g.arboreum_cottongen_reftransV1_0014686, g.arboreum_cottongen_reftransV1_0014686 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0014686
Unique Nameg.arboreum_cottongen_reftransV1_0014686
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length300
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr2chromosomeg.arboreum_cottongen_reftransV1_0014686:1..300 .
Chr2:41386991..41387554 +
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Match: A0A0D2NIQ3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G057900 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.885e-14
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = -2 
Query:    3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXXXXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299
            DPDVWRPPSRDTSSRRPARAGQVGTRKSPQDGAWGRGNTRTGTTGRGAKAGGSSRTNTGARASTTGKKGTGSGKSTKGDSANGDAEDGKSKRSQYEGPD
Sbjct:  117 DPDVWRPPSRDTSSRRPARAGQVGTRKSPQDGAWGRGNTRTGTTGRGAKAGGSSRTNTGARASTTGKKGTGSGKSTKGDSANGDAEDGKSKRSQYEGPD 215
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Match: A0A0D2M775_GOSRA (Katanin p60 ATPase-containing subunit A1 OS=Gossypium raimondii GN=KATNA1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 8.908e-14
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = -2 
Query:    3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXXXXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299
            DPDVWRPPSRDTSSRRPARAGQVGTRKSPQDGAWGRGNTRTGTTGRGAKAGGSSRTNTGARASTTGKKGTGSGKSTKGDSANGDAEDGKSKRSQYEGPD
Sbjct:  117 DPDVWRPPSRDTSSRRPARAGQVGTRKSPQDGAWGRGNTRTGTTGRGAKAGGSSRTNTGARASTTGKKGTGSGKSTKGDSANGDAEDGKSKRSQYEGPD 215
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Match: M4M7Q8_GOSAR (Katanin p60 ATPase-containing subunit A1 OS=Gossypium arboreum GN=KATNA1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 8.908e-14
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = -2 
Query:    3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXXXXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299
            DPDVWRPPSRDTSSRRPARAGQVGTRKSPQDGAWGRGNTRTGTTGRGAKAGGSSRTNTGARASTTGKKGTGSGKSTKGDSANGDAEDGKSKRSQYEGPD
Sbjct:  117 DPDVWRPPSRDTSSRRPARAGQVGTRKSPQDGAWGRGNTRTGTTGRGAKAGGSSRTNTGARASTTGKKGTGSGKSTKGDSANGDAEDGKSKRSQYEGPD 215
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Match: A0A0B0NF60_GOSAR (Katanin p60 ATPase-containing subunit A1 OS=Gossypium arboreum GN=KATNA1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.352e-14
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = -2 
Query:    3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXXXXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299
            DPDVWRPPSRDTSSRRPARAGQVGTRKSPQDGAWGRGNTRTGTTGRGAKAGGSSRTNTGARASTTGKKGTGSGKSTKGDSANGDAEDGKSKRSQYEGPD
Sbjct:  117 DPDVWRPPSRDTSSRRPARAGQVGTRKSPQDGAWGRGNTRTGTTGRGAKAGGSSRTNTGARASTTGKKGTGSGKSTKGDSANGDAEDGKSKRSQYEGPD 215
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Match: A0A0B0PPN6_GOSAR (Katanin p60 ATPase-containing subunit A1 OS=Gossypium arboreum GN=KATNA1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.938e-11
Identity = 86/99 (86.87%), Postives = 88/99 (88.89%), Query Frame = -2 
Query:    3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXXXXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299
            DPDVWRPPSRDTS+RRPAR GQ G RKSPQDG  GRGNTRT  TGRGAKAG SSRTNTG R STTGKKGTGSGK +KGDSANGDAEDGKSKRSQYEGPD
Sbjct:  145 DPDVWRPPSRDTSTRRPARGGQAGMRKSPQDGISGRGNTRTAATGRGAKAGASSRTNTGVRGSTTGKKGTGSGKPSKGDSANGDAEDGKSKRSQYEGPD 243
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Match: Q7XJI9_GOSHI (Katanin p60 ATPase-containing subunit A1 OS=Gossypium hirsutum GN=KTN1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.227e-11
Identity = 85/99 (85.86%), Postives = 88/99 (88.89%), Query Frame = -2 
Query:    3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXXXXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299
            DPDVWRPPSRDTS+RRPAR GQ G RKSPQDG  GRG+TRT  TGRGAKAG SSRTNTG R STTGKKGTGSGK +KGDSANGDAEDGKSKRSQYEGPD
Sbjct:  117 DPDVWRPPSRDTSTRRPARGGQAGMRKSPQDGISGRGSTRTAATGRGAKAGASSRTNTGVRGSTTGKKGTGSGKPSKGDSANGDAEDGKSKRSQYEGPD 215
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Match: A0A0B0PVH1_GOSAR (Katanin p60 ATPase-containing subunit A1 OS=Gossypium arboreum GN=KATNA1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.729e-11
Identity = 86/99 (86.87%), Postives = 88/99 (88.89%), Query Frame = -2 
Query:    3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXXXXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299
            DPDVWRPPSRDTS+RRPAR GQ G RKSPQDG  GRGNTRT  TGRGAKAG SSRTNTG R STTGKKGTGSGK +KGDSANGDAEDGKSKRSQYEGPD
Sbjct:  117 DPDVWRPPSRDTSTRRPARGGQAGMRKSPQDGISGRGNTRTAATGRGAKAGASSRTNTGVRGSTTGKKGTGSGKPSKGDSANGDAEDGKSKRSQYEGPD 215
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Match: A0A0D2S019_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G100400 PE=4 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.890e-11
Identity = 86/99 (86.87%), Postives = 88/99 (88.89%), Query Frame = -2 
Query:    3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXXXXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299
            DPDVWRPPSRDTS+RRPAR GQ G RKSPQDG  GRGNTRT  TGRGAKAG SSRTNTG R STTGKKGTGSGKS+KGDSANGDAEDGK KRSQYEGPD
Sbjct:  117 DPDVWRPPSRDTSTRRPARGGQAGMRKSPQDGISGRGNTRTAATGRGAKAGASSRTNTGVRGSTTGKKGTGSGKSSKGDSANGDAEDGKLKRSQYEGPD 215
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Match: A0A061GHZ4_THECC (Katanin p60 ATPase-containing subunit A1 OS=Theobroma cacao GN=KATNA1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.798e-11
Identity = 90/100 (90.00%), Postives = 93/100 (93.00%), Query Frame = -2 
Query:    3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXX-XXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299
            DPDVWRPPSRDT+SRRPARAGQVG RKSPQDG   GRGNTRTGTTGRGAKAGGSSR+NTG RAS TGKKG GSGKS+KGDSANGDAEDGKSKRSQYEGPD
Sbjct:   62 DPDVWRPPSRDTTSRRPARAGQVGMRKSPQDGTWGGRGNTRTGTTGRGAKAGGSSRSNTGVRASATGKKGAGSGKSSKGDSANGDAEDGKSKRSQYEGPD 161
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Match: A0A061GB95_THECC (Katanin p60 ATPase-containing subunit A1 OS=Theobroma cacao GN=KATNA1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.078e-11
Identity = 90/100 (90.00%), Postives = 93/100 (93.00%), Query Frame = -2 
Query:    3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXX-XXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299
            DPDVWRPPSRDT+SRRPARAGQVG RKSPQDG   GRGNTRTGTTGRGAKAGGSSR+NTG RAS TGKKG GSGKS+KGDSANGDAEDGKSKRSQYEGPD
Sbjct:  168 DPDVWRPPSRDTTSRRPARAGQVGMRKSPQDGTWGGRGNTRTGTTGRGAKAGGSSRSNTGVRASATGKKGAGSGKSSKGDSANGDAEDGKSKRSQYEGPD 267
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy Swiss-Prot
Match: KTNA1_ARATH (Katanin p60 ATPase-containing subunit A1 OS=Arabidopsis thaliana GN=AAA1 PE=1 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 9.056e-7
Identity = 64/100 (64.00%), Postives = 73/100 (73.00%), Query Frame = -2 
Query:    3 DPDVWXXXXXXXXXXXXXRAGQVGTRKSPQDXX-XXXXXXXXXXXXXXXXXXGSSRTNTGARAXXXXXXXXXXXXXXXGDSANGDAEDGKSKRSQYEGPD 299
            DPDVWRPP+RD +SRRPARAGQ GTRKSPQDGA      TRTG   RG + G +S++  GAR+ST GKKG  S  +   +S NGDAEDGKSKR  YEGPD
Sbjct:  120 DPDVWRPPTRDVTSRRPARAGQTGTRKSPQDGAWARGPTTRTGPASRGGRGGATSKSTAGARSSTAGKKGAASKSNKA-ESMNGDAEDGKSKRGLYEGPD 218
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2NIQ3_GOSRA5.885e-14100.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2M775_GOSRA8.908e-14100.00Katanin p60 ATPase-containing subunit A1 OS=Gossyp... [more]
M4M7Q8_GOSAR8.908e-14100.00Katanin p60 ATPase-containing subunit A1 OS=Gossyp... [more]
A0A0B0NF60_GOSAR9.352e-14100.00Katanin p60 ATPase-containing subunit A1 OS=Gossyp... [more]
A0A0B0PPN6_GOSAR2.938e-1186.87Katanin p60 ATPase-containing subunit A1 OS=Gossyp... [more]
Q7XJI9_GOSHI3.227e-1185.86Katanin p60 ATPase-containing subunit A1 OS=Gossyp... [more]
A0A0B0PVH1_GOSAR3.729e-1186.87Katanin p60 ATPase-containing subunit A1 OS=Gossyp... [more]
A0A0D2S019_GOSRA4.890e-1186.87Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061GHZ4_THECC6.798e-1190.00Katanin p60 ATPase-containing subunit A1 OS=Theobr... [more]
A0A061GB95_THECC7.078e-1190.00Katanin p60 ATPase-containing subunit A1 OS=Theobr... [more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0014686 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
KTNA1_ARATH9.056e-764.00Katanin p60 ATPase-containing subunit A1 OS=Arabid... [more]
back to top
Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0014686 ID=g.arboreum_cottongen_reftransV1_0014686; Name=g.arboreum_cottongen_reftransV1_0014686; organism=Gossypium arboreum; type=contig; length=300bp
GGATCAGGTCCCTCATACTGGGACCTCTTAGATTTTCCATCTTCAGCATC
ACCATTTGCCGAATCTCCTTTTGTAGATTTCCCTGAGCCAGTACCCTTCT
TTCCAGTGGTAGATGCTCTGGCCCCTGTGTTAGTTCTACTTGAACCACCT
GCCTTTGCACCTCGTCCAGTTGTACCTGTTCTGGTATTGCCACGACCCCA
AGCCCCATCTTGTGGAGATTTCCTCGTGCCCACTTGACCAGCCCTAGCAG
GTCTTCTACTTGAAGTGTCCCGACTTGGAGGCCTCCACACATCAGGATCA
back to top