g.arboreum_cottongen_reftransV1_0019868, g.arboreum_cottongen_reftransV1_0019868 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0019868
Unique Nameg.arboreum_cottongen_reftransV1_0019868
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length428
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr10chromosomeg.arboreum_cottongen_reftransV1_0019868:1..428 .
Chr10:36263957..36265072 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A0B0MUW9_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_24268 PE=4 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 7.160e-74
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1
Query:   91 MGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426
            MGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS
Sbjct:    1 MGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 112          
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A0D2QNB4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G0845001 PE=4 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 4.046e-63
Identity = 96/100 (96.00%), Postives = 97/100 (97.00%), Query Frame = 1
Query:   91 MGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLP 390
            MGYAMSRLEIESELFEGGNVT+EAGCSNR DKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFS ADRCHMISRY P
Sbjct:    1 MGYAMSRLEIESELFEGGNVTNEAGCSNRFDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSLADRCHMISRYFP 100          
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A061DPZ0_THECC (LEC14B protein, putative isoform 4 OS=Theobroma cacao GN=TCM_004491 PE=4 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 1.070e-58
Identity = 95/117 (81.20%), Postives = 103/117 (88.03%), Query Frame = 1
Query:   76 VAIVEMGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426
            V I EMGYAMSRLEIESELF+G  VT+EAG S RS+KP   VDHEIAQLTNL+S P+ERL QLMPGK++LPVSPVKMLAGREGNYS RG FSSADRCHM+SRYLPVNGPWL DQMTS
Sbjct:    8 VDIDEMGYAMSRLEIESELFDGSKVTNEAGSSTRSNKPLHNVDHEIAQLTNLRSGPHERLRQLMPGKQQLPVSPVKMLAGREGNYSGRGRFSSADRCHMLSRYLPVNGPWLVDQMTS 124          
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A061DQ96_THECC (LEC14B protein, putative isoform 5 OS=Theobroma cacao GN=TCM_004491 PE=4 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 3.240e-57
Identity = 92/112 (82.14%), Postives = 100/112 (89.29%), Query Frame = 1
Query:   91 MGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426
            MGYAMSRLEIESELF+G  VT+EAG S RS+KP   VDHEIAQLTNL+S P+ERL QLMPGK++LPVSPVKMLAGREGNYS RG FSSADRCHM+SRYLPVNGPWL DQMTS
Sbjct:    1 MGYAMSRLEIESELFDGSKVTNEAGSSTRSNKPLHNVDHEIAQLTNLRSGPHERLRQLMPGKQQLPVSPVKMLAGREGNYSGRGRFSSADRCHMLSRYLPVNGPWLVDQMTS 112          
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A061DXY5_THECC (Transducin family protein / WD-40 repeat family protein isoform 3 OS=Theobroma cacao GN=TCM_004491 PE=4 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 6.869e-57
Identity = 92/112 (82.14%), Postives = 100/112 (89.29%), Query Frame = 1
Query:   91 MGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426
            MGYAMSRLEIESELF+G  VT+EAG S RS+KP   VDHEIAQLTNL+S P+ERL QLMPGK++LPVSPVKMLAGREGNYS RG FSSADRCHM+SRYLPVNGPWL DQMTS
Sbjct:    1 MGYAMSRLEIESELFDGSKVTNEAGSSTRSNKPLHNVDHEIAQLTNLRSGPHERLRQLMPGKQQLPVSPVKMLAGREGNYSGRGRFSSADRCHMLSRYLPVNGPWLVDQMTS 112          
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A061DS04_THECC (Transducin family protein / WD-40 repeat family protein isoform 1 OS=Theobroma cacao GN=TCM_004491 PE=4 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 2.163e-56
Identity = 92/112 (82.14%), Postives = 100/112 (89.29%), Query Frame = 1
Query:   91 MGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426
            MGYAMSRLEIESELF+G  VT+EAG S RS+KP   VDHEIAQLTNL+S P+ERL QLMPGK++LPVSPVKMLAGREGNYS RG FSSADRCHM+SRYLPVNGPWL DQMTS
Sbjct:    1 MGYAMSRLEIESELFDGSKVTNEAGSSTRSNKPLHNVDHEIAQLTNLRSGPHERLRQLMPGKQQLPVSPVKMLAGREGNYSGRGRFSSADRCHMLSRYLPVNGPWLVDQMTS 112          
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A061DR32_THECC (Transducin family protein / WD-40 repeat family protein isoform 2 OS=Theobroma cacao GN=TCM_004491 PE=4 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 2.349e-56
Identity = 92/112 (82.14%), Postives = 100/112 (89.29%), Query Frame = 1
Query:   91 MGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426
            MGYAMSRLEIESELF+G  VT+EAG S RS+KP   VDHEIAQLTNL+S P+ERL QLMPGK++LPVSPVKMLAGREGNYS RG FSSADRCHM+SRYLPVNGPWL DQMTS
Sbjct:    1 MGYAMSRLEIESELFDGSKVTNEAGSSTRSNKPLHNVDHEIAQLTNLRSGPHERLRQLMPGKQQLPVSPVKMLAGREGNYSGRGRFSSADRCHMLSRYLPVNGPWLVDQMTS 112          
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A0B0MQM6_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_27027 PE=4 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.183e-55
Identity = 90/117 (76.92%), Postives = 100/117 (85.47%), Query Frame = 1
Query:   76 VAIVEMGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426
            V I EMGYAMSRLEIESELF+GGN   EA  S R  KPF KVD EI+QLTNL+S PN+RLHQL+PGK++LPVSPV+MLAGREGNYS +G FSSADRCHM+SRYLPVNGPWL DQ TS
Sbjct:    8 VDIDEMGYAMSRLEIESELFDGGNTVHEASSSTRPGKPFPKVDDEISQLTNLRSGPNDRLHQLVPGKQQLPVSPVRMLAGREGNYSGKGRFSSADRCHMLSRYLPVNGPWLVDQTTS 124          
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A0D2R6L9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G007100 PE=4 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 6.340e-53
Identity = 88/117 (75.21%), Postives = 98/117 (83.76%), Query Frame = 1
Query:   76 VAIVEMGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426
            V I EMGYAMSRLEIESELF+GGN   EA  S R  K F KVD EI+QLTNL+S PN+RLHQL+PGK++LPVSPV+MLAGRE NYS +G FSSADRCHM+SRYLPVNGPWL DQ TS
Sbjct:    8 VDIDEMGYAMSRLEIESELFDGGNTVHEASSSTRPGKLFPKVDDEISQLTNLRSGPNDRLHQLVPGKQQLPVSPVRMLAGRESNYSGKGRFSSADRCHMLSRYLPVNGPWLVDQTTS 124          
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A061DR36_THECC (LEC14B protein, putative isoform 7 (Fragment) OS=Theobroma cacao GN=TCM_004491 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.619e-52
Identity = 86/107 (80.37%), Postives = 95/107 (88.79%), Query Frame = 1
Query:  106 SRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426
            +RLEIESELF+G  VT+EAG S RS+KP   VDHEIAQLTNL+S P+ERL QLMPGK++LPVSPVKMLAGREGNYS RG FSSADRCHM+SRYLPVNGPWL DQMTS
Sbjct:    9 NRLEIESELFDGSKVTNEAGSSTRSNKPLHNVDHEIAQLTNLRSGPHERLRQLMPGKQQLPVSPVKMLAGREGNYSGRGRFSSADRCHMLSRYLPVNGPWLVDQMTS 115          
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy Swiss-Prot
Match: LE14B_LITER (LEC14B protein OS=Lithospermum erythrorhizon PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.872e-27
Identity = 59/112 (52.68%), Postives = 76/112 (67.86%), Query Frame = 1
Query:   91 MGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426
            MGYAMSR E +  +    +  SE    +  +KP   +DHEIAQLT L+S P+E L + +  K+ LP+S +KMLAGRE N S RG FSSAD CH++SR+LPVN P + DQMTS
Sbjct:    1 MGYAMSRFETDVSVIFSSSSDSETSHDSLINKPVKNLDHEIAQLTRLRSAPHENLSRDLLVKRVLPLSTMKMLAGREANVSGRGRFSSADCCHVVSRHLPVNDPCVVDQMTS 112          
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy Swiss-Prot
Match: LE14B_PRUAR (LEC14B homolog OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.002e-26
Identity = 54/107 (50.47%), Postives = 70/107 (65.42%), Query Frame = 1
Query:  106 SRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426
            +R   ++   + GN    +G S   ++     DHEIAQLT  +S P++ L Q MPGK +L VS +KML GRE N+S RG FSSAD CH++SRYLP+NGPW  DQ TS
Sbjct:    5 TRFGKDNSACDSGNAVEGSGSSKGPNEVSNDFDHEIAQLTKHRSRPHQLLSQDMPGKSRLLVSTMKMLVGRESNHSGRGRFSSADGCHVLSRYLPINGPWGVDQSTS 111          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0MUW9_GOSAR7.160e-74100.00Uncharacterized protein OS=Gossypium arboreum GN=F... [more]
A0A0D2QNB4_GOSRA4.046e-6396.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061DPZ0_THECC1.070e-5881.20LEC14B protein, putative isoform 4 OS=Theobroma ca... [more]
A0A061DQ96_THECC3.240e-5782.14LEC14B protein, putative isoform 5 OS=Theobroma ca... [more]
A0A061DXY5_THECC6.869e-5782.14Transducin family protein / WD-40 repeat family pr... [more]
A0A061DS04_THECC2.163e-5682.14Transducin family protein / WD-40 repeat family pr... [more]
A0A061DR32_THECC2.349e-5682.14Transducin family protein / WD-40 repeat family pr... [more]
A0A0B0MQM6_GOSAR3.183e-5576.92Uncharacterized protein OS=Gossypium arboreum GN=F... [more]
A0A0D2R6L9_GOSRA6.340e-5375.21Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061DR36_THECC1.619e-5280.37LEC14B protein, putative isoform 7 (Fragment) OS=T... [more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
LE14B_LITER5.872e-2752.68LEC14B protein OS=Lithospermum erythrorhizon PE=2 ... [more]
LE14B_PRUAR2.002e-2650.47LEC14B homolog OS=Prunus armeniaca PE=2 SV=1[more]
back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR19847WD40 REPEAT PROTEINcoord: 44..119
NoneNo IPR availablePANTHERPTHR19847:SF9SUBFAMILY NOT NAMEDcoord: 44..119

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0019868 ID=g.arboreum_cottongen_reftransV1_0019868; Name=g.arboreum_cottongen_reftransV1_0019868; organism=Gossypium arboreum; type=contig; length=428bp
TGTTAATCTCAGTCTGACTGAATCTCAGCAAAATCCAAGGCTTCAACACT
CCGTAACACAATTATTAGCCTGTGGGTTGCCATTGTTGAAATGGGGTATG
CCATGAGTAGGCTGGAGATAGAATCTGAGTTGTTTGAAGGCGGTAATGTC
ACCAGTGAAGCTGGTTGCAGTAACAGGTCCGACAAACCATTCTGTAAAGT
AGACCACGAGATTGCCCAGCTTACAAACCTTAAATCAGTGCCTAATGAAC
GATTGCATCAACTCATGCCAGGAAAGAAAAAATTACCTGTTTCCCCAGTG
AAAATGTTGGCAGGTCGAGAAGGTAATTATTCAAGAAGAGGAGGATTCTC
ATCAGCAGATCGTTGTCACATGATTAGCCGATATTTGCCGGTAAATGGTC
CTTGGCTTGCGGACCAGATGACCAGCCG
back to top