRSFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCFMVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDAGLEKLAFPVKTRPKNENMVLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSCVFPDDSQLTFPDNSSLSDTGKLEISNQIDSIAEQISMMSEVECCETLCINMGSQESVSSKPNRVYSERKRGQNVKLKSSNCNRSGTKNTILNFFARV 519
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BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: A0A0D2NMC0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G057100 PE=4 SV=1)

HSP 1 Score: 739.569 bits (1908), Expect = 0.000e+0
Identity = 360/372 (96.77%), Postives = 364/372 (97.85%), Query Frame = 2 
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCFVVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDAGLEKLAFPVKAGPKNENMVLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSCIFHDDSQLTFPDNSSLSDAGKLEISNQIVSIAEQILMVSEVECCETLCINMGSQESVSSKPNRVYIERKRGQNDKLKSSNCNRSGTKNTILNFFARV 1117
            FKMDRYGNGEELVLSKVFDSVSSKPSFR+FDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCF+VFSSHKTREKRKTGTMSMKQVVVSTESKYFKDAGLEKLAFPVK  PKNENMVLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSC+F DDSQLTFPDNSSLSD GKLEISNQI SIAEQI M+SEVECCETLCINMGSQESVSSKPNRVY ERKRGQN KLKSSNCNRSGTKNTILNFFARV
Sbjct:   60 FKMDRYGNGEELVLSKVFDSVSSKPSFRSFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCFMVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDAGLEKLAFPVKTRPKNENMVLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSCVFPDDSQLTFPDNSSLSDTGKLEISNQIDSIAEQISMMSEVECCETLCINMGSQESVSSKPNRVYSERKRGQNVKLKSSNCNRSGTKNTILNFFARV 431
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BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: A0A0D2RXQ4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G057100 PE=4 SV=1)

HSP 1 Score: 738.799 bits (1906), Expect = 0.000e+0
Identity = 360/372 (96.77%), Postives = 364/372 (97.85%), Query Frame = 2 
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCFVVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDAGLEKLAFPVKAGPKNENMVLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSCIFHDDSQLTFPDNSSLSDAGKLEISNQIVSIAEQILMVSEVECCETLCINMGSQESVSSKPNRVYIERKRGQNDKLKSSNCNRSGTKNTILNFFARV 1117
            FKMDRYGNGEELVLSKVFDSVSSKPSFR+FDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCF+VFSSHKTREKRKTGTMSMKQVVVSTESKYFKDAGLEKLAFPVK  PKNENMVLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSC+F DDSQLTFPDNSSLSD GKLEISNQI SIAEQI M+SEVECCETLCINMGSQESVSSKPNRVY ERKRGQN KLKSSNCNRSGTKNTILNFFARV
Sbjct:  191 FKMDRYGNGEELVLSKVFDSVSSKPSFRSFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCFMVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDAGLEKLAFPVKTRPKNENMVLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSCVFPDDSQLTFPDNSSLSDTGKLEISNQIDSIAEQISMMSEVECCETLCINMGSQESVSSKPNRVYSERKRGQNVKLKSSNCNRSGTKNTILNFFARV 562
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BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: A0A0D2RQU1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G057100 PE=4 SV=1)

HSP 1 Score: 710.679 bits (1833), Expect = 0.000e+0
Identity = 346/358 (96.65%), Postives = 350/358 (97.77%), Query Frame = 2 
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCFVVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDAGLEKLAFPVKAGPKNENMVLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSCIFHDDSQLTFPDNSSLSDAGKLEISNQIVSIAEQILMVSEVECCETLCINMGSQESVSSKPNRVYIERKRGQNDKLKSSNCNR 1075
            FKMDRYGNGEELVLSKVFDSVSSKPSFR+FDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCF+VFSSHKTREKRKTGTMSMKQVVVSTESKYFKDAGLEKLAFPVK  PKNENMVLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSC+F DDSQLTFPDNSSLSD GKLEISNQI SIAEQI M+SEVECCETLCINMGSQESVSSKPNRVY ERKRGQN KLKSSNCNR
Sbjct:  191 FKMDRYGNGEELVLSKVFDSVSSKPSFRSFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCFMVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDAGLEKLAFPVKTRPKNENMVLEETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSCVFPDDSQLTFPDNSSLSDTGKLEISNQIDSIAEQISMMSEVECCETLCINMGSQESVSSKPNRVYSERKRGQNVKLKSSNCNR 548
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BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: A0A061FWG9_THECC (5'-3' exonuclease family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_012569 PE=4 SV=1)

HSP 1 Score: 516.153 bits (1328), Expect = 9.038e-177
Identity = 273/395 (69.11%), Postives = 308/395 (77.97%), Query Frame = 2 
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDC-----NNIEPAKFQNS-----VETTDNSRQASCFVVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDAGLEKLAFPVKAGPKNENMVLEETPLKVPNNNPFKKRKFDEM--------TELVSSKGED--EKLEMSCIFHDDSQLTFPDNSSLSDAGKLEI-SNQIVSIAEQILMVSEVECCETLCINMGSQESVSSKPNRVYIERKRGQND--KLKSSNCNRSGTKNTILNFFARV 1117
            FKMDRYGNGEELVL+KVFDS++SKPSFR FDKELF GMCVLAGCDFLPSVPGIGI KAHSLVSKYRNLDRVLSVLKIEKGSQMPEDY+KSFKEA+AVFQHARIYD EI+ LKH+KPLT+QLLQ LDEGLDFLGP+I PSVA+AIAEG LDPTTMEAFD      N+  P +FQ S     +ET D SRQ SCF+VFSSHKTREK KTGT  M+Q  VS E KY +DAGLE+LAFP+K+     N+V E+ PL +PNNNPFKKRK DEM        TEL SS  ED  E+ E+ C+F D++QL FP         K+E+ SNQI S AEQI MVSEVE CETL +N+GSQESVS  P R++  R RG+ND  KLK SNC  S TKN+ILNFFARV
Sbjct:  148 FKMDRYGNGEELVLAKVFDSITSKPSFRGFDKELFIGMCVLAGCDFLPSVPGIGIAKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYSKSFKEAVAVFQHARIYDGEIKGLKHMKPLTKQLLQILDEGLDFLGPEISPSVAIAIAEGILDPTTMEAFDSMATPGNHPVPTEFQASGKRQLLETADISRQESCFLVFSSHKTREKNKTGT--MRQGAVSIEKKYIQDAGLERLAFPLKSQLTKANVVTEDIPL-IPNNNPFKKRKLDEMHIAEAKDTTELASSNDEDEIERSEILCVFPDNTQLAFPGR-------KVEMSSNQIESTAEQISMVSEVESCETLHMNVGSQESVSCNPKRLFSGRGRGKNDKLKLKGSNCKNSETKNSILNFFARV 532
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BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: A0A061FVV8_THECC (5'-3' exonuclease family protein, putative isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_012569 PE=4 SV=1)

HSP 1 Score: 446.047 bits (1146), Expect = 1.444e-149
Identity = 236/338 (69.82%), Postives = 265/338 (78.40%), Query Frame = 2 
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDC-----NNIEPAKFQNS-----VETTDNSRQASCFVVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDAGLEKLAFPVKAGPKNENMVLEETPLKVPNNNPFKKRKFDEM--------TELVSSKGED--EKLEMSCIFHDDSQLTFPDNSSLSDAGKLEI-SNQIVSIAEQILMVSEVE 952
            FKMDRYGNGEELVL+KVFDS++SKPSFR FDKELF GMCVLAGCDFLPSVPGIGI KAHSLVSKYRNLDRVLSVLKIEKGSQMPEDY+KSFKEA+AVFQHARIYD EI+ LKH+KPLT+QLLQ LDEGLDFLGP+I PSVA+AIAEG LDPTTMEAFD      N+  P +FQ S     +ET D SRQ SCF+VFSSHKTREK KTGT  M+Q  VS E KY +DAGLE+LAFP+K+     N+V E+ PL +PNNNPFKKRK DEM        TEL SS  ED  E+ E+ C+F D++QL FP         K+E+ SNQI S AEQI MVSEVE
Sbjct:  191 FKMDRYGNGEELVLAKVFDSITSKPSFRGFDKELFIGMCVLAGCDFLPSVPGIGIAKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYSKSFKEAVAVFQHARIYDGEIKGLKHMKPLTKQLLQILDEGLDFLGPEISPSVAIAIAEGILDPTTMEAFDSMATPGNHPVPTEFQASGKRQLLETADISRQESCFLVFSSHKTREKNKTGT--MRQGAVSIEKKYIQDAGLERLAFPLKSQLTKANVVTEDIPL-IPNNNPFKKRKLDEMHIAEAKDTTELASSNDEDEIERSEILCVFPDNTQLAFPGR-------KVEMSSNQIESTAEQISMVSEVE 518
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BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: A0A0D2SSJ6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G057100 PE=4 SV=1)

HSP 1 Score: 411.379 bits (1056), Expect = 8.383e-138
Identity = 196/198 (98.99%), Postives = 198/198 (100.00%), Query Frame = 2 
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCFVVFSSHKTREKRKTG 595
            FKMDRYGNGEELVLSKVFDSVSSKPSFR+FDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCF+VFSSHKTREKRKTG
Sbjct:  191 FKMDRYGNGEELVLSKVFDSVSSKPSFRSFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCFMVFSSHKTREKRKTG 388
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BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: D7SJ81_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g02690 PE=4 SV=1)

HSP 1 Score: 380.178 bits (975), Expect = 5.506e-124
Identity = 207/385 (53.77%), Postives = 258/385 (67.01%), Query Frame = 2 
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDC-----NNIEPAKFQNS-----VETTDNSRQASCFVVFSSHKTREKRKTGTMSMKQVVVSTESKYFKDA-GLEKLAFPVKAGPKNENMVLE-ETPLKVPNNNPFKKRKFDEMTELVSSKGEDEKLEMSCIFHDDSQLTFPDNSSLSDAGKLEISNQIVSIAEQILMVSEVECCETLCINMGSQESVSSKPNRVYIERKRGQNDKLKSSNCNRSGT-KNTILNFFARV 1117
            FKMDRYGNGEE+VL +VFDSV+  PSF+NFDKELFTGMCVLAGCDFLPSVPGIGI +A+S+V+KYRNLDRVLSVLK EK +QMPEDYTKSF+EA+AVFQHARIYDA+ + ++H+KPLT+ LLQ LD  LDFLGP+IPPS+A AIAEG LDP TMEAFD      +  EP   Q S      E T  S + SCF +FSSH+TRE+R TG    K   V  E+KY  +A  L+K+ FP +     EN + + ETPL++P+NNPFKKRK +E                  I+ D                      QI SI EQI +V +V+  + +C+ + SQESV SKPN+V   +   +N+K K S+C  S + KN+ILNFF+RV
Sbjct:  169 FKMDRYGNGEEMVLDRVFDSVARAPSFQNFDKELFTGMCVLAGCDFLPSVPGIGIARAYSMVAKYRNLDRVLSVLKFEKRNQMPEDYTKSFREAVAVFQHARIYDADTKRVQHMKPLTDDLLQSLDGELDFLGPEIPPSIATAIAEGNLDPVTMEAFDHFSSHESQPEPTVTQTSNEIVKPEATAQSTEESCFTIFSSHETREERVTG----KSRPVIEETKYLNEAVALQKIMFPSEVHGMLENKITQDETPLEIPDNNPFKKRKLNE------------------IYLD----------------------QIPSITEQISVVVDVDNSDIMCVTLESQESVDSKPNKVADRKAISKNEKRKRSDCKSSESKKNSILNFFSRV 509
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BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Match: V4TWE1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007863mg PE=4 SV=1)

HSP 1 Score: 352.829 bits (904), Expect = 1.299e-112
Identity = 201/393 (51.15%), Postives = 272/393 (69.21%), Query Frame = 2 
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSV------ETTDNSRQASCFVVFSSHKTREKRKTGTMSMKQVVVSTESKYF-KDAGLEKLAFPVKAGPKNENM-VLEETPLKVPNNNPFKKRKFDEMT-ELVSSKGED-------EKLEMSCIFHDDSQLTFPDNSSLSDAGKLEI-SNQI---VSIAEQILMVSEVECCETLCINMGSQESVSSKPNRVYIERKRGQNDKLKSSNCNRSGTKNT-ILNFFARV 1117
            FKMDR+GNGEELVL  VF S +  PSFRNFD+ELF GMCVLAGCDFLPS+PGIGI KA+S+VSKYRNLDRVLSVLK+EKGSQ+PEDY+KSF+EA+AVFQHARIYD + ++L+HIKPL ++LLQ +   LDFLGP+IPPS+A AIAEG+LDP  MEAF+ +    +    ++      E T  SR+ + F++F+S KT EK      + K+V VS E  Y  +DA L+KL  P+K    +E + V ++ PL+VPNNNPFKKRK  EM  + + S  ++       EKL++ CI  D   +  P     +++GK ++ SNQ+    SI++++ +++EVE    L +   SQESV+SKP ++   + R + +K K++NC  S  K+T ILNFF RV
Sbjct:  191 FKMDRHGNGEELVLDNVFGSETCTPSFRNFDQELFIGMCVLAGCDFLPSIPGIGIAKAYSMVSKYRNLDRVLSVLKLEKGSQVPEDYSKSFREAVAVFQHARIYDGDAKKLEHIKPLPQKLLQSIGGELDFLGPEIPPSIATAIAEGRLDPVGMEAFNVSLSSQSPVGKTLSRLKKAEITAGSREETGFMLFTSQKTMEK------APKEVPVSCERSYLNEDAALQKLLLPLK---DHETIKVPDDVPLQVPNNNPFKKRKLVEMQLDQIQSNSKEVLVVTDVEKLDVLCITPD---IILPKAPENNNSGKRKLHSNQLDQQQSISKEVSVITEVEDT-NLHVTTESQESVNSKPKKISKGKARSKTEKKKTNNCMSSVNKSTSILNFFPRV 570
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BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: EXO1_ARATH (Exonuclease 1 OS=Arabidopsis thaliana GN=EXO1 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 4.040e-29
Identity = 62/164 (37.80%), Postives = 99/164 (60.37%), Query Frame = 2 
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEP 493
            FKMD++G+G E   SK+    +   S   F  ++   MC+L+GCD+L S+PG+G+ +AH+L++K+++ DRV+  LK    S +P  Y +SFK AL  F+H R+YD    ++ H+  +++     L E  DF+GP +P  +A  IA G+LDP T   F   ++ P
Sbjct:  184 FKMDKFGHGVEFQASKL--PKNKDLSLSGFSSQMLLEMCILSGCDYLQSLPGMGLKRAHALITKFKSYDRVIKHLKYSTVS-VPPLYEESFKRALLTFKHQRVYDPNAEDIIHLCDISDN----LGEDSDFVGPSMPQDIAKGIALGQLDPFTQLPFQAESVTP 340
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: EXO1_ORYSJ (Exonuclease 1 OS=Oryza sativa subsp. japonica GN=EXO1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.548e-26
Identity = 55/158 (34.81%), Postives = 94/158 (59.49%), Query Frame = 2 
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFD 475
            FKMD++G G E  ++++      +     F  ++   MC+L+GCD+LPS+PG+G+ +AH+L+ K +  ++V+  L+    S +P  Y ++F++A+  FQ  R+YD    ++ H+  +         E LDFLGP +P +VA  IA+G +DP T E F+
Sbjct:  184 FKMDKFGQGVEFHITRL--QRCRELDLNGFTMQMLLEMCILSGCDYLPSLPGMGVKRAHALIQKLKGHEKVIKHLRYSAVS-VPPQYEENFRKAIWAFQFQRVYDPVTEDIVHLSGIPHG----SSEDLDFLGPWLPQTVAKGIAQGNIDPITKEPFE 334
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: EXO1_DICDI (Exonuclease 1 OS=Dictyostelium discoideum GN=exo1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.360e-19
Identity = 56/183 (30.60%), Postives = 94/183 (51.37%), Query Frame = 2 
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQL-LQYLDEG------------------------LDFLGPKIPPSVAVAIAEGKLDPTTMEAFD 475
            FKMD+YG  +E+    +         F +F++ +   MC+L+GCD+LPS+ G+G+  +  L+ ++R++++V   LK EK S   ++Y + F +A   F+H R++D   R L  + PL   +  ++L++                         LDF+GP I   +A  IA G +DP T E FD
Sbjct:  184 FKMDKYGYAQEIKTEDLGSCKKDGYDFIDFNQTMLRQMCILSGCDYLPSLSGMGLKTSFKLLKQHRDIEKVFKYLKREK-SNFSQEYEQQFYKADFTFKHQRVFDPVSRILTTLLPLPTIIDSRFLNDNNNNTNDGDSNGDGSSGGSGSGGGFLDFIGPVIDDEIAEKIALGIIDPETHEQFD 365
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: EXO1_XENLA (Exonuclease 1 OS=Xenopus laevis GN=exo1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.325e-14
Identity = 58/183 (31.69%), Postives = 91/183 (49.73%), Query Frame = 2 
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKI----EKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIE-PAKFQNSVETTDNSR 535
             KMD++GNG E+  ++ F    S      F +E F  MC+L+GCD+LPS+ GIG+ KA  L+    N D    + KI    +    +PE Y + F  A   F +  ++D   R+L  + P    +     E L++ GP +  SVA+ IA G +D  T +  D  N + P    +  ++ DN +
Sbjct:  184 LKMDKFGNGLEIDQAR-FGMCRSLGDV--FTEEKFRYMCILSGCDYLPSIHGIGLAKACKLLKVANNPDITKVIQKIGQYLKTNITVPEGYIEGFLRANNTFLYQLVFDPVERKLIPLNPYGNDV---NPEELNYAGPNMGDSVALQIALGNMDINTRKQIDDYNPDIPQLSHHRSQSWDNKQ 360
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: EXO1_HUMAN (Exonuclease 1 OS=Homo sapiens GN=EXO1 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.147e-12
Identity = 67/213 (31.46%), Postives = 95/213 (44.60%), Query Frame = 2 
Query:    2 FKMDRYGNGEE-----LVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQM----PEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPA--KFQNSVETTDNSRQASCFVVFSSHKTREKR-KTGTMS 604
             KMD++GNG E     L + +    V        F +E F  MC+L+GCD+L S+ GIG+ KA  ++    N D V  + KI    +M    PEDY   F  A   F +  ++D   R+L    PL         E L + G  +  S+A+ IA G  D  T E  D  N + A      S    D + Q S  V    H+    R ++GT+S
Sbjct:  184 LKMDQFGNGLEIDQARLGMCRQLGDV--------FTEEKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIRANNTFLYQLVFDPIKRKL---IPLNAYEDDVDPETLSYAGQYVDDSIALQIALGNKDINTFEQIDDYNPDTAMPAHSRSHSWDDKTCQKSANVSSIWHRNYSPRPESGTVS 385
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: EXO1_MOUSE (Exonuclease 1 OS=Mus musculus GN=Exo1 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.704e-12
Identity = 57/167 (34.13%), Postives = 77/167 (46.11%), Query Frame = 2 
Query:    2 FKMDRYGNGEE-----LVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQM----PEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFD 475
             KMD++GNG E     L + K    V        F +E F  MC+L+GCD+L S+ GIG+ KA  ++    N D V  + KI    +M    PEDY   F  A   F +  ++D   R+L    PL         E L + G  +  SVA+ IA G  D  T E  D
Sbjct:  184 LKMDQFGNGLEVDQARLGMCKQLGDV--------FTEEKFRYMCILSGCDYLASLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLRMNITVPEDYITGFIRANNTFLYQLVFDPIQRKL---VPLNAYGDDVNPETLTYAGQYVGDSVALQIALGNRDVNTFEQID 339
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: EXO1_SCHPO (Exodeoxyribonuclease 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=exo1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.280e-11
Identity = 48/174 (27.59%), Postives = 84/174 (48.28%), Query Frame = 2 
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETT 523
            FKMD +GN    +  +  D  +++        E    M + +GCD+   V G+G+  A   + KY      +  ++++K  ++P  + K F  A   F+H R+Y  + + L H+ P   +L  + D    F+G      +A+ IAEG+ +P T  AFD   I+ +  Q+  +TT
Sbjct:  184 FKMDGFGN---CITIRRNDIANAQDLNLRLPIEKLRHMAIFSGCDYTDGVAGMGLKTALRYLQKYPEPRAAIRAMRLDKSLKVPVSFEKEFALADLAFRHQRVYCPKDKTLVHLSPPERELSVHEDA---FIGSFFDNQLAIDIAEGRSNPITKCAFD---IKDSSMQSFTKTT 348
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: EXO1_DROME (Exonuclease 1 OS=Drosophila melanogaster GN=tos PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.209e-11
Identity = 57/204 (27.94%), Postives = 97/204 (47.55%), Query Frame = 2 
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRNFDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIE-----KGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLT--EQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFDCNNIEPAKFQNSVETTDNSRQASCFVV-FSSHKTREKRK 589
            FK+D  G+G  +   K+  ++       +FDK  F  MC+L+GCD+L S+PGIG+ KA   + K    D  +++ KI      +  ++ +DY ++F +A A F+H  IY+   R ++ +  L   E   +Y       L        A+ +A G L+P +M+  D  +  P K   + +    S+  S +   F S  T   +K
Sbjct:  184 FKLDLNGSGLLVEAEKLHLAMGCTEEKYHFDK--FRRMCILSGCDYLDSLPGIGLAKACKFILKTEQEDMRIALKKIPSYLNMRNLEVDDDYIENFMKAEATFRHMFIYNPLERRMQRLCALEDYETDERYCSNAGTLLEDS---EQALHLALGNLNPFSMKRLD--SWTPEKAWPTPKNVKRSKHKSIWQTNFQSENTHTPKK 380
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: EXO1_DANRE (Exonuclease 1 OS=Danio rerio GN=exo1 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 3.210e-10
Identity = 49/164 (29.88%), Postives = 80/164 (48.78%), Query Frame = 2 
Query:    2 FKMDRYGNGEELVLSKVFDSVSSKPSFRN-FDKELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLK-----IEKGSQMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDFLGPKIPPSVAVAIAEGKLDPTTMEAFD 475
             KMD+ GNG E+    +        S  N F +E F  MC+L+GCD+L S+ GIG+ KA  L+    N D +L V+K     ++    +PE+Y + F +A   F +  ++D   R++  + P  + +       L + G  +     + +A G LD  TM+  D
Sbjct:  184 LKMDKQGNGLEIEQCHL----GRCKSLGNIFTEEKFRYMCILSGCDYLQSLYGIGLGKACKLLRMANNPD-ILKVIKKMGQYLKMDISVPEEYIEGFTKANNTFLYQLVFDPLRRKVVPLNPYPDHI---NPAALSYAGTNVGDEKGLQMALGNLDINTMQRID 339
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Match: FEN1_CANTT (Flap endonuclease 1 OS=Candida tropicalis (strain ATCC MYA-3404 / T1) GN=RAD27 PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.296e-8
Identity = 36/119 (30.25%), Postives = 66/119 (55.46%), Query Frame = 2 
Query:   53 FDSVSSKPSFRNFD--KELFTGMCVLAGCDFLPSVPGIGIVKAHSLVSKYRNLDRVLSVLKIEKGS---QMPEDYTKSFKEALAVFQHARIYDAEIRELKHIKPLTEQLLQYLDEGLDF 394
             D +S K +    D  KE F  +C+L GCD+  ++ G+G V A+ L+ ++ +L++++    IEKG+    +PE++   + EA  +F +  +  A    LK  +P  E L++Y+ +G  F
Sbjct:  205 IDEISYKEAMAGLDMNKEQFVDLCILLGCDYCETIRGVGPVTAYKLIKEHGSLEKIVEW--IEKGNTKYTVPENW--PYAEARELFLNPEVKKASDISLKWKEPDVEGLIEYMVKGKGF 319
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2Q3W8_GOSRA0.000e+096.77Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2SSJ3_GOSRA0.000e+096.77Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2NMC0_GOSRA0.000e+096.77Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2RXQ4_GOSRA0.000e+096.77Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2RQU1_GOSRA0.000e+096.65Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061FWG9_THECC9.038e-17769.115'-3' exonuclease family protein, putative isoform... [more]
A0A061FVV8_THECC1.444e-14969.825'-3' exonuclease family protein, putative isoform... [more]
A0A0D2SSJ6_GOSRA8.383e-13898.99Uncharacterized protein OS=Gossypium raimondii GN=... [more]
D7SJ81_VITVI5.506e-12453.77Putative uncharacterized protein OS=Vitis vinifera... [more]
V4TWE1_9ROSI1.299e-11251.15Uncharacterized protein OS=Citrus clementina GN=CI... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0015832 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
EXO1_ARATH4.040e-2937.80Exonuclease 1 OS=Arabidopsis thaliana GN=EXO1 PE=2... [more]
EXO1_ORYSJ2.548e-2634.81Exonuclease 1 OS=Oryza sativa subsp. japonica GN=E... [more]
EXO1_DICDI2.360e-1930.60Exonuclease 1 OS=Dictyostelium discoideum GN=exo1 ... [more]
EXO1_XENLA1.325e-1431.69Exonuclease 1 OS=Xenopus laevis GN=exo1 PE=2 SV=1[more]
EXO1_HUMAN1.147e-1231.46Exonuclease 1 OS=Homo sapiens GN=EXO1 PE=1 SV=2[more]
EXO1_MOUSE1.704e-1234.13Exonuclease 1 OS=Mus musculus GN=Exo1 PE=2 SV=2[more]
EXO1_SCHPO1.280e-1127.59Exodeoxyribonuclease 1 OS=Schizosaccharomyces pomb... [more]
EXO1_DROME4.209e-1127.94Exonuclease 1 OS=Drosophila melanogaster GN=tos PE... [more]
EXO1_DANRE3.210e-1029.88Exonuclease 1 OS=Danio rerio GN=exo1 PE=2 SV=1[more]
FEN1_CANTT1.296e-830.25Flap endonuclease 1 OS=Candida tropicalis (strain ... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008918Helix-hairpin-helix motif, class 2SMARTSM00279HhH_4coord: 30..63
e-value: 6.1E-4
score: 29.1
NoneNo IPR availableGENE3D1.10.150.20coord: 29..92
e-value: 1.6E-7
score: 30.7
NoneNo IPR availablePANTHERPTHR11081:SF275'-3' EXONUCLEASE FAMILY PROTEINcoord: 1..255
NoneNo IPR availablePANTHERPTHR11081:SF275'-3' EXONUCLEASE FAMILY PROTEINcoord: 296..370
IPR006084XPG/Rad2 endonucleasePANTHERPTHR11081XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILYcoord: 296..370
IPR006084XPG/Rad2 endonucleasePANTHERPTHR11081XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILYcoord: 1..255
IPR0200455'-3' exonuclease, C-terminal domainSUPERFAMILY478075' to 3' exonuclease, C-terminal subdomaincoord: 29..156

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0015832 ID=g.arboreum_cottongen_reftransV1_0015832; Name=g.arboreum_cottongen_reftransV1_0015832; organism=Gossypium arboreum; type=contig; length=1195bp
ATTTAAAATGGACCGTTATGGCAATGGAGAAGAACTGGTTCTGTCAAAAG
TTTTTGATTCTGTATCCAGTAAACCTTCCTTCAGAAATTTTGATAAAGAA
TTGTTTACAGGTATGTGTGTCCTAGCTGGATGTGATTTCCTTCCATCGGT
TCCTGGAATTGGTATTGTAAAGGCACATTCCTTAGTTTCCAAGTATCGGA
ACTTAGACCGTGTTTTATCAGTTTTGAAGATTGAGAAGGGCAGTCAGATG
CCAGAAGATTACACCAAATCGTTCAAAGAAGCACTTGCAGTTTTTCAGCA
TGCCAGAATATATGATGCTGAAATCAGGGAGCTGAAACATATTAAACCTC
TTACAGAACAACTTCTGCAATATCTAGATGAAGGGCTTGATTTCCTGGGA
CCAAAAATCCCTCCATCAGTGGCAGTTGCGATTGCTGAAGGAAAGTTAGA
CCCCACTACAATGGAAGCCTTTGACTGTAATAATATAGAGCCTGCTAAGT
TTCAAAATTCTGTTGAAACTACTGATAATTCCAGACAAGCAAGCTGCTTC
GTGGTATTTTCTTCACATAAAACCAGAGAAAAAAGGAAGACAGGTACAAT
GAGCATGAAGCAAGTTGTAGTTTCAACTGAAAGCAAGTATTTTAAAGATG
CTGGATTGGAAAAATTAGCATTTCCAGTAAAAGCTGGTCCGAAAAATGAG
AATATGGTTTTAGAGGAAACTCCATTGAAGGTTCCAAATAATAACCCTTT
CAAGAAGAGAAAATTTGATGAAATGACTGAACTAGTTTCATCAAAAGGCG
AAGATGAGAAGTTGGAAATGTCATGTATTTTTCATGATGATAGTCAATTG
ACATTTCCTGACAATAGTAGTTTAAGTGATGCCGGGAAACTTGAAATCTC
TAATCAGATAGTTAGCATTGCTGAACAAATTTTAATGGTGAGTGAGGTAG
AATGTTGTGAGACCTTGTGCATCAATATGGGATCCCAAGAAAGTGTCAGC
TCTAAGCCAAACAGAGTGTACATTGAAAGAAAAAGAGGTCAAAATGACAA
GCTGAAGAGCAGTAATTGCAACAGGTCAGGGACTAAGAACACTATTTTGA
ACTTCTTTGCTCGTGTGTGATCATCCTATCTGTTTAATTCAAACAACTGA
TGCCACATTGACATCTGTACTGTTTAACCTTTATACTAGTTGGAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR008918HhH2
IPR006084XPG/Rad2
IPR020045DNA_polI_H3TH
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003824catalytic activity
GO:0004518nuclease activity
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair