g.arboreum_cottongen_reftransV1_0021925, g.arboreum_cottongen_reftransV1_0021925 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0021925
Unique Nameg.arboreum_cottongen_reftransV1_0021925
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1803
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr9chromosomeg.arboreum_cottongen_reftransV1_0021925:1..1803 .
Chr9:60783245..60786729 +
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy TrEMBL
Match: A0A0D2UW24_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G201900 PE=4 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 3.495e-84
Identity = 183/187 (97.86%), Postives = 185/187 (98.93%), Query Frame = 1 
Query:  820 PSNQNMTLQQNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPVVECHWTEHTSPDGFKYYHNSLTRESKWEKPEELTLFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRHPHQLQQPIYPTAYPASGVRNQQSTQELGYGQLPVAPSPNDPSRFQQGLQMVQDLAWKNKP 1380
            PSNQNMTL+QNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPVVECHWTEHTSPDGFKYYHNS+TRESKWEKPEELTLFEQQQQQQQKPPVQQPQTQLHAAQQASQQAQLQTQLQTQIRHPHQLQ PIYPTAYPASGVRNQQSTQELGYGQLPVAPSPNDPSRFQQG QMVQDLAWKNKP
Sbjct:  570 PSNQNMTLRQNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPVVECHWTEHTSPDGFKYYHNSVTRESKWEKPEELTLFEQQQQQQQKPPVQQPQTQLHAAQQASQQAQLQTQLQTQIRHPHQLQHPIYPTAYPASGVRNQQSTQELGYGQLPVAPSPNDPSRFQQGPQMVQDLAWKNKP 756

HSP 2 Score: 240.736 bits (613), Expect = 5.387e-66
Identity = 153/172 (88.95%), Postives = 153/172 (88.95%), Query Frame = 1 
Query:   73 APNFGDAMGDRVPPTAWHPMSPQKMGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIPTVGHQISPLQKPLGSPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQLSASRPLVQPNVSSG 588
            APNFGDAMGDRVPPTAWHPMSPQ MGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPFGGPSDGSLPGLSVSSSSTSV               QISPLQ PL SPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQL ASRPLVQPNVSSG
Sbjct:  336 APNFGDAMGDRVPPTAWHPMSPQNMGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPFGGPSDGSLPGLSVSSSSTSV---------------QISPLQNPLESPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQLPASRPLVQPNVSSG 492
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy TrEMBL
Match: A0A0D2VPG6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G201900 PE=4 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 4.183e-84
Identity = 183/187 (97.86%), Postives = 185/187 (98.93%), Query Frame = 1 
Query:  820 PSNQNMTLQQNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPVVECHWTEHTSPDGFKYYHNSLTRESKWEKPEELTLFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRHPHQLQQPIYPTAYPASGVRNQQSTQELGYGQLPVAPSPNDPSRFQQGLQMVQDLAWKNKP 1380
            PSNQNMTL+QNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPVVECHWTEHTSPDGFKYYHNS+TRESKWEKPEELTLFEQQQQQQQKPPVQQPQTQLHAAQQASQQAQLQTQLQTQIRHPHQLQ PIYPTAYPASGVRNQQSTQELGYGQLPVAPSPNDPSRFQQG QMVQDLAWKNKP
Sbjct:  585 PSNQNMTLRQNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPVVECHWTEHTSPDGFKYYHNSVTRESKWEKPEELTLFEQQQQQQQKPPVQQPQTQLHAAQQASQQAQLQTQLQTQIRHPHQLQHPIYPTAYPASGVRNQQSTQELGYGQLPVAPSPNDPSRFQQGPQMVQDLAWKNKP 771

HSP 2 Score: 262.692 bits (670), Expect = 7.223e-74
Identity = 168/172 (97.67%), Postives = 168/172 (97.67%), Query Frame = 1 
Query:   73 APNFGDAMGDRVPPTAWHPMSPQKMGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIPTVGHQISPLQKPLGSPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQLSASRPLVQPNVSSG 588
            APNFGDAMGDRVPPTAWHPMSPQ MGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPFGGPSDGSLPGLSVSSSSTSVQGFNQSSSQIPTVGHQISPLQ PL SPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQL ASRPLVQPNVSSG
Sbjct:  336 APNFGDAMGDRVPPTAWHPMSPQNMGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPFGGPSDGSLPGLSVSSSSTSVQGFNQSSSQIPTVGHQISPLQNPLESPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQLPASRPLVQPNVSSG 507
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy TrEMBL
Match: A0A0D2UVN0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G201900 PE=4 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 5.212e-84
Identity = 183/187 (97.86%), Postives = 185/187 (98.93%), Query Frame = 1 
Query:  820 PSNQNMTLQQNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPVVECHWTEHTSPDGFKYYHNSLTRESKWEKPEELTLFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRHPHQLQQPIYPTAYPASGVRNQQSTQELGYGQLPVAPSPNDPSRFQQGLQMVQDLAWKNKP 1380
            PSNQNMTL+QNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPVVECHWTEHTSPDGFKYYHNS+TRESKWEKPEELTLFEQQQQQQQKPPVQQPQTQLHAAQQASQQAQLQTQLQTQIRHPHQLQ PIYPTAYPASGVRNQQSTQELGYGQLPVAPSPNDPSRFQQG QMVQDLAWKNKP
Sbjct:  593 PSNQNMTLRQNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPVVECHWTEHTSPDGFKYYHNSVTRESKWEKPEELTLFEQQQQQQQKPPVQQPQTQLHAAQQASQQAQLQTQLQTQIRHPHQLQHPIYPTAYPASGVRNQQSTQELGYGQLPVAPSPNDPSRFQQGPQMVQDLAWKNKP 779

HSP 2 Score: 262.692 bits (670), Expect = 7.778e-74
Identity = 168/172 (97.67%), Postives = 168/172 (97.67%), Query Frame = 1 
Query:   73 APNFGDAMGDRVPPTAWHPMSPQKMGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIPTVGHQISPLQKPLGSPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQLSASRPLVQPNVSSG 588
            APNFGDAMGDRVPPTAWHPMSPQ MGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPFGGPSDGSLPGLSVSSSSTSVQGFNQSSSQIPTVGHQISPLQ PL SPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQL ASRPLVQPNVSSG
Sbjct:  344 APNFGDAMGDRVPPTAWHPMSPQNMGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPFGGPSDGSLPGLSVSSSSTSVQGFNQSSSQIPTVGHQISPLQNPLESPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQLPASRPLVQPNVSSG 515
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy TrEMBL
Match: A0A0B0N4S8_GOSAR (Flowering time control FCA-like protein OS=Gossypium arboreum GN=F383_12520 PE=4 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 2.343e-81
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 1 
Query:  820 PSNQNMTLQQNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPVVECHWTEHTSPDGFKYYHNSLTRESKWEKPEELTLFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRHPHQLQQPIYPTAYPASGVRNQQSTQELGYGQLPVAPSPNDPSRFQQGLQM 1350
            PSNQNMTLQQNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPVVECHWTEHTSPDGFKYYHNSLTRESKWEKPEELTLFEQQQQQQQKPPVQQPQTQLHAAQQASQQAQLQTQLQTQIRHPHQLQQPIYPTAYPASGVRNQQSTQELGYGQLPVAPSPNDPSRFQQGLQM
Sbjct:  371 PSNQNMTLQQNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPVVECHWTEHTSPDGFKYYHNSLTRESKWEKPEELTLFEQQQQQQQKPPVQQPQTQLHAAQQASQQAQLQTQLQTQIRHPHQLQQPIYPTAYPASGVRNQQSTQELGYGQLPVAPSPNDPSRFQQGLQM 547

HSP 2 Score: 169.088 bits (427), Expect = 5.792e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1 
Query:  328 QIPTVGHQISPLQKPLGSPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQLSASRPLVQPNVSSG 588
            QIPTVGHQISPLQKPLGSPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQLSASRPLVQPNVSSG
Sbjct:  207 QIPTVGHQISPLQKPLGSPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQLSASRPLVQPNVSSG 293
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy TrEMBL
Match: A0A0D2RQ97_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G201900 PE=4 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 1.373e-74
Identity = 170/173 (98.27%), Postives = 172/173 (99.42%), Query Frame = 1 
Query:  820 PSNQNMTLQQNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPVVECHWTEHTSPDGFKYYHNSLTRESKWEKPEELTLFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRHPHQLQQPIYPTAYPASGVRNQQSTQELGYGQLPVAPSPNDPSRFQQ 1338
            PSNQNMTL+QNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPVVECHWTEHTSPDGFKYYHNS+TRESKWEKPEELTLFEQQQQQQQKPPVQQPQTQLHAAQQASQQAQLQTQLQTQIRHPHQLQ PIYPTAYPASGVRNQQSTQELGYGQLPVAPSPNDPSRFQQ
Sbjct:  585 PSNQNMTLRQNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPVVECHWTEHTSPDGFKYYHNSVTRESKWEKPEELTLFEQQQQQQQKPPVQQPQTQLHAAQQASQQAQLQTQLQTQIRHPHQLQHPIYPTAYPASGVRNQQSTQELGYGQLPVAPSPNDPSRFQQ 757

HSP 2 Score: 263.077 bits (671), Expect = 4.840e-74
Identity = 168/172 (97.67%), Postives = 168/172 (97.67%), Query Frame = 1 
Query:   73 APNFGDAMGDRVPPTAWHPMSPQKMGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIPTVGHQISPLQKPLGSPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQLSASRPLVQPNVSSG 588
            APNFGDAMGDRVPPTAWHPMSPQ MGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPFGGPSDGSLPGLSVSSSSTSVQGFNQSSSQIPTVGHQISPLQ PL SPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQL ASRPLVQPNVSSG
Sbjct:  336 APNFGDAMGDRVPPTAWHPMSPQNMGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPFGGPSDGSLPGLSVSSSSTSVQGFNQSSSQIPTVGHQISPLQNPLESPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQLPASRPLVQPNVSSG 507
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy TrEMBL
Match: A0A0D2TAV5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G201900 PE=4 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 3.293e-74
Identity = 168/172 (97.67%), Postives = 168/172 (97.67%), Query Frame = 1 
Query:   73 APNFGDAMGDRVPPTAWHPMSPQKMGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIPTVGHQISPLQKPLGSPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQLSASRPLVQPNVSSG 588
            APNFGDAMGDRVPPTAWHPMSPQ MGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPFGGPSDGSLPGLSVSSSSTSVQGFNQSSSQIPTVGHQISPLQ PL SPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQL ASRPLVQPNVSSG
Sbjct:  336 APNFGDAMGDRVPPTAWHPMSPQNMGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPFGGPSDGSLPGLSVSSSSTSVQGFNQSSSQIPTVGHQISPLQNPLESPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQLPASRPLVQPNVSSG 507

HSP 2 Score: 197.593 bits (501), Expect = 6.768e-51
Identity = 136/139 (97.84%), Postives = 138/139 (99.28%), Query Frame = 1 
Query:  820 PSNQNMTLQQNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPVVECHWTEHTSPDGFKYYHNSLTRESKWEKPEELTLFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRHPHQLQQPIYPTA 1236
            PSNQNMTL+QNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPVVECHWTEHTSPDGFKYYHNS+TRESKWEKPEELTLFEQQQQQQQKPPVQQPQTQLHAAQQASQQAQLQTQLQTQIRHPHQLQ PIYPTA
Sbjct:  585 PSNQNMTLRQNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPVVECHWTEHTSPDGFKYYHNSVTRESKWEKPEELTLFEQQQQQQQKPPVQQPQTQLHAAQQASQQAQLQTQLQTQIRHPHQLQHPIYPTA 723
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy TrEMBL
Match: A0A061EPK4_THECC (RNA binding,abscisic acid binding, putative isoform 1 OS=Theobroma cacao GN=TCM_021403 PE=4 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.897e-61
Identity = 151/196 (77.04%), Postives = 160/196 (81.63%), Query Frame = 1 
Query:  820 PSNQNMTLQQNSQASKHQWAGMMPQAVGSAPAKTPGTDV----PSSASAAMKPVV---ECHWTEHTSPDGFKYYHNSLTRESKWEKPEELTLFEXXXXXXXXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXXIRHPHQLQQPIYPTAYPASGVRNQQSTQELGYGQLPVAPSPNDPSRFQQGLQMVQDLAWKNKP 1380
            PSNQNMTLQQNSQASK QWAGM PQA GS PA TP TDV     + A+  M P V   ECHWTEHTSPDGFKYYHNSLTRES+WEKPEEL LFEQQQQQQQKPPVQQPQTQ H       +QQ Q QTQLQTQI HP QLQ P +P+AY ASGVRNQQ+TQELGYGQLPVAPSPN+P+RFQQGLQ VQDLAWKNKP
Sbjct:  587 PSNQNMTLQQNSQASKQQWAGMTPQAAGSTPASTPSTDVPSSASAPAAPVMTPTVTPGECHWTEHTSPDGFKYYHNSLTRESRWEKPEELALFEQQQQQQQKPPVQQPQTQSHPPQQASQAQQVQFQTQLQTQIHHPLQLQLPFFPSAYSASGVRNQQNTQELGYGQLPVAPSPNNPTRFQQGLQTVQDLAWKNKP 782

HSP 2 Score: 188.734 bits (478), Expect = 6.338e-48
Identity = 131/172 (76.16%), Postives = 143/172 (83.14%), Query Frame = 1 
Query:   73 APNFGDAMGDRVPPTAWHPMSPQKMGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIPTVGHQISPLQKPLGSPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVP-PASHTPFSQALPSQHLAGLSGQLSASRPLVQPNVSS 585
            APNFGDAMGD VPP  WHPMSPQ MGPT  PGIRS+G+QLLPRS +LAIPLNPG PFGGP+DGSLPG +VSSSSTS QGFNQ S  +PTVG QISPLQKPL SPQ LPPSFQLHP AP+SYSQ+Q  HVGQLQVP  A+ +PFSQALPSQH   +SGQL ASRP +Q N SS
Sbjct:  337 APNFGDAMGDNVPPNPWHPMSPQNMGPT--PGIRSLGSQLLPRSGELAIPLNPGGPFGGPTDGSLPGPAVSSSSTSQQGFNQPSPLVPTVGQQISPLQKPLQSPQGLPPSFQLHPLAPVSYSQSQAVHVGQLQVPLSATQSPFSQALPSQHF--VSGQLPASRPQIQQNASS 504
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy TrEMBL
Match: A0A061EQ46_THECC (RNA binding,abscisic acid binding, putative isoform 3 OS=Theobroma cacao GN=TCM_021403 PE=4 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.350e-59
Identity = 151/197 (76.65%), Postives = 160/197 (81.22%), Query Frame = 1 
Query:  820 PSNQNMTLQQNSQASKHQWAGMMPQAVGSAPAKTPGTDV----PSSASAAMKPVV---ECHWTEHTSPDGFKYYHNSLTRESKWEKPEELTLFEXXXXXXXXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXXIRHPHQLQQPIYPTAYPASGVRNQQSTQELGYGQLPVAPSPNDPSRF-QQGLQMVQDLAWKNKP 1380
            PSNQNMTLQQNSQASK QWAGM PQA GS PA TP TDV     + A+  M P V   ECHWTEHTSPDGFKYYHNSLTRES+WEKPEEL LFEQQQQQQQKPPVQQPQTQ H       +QQ Q QTQLQTQI HP QLQ P +P+AY ASGVRNQQ+TQELGYGQLPVAPSPN+P+RF QQGLQ VQDLAWKNKP
Sbjct:  587 PSNQNMTLQQNSQASKQQWAGMTPQAAGSTPASTPSTDVPSSASAPAAPVMTPTVTPGECHWTEHTSPDGFKYYHNSLTRESRWEKPEELALFEQQQQQQQKPPVQQPQTQSHPPQQASQAQQVQFQTQLQTQIHHPLQLQLPFFPSAYSASGVRNQQNTQELGYGQLPVAPSPNNPTRFQQQGLQTVQDLAWKNKP 783

HSP 2 Score: 188.734 bits (478), Expect = 6.726e-48
Identity = 131/172 (76.16%), Postives = 143/172 (83.14%), Query Frame = 1 
Query:   73 APNFGDAMGDRVPPTAWHPMSPQKMGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIPTVGHQISPLQKPLGSPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVP-PASHTPFSQALPSQHLAGLSGQLSASRPLVQPNVSS 585
            APNFGDAMGD VPP  WHPMSPQ MGPT  PGIRS+G+QLLPRS +LAIPLNPG PFGGP+DGSLPG +VSSSSTS QGFNQ S  +PTVG QISPLQKPL SPQ LPPSFQLHP AP+SYSQ+Q  HVGQLQVP  A+ +PFSQALPSQH   +SGQL ASRP +Q N SS
Sbjct:  337 APNFGDAMGDNVPPNPWHPMSPQNMGPT--PGIRSLGSQLLPRSGELAIPLNPGGPFGGPTDGSLPGPAVSSSSTSQQGFNQPSPLVPTVGQQISPLQKPLQSPQGLPPSFQLHPLAPVSYSQSQAVHVGQLQVPLSATQSPFSQALPSQHF--VSGQLPASRPQIQQNASS 504
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy TrEMBL
Match: A0A061EQY6_THECC (RNA binding,abscisic acid binding, putative isoform 2 OS=Theobroma cacao GN=TCM_021403 PE=4 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.871e-52
Identity = 139/183 (75.96%), Postives = 148/183 (80.87%), Query Frame = 1 
Query:  820 PSNQNMTLQQNSQASKHQWAGMMPQAVGSAPAKTPGTDV----PSSASAAMKPVV---ECHWTEHTSPDGFKYYHNSLTRESKWEKPEELTLFEXXXXXXXXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXXIRHPHQLQQPIYPTAYPASGVRNQQSTQELGYGQLPVAPSPNDPSRFQQG 1341
            PSNQNMTLQQNSQASK QWAGM PQA GS PA TP TDV     + A+  M P V   ECHWTEHTSPDGFKYYHNSLTRES+WEKPEEL LFEQQQQQQQKPPVQQPQTQ H       +QQ Q QTQLQTQI HP QLQ P +P+AY ASGVRNQQ+TQELGYGQLPVAPSPN+P+RFQQG
Sbjct:  585 PSNQNMTLQQNSQASKQQWAGMTPQAAGSTPASTPSTDVPSSASAPAAPVMTPTVTPGECHWTEHTSPDGFKYYHNSLTRESRWEKPEELALFEQQQQQQQKPPVQQPQTQSHPPQQASQAQQVQFQTQLQTQIHHPLQLQLPFFPSAYSASGVRNQQNTQELGYGQLPVAPSPNNPTRFQQG 767

HSP 2 Score: 189.119 bits (479), Expect = 6.012e-48
Identity = 131/172 (76.16%), Postives = 143/172 (83.14%), Query Frame = 1 
Query:   73 APNFGDAMGDRVPPTAWHPMSPQKMGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIPTVGHQISPLQKPLGSPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVP-PASHTPFSQALPSQHLAGLSGQLSASRPLVQPNVSS 585
            APNFGDAMGD VPP  WHPMSPQ MGPT  PGIRS+G+QLLPRS +LAIPLNPG PFGGP+DGSLPG +VSSSSTS QGFNQ S  +PTVG QISPLQKPL SPQ LPPSFQLHP AP+SYSQ+Q  HVGQLQVP  A+ +PFSQALPSQH   +SGQL ASRP +Q N SS
Sbjct:  335 APNFGDAMGDNVPPNPWHPMSPQNMGPT--PGIRSLGSQLLPRSGELAIPLNPGGPFGGPTDGSLPGPAVSSSSTSQQGFNQPSPLVPTVGQQISPLQKPLQSPQGLPPSFQLHPLAPVSYSQSQAVHVGQLQVPLSATQSPFSQALPSQHF--VSGQLPASRPQIQQNASS 502
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy TrEMBL
Match: A0A061EWZ0_THECC (RNA binding,abscisic acid binding, putative isoform 4 OS=Theobroma cacao GN=TCM_021403 PE=4 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 8.101e-48
Identity = 131/172 (76.16%), Postives = 143/172 (83.14%), Query Frame = 1 
Query:   73 APNFGDAMGDRVPPTAWHPMSPQKMGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIPTVGHQISPLQKPLGSPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVP-PASHTPFSQALPSQHLAGLSGQLSASRPLVQPNVSS 585
            APNFGDAMGD VPP  WHPMSPQ MGPT  PGIRS+G+QLLPRS +LAIPLNPG PFGGP+DGSLPG +VSSSSTS QGFNQ S  +PTVG QISPLQKPL SPQ LPPSFQLHP AP+SYSQ+Q  HVGQLQVP  A+ +PFSQALPSQH   +SGQL ASRP +Q N SS
Sbjct:  337 APNFGDAMGDNVPPNPWHPMSPQNMGPT--PGIRSLGSQLLPRSGELAIPLNPGGPFGGPTDGSLPGPAVSSSSTSQQGFNQPSPLVPTVGQQISPLQKPLQSPQGLPPSFQLHPLAPVSYSQSQAVHVGQLQVPLSATQSPFSQALPSQHF--VSGQLPASRPQIQQNASS 504

HSP 2 Score: 187.963 bits (476), Expect = 1.130e-47
Identity = 137/196 (69.90%), Postives = 145/196 (73.98%), Query Frame = 1 
Query:  820 PSNQNMTLQQNSQASKHQWAGMMPQAVGSAPAKTPGTDV----PSSASAAMKPVV---ECHWTEHTSPDGFKYYHNSLTRESKWEKPEELTLFEXXXXXXXXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXXIRHPHQLQQPIYPTAYPASGVRNQQSTQELGYGQLPVAPSPNDPSRFQQGLQMVQDLAWKNKP 1380
            PSNQNMTLQQNSQASK QWAGM PQA GS PA TP TDV     + A+  M P V   ECHWTEHTSPDGFKYYHNSLTRES+   PEEL LFEQQQQQQQKPPVQQPQTQ H       +QQ Q QTQLQTQI HP QLQ P +P+A             ELGYGQLPVAPSPN+P+RFQQGLQ VQDLAWKNKP
Sbjct:  587 PSNQNMTLQQNSQASKQQWAGMTPQAAGSTPASTPSTDVPSSASAPAAPVMTPTVTPGECHWTEHTSPDGFKYYHNSLTRESRVRHPEELALFEQQQQQQQKPPVQQPQTQSHPPQQASQAQQVQFQTQLQTQIHHPLQLQLPFFPSA-------------ELGYGQLPVAPSPNNPTRFQQGLQTVQDLAWKNKP 769
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BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy Swiss-Prot
Match: FCA_ARATH (Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.040e-20
Identity = 49/87 (56.32%), Postives = 59/87 (67.82%), Query Frame = 1 
Query:  826 NQNMTLQQNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPV--VECHWTEHTSPDGFKYYHNSLTRESKWEKPEELTLFE 1080
            NQN+ L QN +A K QWAG     V S    TP + V ++A A  + V  V+C WTEHTSPDGFKYY+N LT ESKWEKPEE+ +FE
Sbjct:  543 NQNLPLSQNGRAGKQQWAGSAIPRVASTTGSTPVSYVQTAAPAVSQSVGSVKCTWTEHTSPDGFKYYYNGLTGESKWEKPEEMIVFE 629
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2UW24_GOSRA3.495e-8497.86Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2VPG6_GOSRA4.183e-8497.86Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2UVN0_GOSRA5.212e-8497.86Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B0N4S8_GOSAR2.343e-81100.00Flowering time control FCA-like protein OS=Gossypi... [more]
A0A0D2RQ97_GOSRA1.373e-7498.27Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2TAV5_GOSRA3.293e-7497.67Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061EPK4_THECC2.897e-6177.04RNA binding,abscisic acid binding, putative isofor... [more]
A0A061EQ46_THECC1.350e-5976.65RNA binding,abscisic acid binding, putative isofor... [more]
A0A061EQY6_THECC1.871e-5275.96RNA binding,abscisic acid binding, putative isofor... [more]
A0A061EWZ0_THECC8.101e-4876.16RNA binding,abscisic acid binding, putative isofor... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FCA_ARATH1.040e-2056.32Flowering time control protein FCA OS=Arabidopsis ... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001202WW domainSMARTSM00456ww_5coord: 292..324
e-value: 7.1E-9
score: 45.5
IPR001202WW domainPFAMPF00397WWcoord: 296..322
e-value: 3.9E-9
score: 36.2
IPR001202WW domainPROSITEPS50020WW_DOMAIN_2coord: 291..324
score: 12.236
IPR001202WW domainSUPERFAMILY51045WW domaincoord: 296..329
NoneNo IPR availableGENE3D2.20.70.10coord: 295..325
e-value: 6.6E-15
score: 53.7

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0021925 ID=g.arboreum_cottongen_reftransV1_0021925; Name=g.arboreum_cottongen_reftransV1_0021925; organism=Gossypium arboreum; type=contig; length=1803bp
TCAAGGGGTGGTGCTGCTGCATTTGGAGGTCCAGGTTTTGGTCCTCGTTT
CCAAACACCAAGGCCTAGACCAGCACCCAACTTTGGTGATGCAATGGGGG
ATCGTGTTCCACCTACTGCTTGGCACCCTATGAGTCCACAGAAAATGGGA
CCAACTTCTAATCCTGGCATTCGGAGTATGGGGAACCAGTTGCTACCTAG
GTCTGCTGACCTAGCAATACCTTTAAATCCAGGTGCTCCTTTTGGTGGCC
CTTCAGATGGTTCTCTTCCTGGCCTTTCAGTTTCATCTTCATCTACTTCA
GTACAGGGATTTAATCAATCTTCATCACAAATTCCAACTGTTGGTCATCA
GATTTCACCTTTACAGAAGCCCCTTGGTTCACCACAGAATCTACCGCCTT
CCTTTCAACTACACCCGCAAGCACCTATGTCATACTCGCAGACACAAACT
TCACATGTTGGTCAACTTCAAGTTCCTCCTGCTAGTCATACTCCCTTCAG
TCAAGCTCTTCCCTCACAACATTTAGCTGGTTTGAGTGGCCAGTTGTCTG
CGTCTCGGCCACTGGTTCAGCCGAATGTTTCATCTGGTGCAGCACTACAA
AACCCTTTGAATGTCAACTTACCGCCCAATTCTGCGGCCAGTGCTGCAAA
TCAACAACAGTTACCTGCTCCTAACCAGCAGCAGCCGCTGCAACCACTTC
AGCAATCCCCTTCTCAGCTAGCGCAGATGCTGTCTCAACAAACACAAACT
CTGCAAGCAAGCTTCCAATCATCTCAGCAGGCATTTTCTCAGCTGCAGCA
ACAATTGCAGCTGATGCAACCTTCAAATCAAAATATGACATTGCAGCAGA
ATTCTCAGGCTTCTAAACATCAGTGGGCTGGTATGATGCCGCAGGCTGTT
GGCAGCGCTCCTGCCAAAACACCTGGTACAGATGTTCCTTCATCTGCATC
TGCTGCTATGAAACCGGTAGTAGAATGTCATTGGACAGAGCATACTTCAC
CTGACGGGTTCAAATACTATCATAACAGTCTAACACGTGAAAGCAAGTGG
GAGAAGCCCGAAGAATTAACTTTGTTTGAACAACAGCAGCAGCAACAACA
AAAGCCACCTGTTCAACAACCTCAAACTCAGTTACATGCTGCTCAGCAAG
CTTCACAACAGGCACAGCTGCAAACCCAGCTTCAGACACAGATTCGCCAT
CCTCACCAGTTACAGCAGCCTATCTATCCCACAGCGTATCCAGCTTCTGG
AGTTAGAAATCAACAAAGTACACAGGAACTTGGTTACGGACAATTACCAG
TGGCACCATCACCCAATGATCCATCACGATTCCAACAGGGGCTTCAGATG
GTACAGGATTTAGCATGGAAGAATAAGCCATAAGGGACTTGAAATTGGAA
GCTGAGGAGAGTCTCCTAGGGGGAATCGTGTTTCTTTTAGAAGAATGCCG
GGCGATCATAAAAACACAAATAGTCATGGCAAATGGCAATGGCATGGATG
CAGCAGCAACCCATTTTAAGCTAAAATGCCTGGCAGATGAGATGTGTAAT
AATAGAAGCTACAATATATGTAATAGTAAATCTTCTCAGAATTTAGTGTG
GTAAAAAGCCTTTGCTTGGTTACAGGCATTTTATGCTTTTGCCATTAAAT
ATTAGGGCAATGAAAGCCATCTGTATTTGTGTAACATAATATAAGTTCCT
ATAATAACCCGATACTTAGAAAAAAGAACTCTCGTTTTTGCTCTGAAATG
TCGACATACATCACCCTCCCAAGTTAGATTCTGGTCATTAGTTCTTTATT
TTG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR001202WW_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding