g.arboreum_cottongen_reftransV1_0016674, g.arboreum_cottongen_reftransV1_0016674 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0016674
Unique Nameg.arboreum_cottongen_reftransV1_0016674
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length617
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr10chromosomeg.arboreum_cottongen_reftransV1_0016674:1..617 .
Chr10:15437580..15438865 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: A0A0D2UMC3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G148000 PE=4 SV=1)

HSP 1 Score: 383.259 bits (983), Expect = 3.478e-127
Identity = 201/205 (98.05%), Postives = 203/205 (99.02%), Query Frame = -1
Query:    3 RKLASHCXXXXXXXXXXXXXXXKGNSGFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 617
            RKLASHCKSKLWKQMKMGKKAKKGNSGFDDNGYKKN TSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANI PAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIE+TLKMICKVIVVNPLDL+CNCYGSHV
Sbjct:   38 RKLASHCKSKLWKQMKMGKKAKKGNSGFDDNGYKKNATSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIIPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEETLKMICKVIVVNPLDLMCNCYGSHV 242          
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: A0A0D2TK62_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G148000 PE=4 SV=1)

HSP 1 Score: 383.645 bits (984), Expect = 1.030e-126
Identity = 201/205 (98.05%), Postives = 203/205 (99.02%), Query Frame = -1
Query:    3 RKLASHCXXXXXXXXXXXXXXXKGNSGFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 617
            RKLASHCKSKLWKQMKMGKKAKKGNSGFDDNGYKKN TSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANI PAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIE+TLKMICKVIVVNPLDL+CNCYGSHV
Sbjct:   38 RKLASHCKSKLWKQMKMGKKAKKGNSGFDDNGYKKNATSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIIPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEETLKMICKVIVVNPLDLMCNCYGSHV 242          
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: A0A0D2TQC4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G148000 PE=4 SV=1)

HSP 1 Score: 385.571 bits (989), Expect = 4.872e-126
Identity = 201/205 (98.05%), Postives = 203/205 (99.02%), Query Frame = -1
Query:    3 RKLASHCXXXXXXXXXXXXXXXKGNSGFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 617
            RKLASHCKSKLWKQMKMGKKAKKGNSGFDDNGYKKN TSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANI PAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIE+TLKMICKVIVVNPLDL+CNCYGSHV
Sbjct:   38 RKLASHCKSKLWKQMKMGKKAKKGNSGFDDNGYKKNATSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIIPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEETLKMICKVIVVNPLDLMCNCYGSHV 242          
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: A0A0D2QGG7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G148000 PE=4 SV=1)

HSP 1 Score: 385.185 bits (988), Expect = 5.972e-126
Identity = 201/205 (98.05%), Postives = 203/205 (99.02%), Query Frame = -1
Query:    3 RKLASHCXXXXXXXXXXXXXXXKGNSGFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 617
            RKLASHCKSKLWKQMKMGKKAKKGNSGFDDNGYKKN TSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANI PAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIE+TLKMICKVIVVNPLDL+CNCYGSHV
Sbjct:   38 RKLASHCKSKLWKQMKMGKKAKKGNSGFDDNGYKKNATSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIIPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEETLKMICKVIVVNPLDLMCNCYGSHV 242          
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: A0A0D2TK64_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G148000 PE=4 SV=1)

HSP 1 Score: 379.022 bits (972), Expect = 4.572e-124
Identity = 178/182 (97.80%), Postives = 180/182 (98.90%), Query Frame = -1
Query:    3 GNSGFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 548
            GNSGFDDNGYKKN TSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANI PAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIE+TLKMICKVIVVNPLDL+CNCYGSHV
Sbjct:   10 GNSGFDDNGYKKNATSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIIPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEETLKMICKVIVVNPLDLMCNCYGSHV 191          
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: A0A061GCT4_THECC (Pumilio 23, putative isoform 1 OS=Theobroma cacao GN=TCM_029253 PE=4 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 2.316e-102
Identity = 151/178 (84.83%), Postives = 164/178 (92.13%), Query Frame = -1
Query:    3 FDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 536
            FD +GY K V  QVT+GTGKFKKS KH  NSDSQ  +IRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKE ELATDYIIS+TLQTLL+GC++D+LCSFL+GCAN+FPAIAMDRSGSHVAETA KSLARHVQDTE Y IIE+TLKMICKVIVVNP+DL+CNCYGSHV
Sbjct:   12 FDGDGYNKKVAGQVTNGTGKFKKSSKHQSNSDSQTSLIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKELELATDYIISHTLQTLLEGCDVDHLCSFLKGCANVFPAIAMDRSGSHVAETALKSLARHVQDTEDYAIIEETLKMICKVIVVNPVDLMCNCYGSHV 189          
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: A0A067EF31_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003928mg PE=4 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 1.614e-80
Identity = 122/179 (68.16%), Postives = 148/179 (82.68%), Query Frame = -1
Query:    3 GFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 539
            GFD +   KN +    DG+   +KS+KH   SD +  V+RKQV+P+ AKYF+EI+NLFES  VD+EERSV+C NALEE RGKE ELATDYIIS+TLQTLL+GC++D+LCSFLRGCA +FPAIAMDRSGSHVAETA KSLA H+QD  A++IIE+TLK ICKVIV NP+D++CNCYGSHV
Sbjct:   51 GFDADNSNKNSSGHGADGSASARKSWKHQNASDPKTSVVRKQVDPDLAKYFAEISNLFESNEVDLEERSVLCRNALEETRGKELELATDYIISHTLQTLLEGCDVDHLCSFLRGCAKVFPAIAMDRSGSHVAETALKSLAMHLQDEHAHSIIEETLKSICKVIVANPVDVMCNCYGSHV 229          
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: V4SHF6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024928mg PE=4 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.947e-80
Identity = 122/179 (68.16%), Postives = 148/179 (82.68%), Query Frame = -1
Query:    3 GFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 539
            GFD +   KN +    DG+   +KS+KH   SD +  V+RKQV+P+ AKYF+EI+NLFES  VD+EERSV+C NALEE RGKE ELATDYIIS+TLQTLL+GC++D+LCSFLRGCA +FPAIAMDRSGSHVAETA KSLA H+QD  A++IIE+TLK ICKVIV NP+D++CNCYGSHV
Sbjct:   51 GFDADNSNKNSSGHGADGSASARKSWKHQNASDPKTSVVRKQVDPDLAKYFAEISNLFESNEVDLEERSVLCRNALEETRGKELELATDYIISHTLQTLLEGCDVDHLCSFLRGCAKVFPAIAMDRSGSHVAETALKSLAMHLQDEHAHSIIEETLKSICKVIVANPVDVMCNCYGSHV 229          
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: B9GY00_POPTR (Pumilio/Puf RNA-binding domain-containing family protein OS=Populus trichocarpa GN=POPTR_0003s07060g PE=4 SV=2)

HSP 1 Score: 257.299 bits (656), Expect = 5.015e-77
Identity = 122/182 (67.03%), Postives = 145/182 (79.67%), Query Frame = -1
Query:    3 GNSGFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 548
            G+ GFD +   K+V+ + TDGT K KKS K+        P I   V+PET KYFSEI NLFES GVD+EER VICGNALEEARGKEFELATDY IS+TLQ LL+GCN+D+LC FL+GCA +FP I+MDRSGSHVAETA KSLA H+QD EAY++IE+TL  ICKVIV +P+D++CNCYGSHV
Sbjct:   49 GSFGFDADNSNKSVSGRATDGTAKPKKSSKYQNTFSEPQPSI---VDPETTKYFSEIVNLFESDGVDLEERPVICGNALEEARGKEFELATDYYISHTLQILLEGCNVDHLCDFLQGCAKVFPLISMDRSGSHVAETALKSLAMHLQDDEAYSVIEETLTNICKVIVASPVDMMCNCYGSHV 227          
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Match: A0A067KWN7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24625 PE=4 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.091e-76
Identity = 123/178 (69.10%), Postives = 143/178 (80.34%), Query Frame = -1
Query:    3 FDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 536
            FD +   KNV+     GT + KKS KH    + Q  VIRKQV+PET KYFSEIANL ES GVD EERSVICGNALEEA+GKEFELATDYIIS+T QTLL+GC++++LC FL+ CANIFP IAMDRSGSHVAETA KSLA  +QD EA++ IE+TL  ICKVIV NP+D++CNCYGSHV
Sbjct:   28 FDGDNSNKNVSG---PGTFRPKKSSKHQNTLEPQPLVIRKQVDPETVKYFSEIANLLESNGVDFEERSVICGNALEEAKGKEFELATDYIISHTFQTLLEGCDIEHLCGFLQSCANIFPLIAMDRSGSHVAETALKSLATQLQDNEAFSAIEETLTTICKVIVANPVDMMCNCYGSHV 202          
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy Swiss-Prot
Match: PUM23_ARATH (Pumilio homolog 23 OS=Arabidopsis thaliana GN=APUM23 PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.966e-73
Identity = 113/182 (62.09%), Postives = 143/182 (78.57%), Query Frame = -1
Query:    3 GNSGFDDNGYKKNVTSQVTDGTGKFKKSFKHHQNSDSQAPVIRKQVEPETAKYFSEIANLFESQGVDVEERSVICGNALEEARGKEFELATDYIISNTLQTLLDGCNLDNLCSFLRGCANIFPAIAMDRSGSHVAETAFKSLARHVQDTEAYTIIEDTLKMICKVIVVNPLDLICNCYGSHV 548
            GN GFD +  KKN +     G    K + K H   + Q   +RK+++PET+KYFSEIANLF+S  V++EERSVICGNALEE RG+E+E+ATDYIIS+ LQTLL+GC LD LCSF+R  A++FPAIAMDRSGSHVAE+A KSLA H+++ +AY++IE+ L  ICKVIV NPLD++CNCYGSHV
Sbjct:   47 GNRGFDVDSSKKNQSG----GAPNVKPASKKHSEFEHQNQFVRKEIDPETSKYFSEIANLFDSNEVELEERSVICGNALEETRGREYEIATDYIISHVLQTLLEGCELDQLCSFIRNSASVFPAIAMDRSGSHVAESALKSLATHLENPDAYSVIEEALHSICKVIVDNPLDMMCNCYGSHV 224          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2UMC3_GOSRA3.478e-12798.05Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2TK62_GOSRA1.030e-12698.05Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2TQC4_GOSRA4.872e-12698.05Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2QGG7_GOSRA5.972e-12698.05Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2TK64_GOSRA4.572e-12497.80Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061GCT4_THECC2.316e-10284.83Pumilio 23, putative isoform 1 OS=Theobroma cacao ... [more]
A0A067EF31_CITSI1.614e-8068.16Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
V4SHF6_9ROSI1.947e-8068.16Uncharacterized protein OS=Citrus clementina GN=CI... [more]
B9GY00_POPTR5.015e-7767.03Pumilio/Puf RNA-binding domain-containing family p... [more]
A0A067KWN7_JATCU1.091e-7669.10Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0016674 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PUM23_ARATH1.966e-7362.09Pumilio homolog 23 OS=Arabidopsis thaliana GN=APUM... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 50..191
e-value: 3.6E-27
score: 94.6
NoneNo IPR availablePANTHERPTHR13102:SF0NUCLEOLAR PROTEIN 9coord: 15..191
NoneNo IPR availablePANTHERPTHR13102PROTEIN C14ORF21coord: 15..191
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 75..191

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0016674 ID=g.arboreum_cottongen_reftransV1_0016674; Name=g.arboreum_cottongen_reftransV1_0016674; organism=Gossypium arboreum; type=contig; length=617bp
AGAACGTGAGATCCATAGCAATTGCATATTAAATCAAGGGGATTGACAAC
AATAACCTTGCATATCATTTTCAGAGTATCTTCAATAATGGTGTAGGCTT
CTGTGTCCTGAACATGCCTGGCTAATGACTTAAAAGCTGTCTCAGCTACA
TGAGAACCAGACCTGTCCATTGCAATAGCAGGAAAGATATTTGCACAGCC
TCGAAGGAAACTGCATAGATTGTCCAAATTACAGCCGTCGAGTAGAGTCT
GAAGAGTATTGCTTATGATATAATCTGTTGCTAATTCAAATTCCTTCCCC
CTAGCTTCTTCAAGAGCATTACCACATATAACTGATCGCTCCTCCACATC
CACTCCTTGGCTTTCAAAAAGGTTTGCAATCTCCGAAAAGTACTTTGCTG
TTTCAGGCTCAACCTGTTTCCTGATAACCGGTGCTTGTGAGTCCGAATTC
TGGTGATGCTTGAAAGATTTCTTAAATTTCCCAGTCCCATCAGTCACCTG
GCTCGTTACATTCTTTTTATAACCATTATCATCAAAACCACTATTTCCTT
TCTTTGCTTTTTTCCCCATTTTCATTTGCTTCCAAAGCTTCGACTTACAG
TGAGAGGCTAATTTTCG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding