g.arboreum_cottongen_reftransV1_0008529, g.arboreum_cottongen_reftransV1_0008529 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0008529
Unique Nameg.arboreum_cottongen_reftransV1_0008529
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1357
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr4chromosomeg.arboreum_cottongen_reftransV1_0008529:1..1357 .
Chr4:8021606..8024025 +
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008529 vs. ExPASy TrEMBL
Match: A0A0B0MHP2_GOSAR (Tenomodulin OS=Gossypium arboreum GN=F383_02739 PE=4 SV=1)

HSP 1 Score: 774.237 bits (1998), Expect = 0.000e+0
Identity = 392/392 (100.00%), Postives = 392/392 (100.00%), Query Frame = 2 
Query:    2 EKLAFFQGLXXXXXXXXXXLSHLHEWLHSNIENLDYGADGISLHDPPEKIIPRWKGPPLEKSPEFLSNFQEQRKALFTGKVGMTYPAKRDGQSFLQKPTESPINEDLAISSSESDLTRKVHDTDTKDPKIVIESSDGSVKPGKKSGKEYWQHTKKWSRGFLECYNAETDPEVKSIMKDMGKDLDRWITEKEVQEAADLMKKLPERXXXXXXXXXXXXXREMELFGPQAVVSKYQEYAEEKEEDYLWWLDLPHVLCIELYTFENEGQRIGFYALEMAADLELEPKPHHVIAFEDTGDCKSFCYIMQAHLDMLGNGRAFIVPQPPKDAFREAKANGFGVTVIKKGELQLNVDQTLEEVEEQICEIGSKMYHDKIMRERSVDISSLMKGMLGVGD 1177
            EKLAFFQGLEKKVENENEKLSHLHEWLHSNIENLDYGADGISLHDPPEKIIPRWKGPPLEKSPEFLSNFQEQRKALFTGKVGMTYPAKRDGQSFLQKPTESPINEDLAISSSESDLTRKVHDTDTKDPKIVIESSDGSVKPGKKSGKEYWQHTKKWSRGFLECYNAETDPEVKSIMKDMGKDLDRWITEKEVQEAADLMKKLPERNKKFMEKKLNKLKREMELFGPQAVVSKYQEYAEEKEEDYLWWLDLPHVLCIELYTFENEGQRIGFYALEMAADLELEPKPHHVIAFEDTGDCKSFCYIMQAHLDMLGNGRAFIVPQPPKDAFREAKANGFGVTVIKKGELQLNVDQTLEEVEEQICEIGSKMYHDKIMRERSVDISSLMKGMLGVGD
Sbjct:  737 EKLAFFQGLEKKVENENEKLSHLHEWLHSNIENLDYGADGISLHDPPEKIIPRWKGPPLEKSPEFLSNFQEQRKALFTGKVGMTYPAKRDGQSFLQKPTESPINEDLAISSSESDLTRKVHDTDTKDPKIVIESSDGSVKPGKKSGKEYWQHTKKWSRGFLECYNAETDPEVKSIMKDMGKDLDRWITEKEVQEAADLMKKLPERNKKFMEKKLNKLKREMELFGPQAVVSKYQEYAEEKEEDYLWWLDLPHVLCIELYTFENEGQRIGFYALEMAADLELEPKPHHVIAFEDTGDCKSFCYIMQAHLDMLGNGRAFIVPQPPKDAFREAKANGFGVTVIKKGELQLNVDQTLEEVEEQICEIGSKMYHDKIMRERSVDISSLMKGMLGVGD 1128
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008529 vs. ExPASy TrEMBL
Match: A0A0D2QQM4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G108400 PE=4 SV=1)

HSP 1 Score: 763.837 bits (1971), Expect = 0.000e+0
Identity = 388/392 (98.98%), Postives = 388/392 (98.98%), Query Frame = 2 
Query:    2 EKLAFFQGLXXXXXXXXXXLSHLHEWLHSNIENLDYGADGISLHDPPEKIIPRWKGPPLEKSPEFLSNFQEQRKALFTGKVGMTYPAKRDGQSFLQKPTESPINEDLAISSSESDLTRKVHDTDTKDPKIVIESSDGSVKPGKKSGKEYWQHTKKWSRGFLECYNAETDPEVKSIMKDMGKDLDRWITEKEVQEAADLMKKLPERXXXXXXXXXXXXXREMELFGPQAVVSKYQEYAEEKEEDYLWWLDLPHVLCIELYTFENEGQRIGFYALEMAADLELEPKPHHVIAFEDTGDCKSFCYIMQAHLDMLGNGRAFIVPQPPKDAFREAKANGFGVTVIKKGELQLNVDQTLEEVEEQICEIGSKMYHDKIMRERSVDISSLMKGMLGVGD 1177
            EKLAFFQGLEKKVE ENEKLSHLHEWLHSNIENLDYG DGISLHDPPEKIIPRWKGPPLEKSPEFLSNFQEQRKALFTGKVGMTYPAKRDGQSFLQKPTESPINEDLAISSSESDLTRKVHDTD KDPKIVIESSDGSVKPGKKSGKEYWQHTKKWSRGFLECYNAETDPEVKSIMKDMGKDLDRWITEKEVQEAADLMKKLPERNKKFMEKKLNKLKREMELFGPQAVVSKYQEYAEEKEEDYLWWLDLPHVLCIELYTFENEGQRIGFYALEMAADLELEPKPHHVIAFEDTGDCKSFCYIMQAHLDMLGNGRAFIVPQPPK AFREAKANGFGVTVIKKGELQLNVDQTLEEVEEQICEIGSKMYHDKIMRERSVDISSLMKGMLGVGD
Sbjct:  738 EKLAFFQGLEKKVEKENEKLSHLHEWLHSNIENLDYGTDGISLHDPPEKIIPRWKGPPLEKSPEFLSNFQEQRKALFTGKVGMTYPAKRDGQSFLQKPTESPINEDLAISSSESDLTRKVHDTDKKDPKIVIESSDGSVKPGKKSGKEYWQHTKKWSRGFLECYNAETDPEVKSIMKDMGKDLDRWITEKEVQEAADLMKKLPERNKKFMEKKLNKLKREMELFGPQAVVSKYQEYAEEKEEDYLWWLDLPHVLCIELYTFENEGQRIGFYALEMAADLELEPKPHHVIAFEDTGDCKSFCYIMQAHLDMLGNGRAFIVPQPPKYAFREAKANGFGVTVIKKGELQLNVDQTLEEVEEQICEIGSKMYHDKIMRERSVDISSLMKGMLGVGD 1129
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008529 vs. ExPASy TrEMBL
Match: A0A061DSG2_THECC (Embryo defective 1703, putative isoform 2 OS=Theobroma cacao GN=TCM_005143 PE=4 SV=1)

HSP 1 Score: 679.093 bits (1751), Expect = 0.000e+0
Identity = 345/391 (88.24%), Postives = 366/391 (93.61%), Query Frame = 2 
Query:    2 EKLAFFQGLXXXXXXXXXXLSHLHEWLHSNIENLDYGADGISLHDPPEKIIPRWKGPPLEKSPEFLSNFQEQRKALFTGKVGMTYPAKRDGQSFLQKPTESPINEDLAISSSESDLTRKVHDTDTKDPKIVIESSDGSVKPGKKSGKEYWQHTKKWSRGFLECYNAETDPEVKSIMKDMGKDLDRWITEKEVQEAADLMKKLPERXXXXXXXXXXXXXREMELFGPQAVVSKYQEYAEEKEEDYLWWLDLPHVLCIELYTFENEGQRIGFYALEMAADLELEPKPHHVIAFEDTGDCKSFCYIMQAHLDMLGNGRAFIVPQPPKDAFREAKANGFGVTVIKKGELQLNVDQTLEEVEEQICEIGSKMYHDKIMRERSVDISSLMKGMLGVG 1174
            EKLAFFQGLEKKVE EN+KLSHLHEWLHSNIENLDYGADGISL+DPPEKI+PRWKGPPLEKSPE L+NFQEQRKALFTGK G+ YPAK+D Q F+Q+  E  INE L ISSSE DL RK+ D D KD KIV+E SDGSVKPGKKSGKEYWQHTKKWSRGFLE YNAET+PEVKSIMKDMGKDLDRWITEKE+QEAADLM KLPERNKKFMEKKLNKLKREMELFGPQAVVSKY+EYAE+KEEDYLWWLDL HVLCIELYTF+NE QRIGFYALEMAADLELEPKPHHVIAFEDTGDCK+FCYI+Q H+DMLGNGRAFIVPQPPKDAFREAKANGFGVTVI+KGELQLNVDQTLEEVEEQICEIGSK+YHDKIMRERSVDISSLMKG+LGV 
Sbjct:  746 EKLAFFQGLEKKVEKENKKLSHLHEWLHSNIENLDYGADGISLYDPPEKIVPRWKGPPLEKSPELLNNFQEQRKALFTGKTGIAYPAKKDEQGFIQRFVEPHINEKLTISSSELDLKRKLQDGDPKDSKIVVEGSDGSVKPGKKSGKEYWQHTKKWSRGFLESYNAETNPEVKSIMKDMGKDLDRWITEKEIQEAADLMTKLPERNKKFMEKKLNKLKREMELFGPQAVVSKYREYAEDKEEDYLWWLDLRHVLCIELYTFDNEEQRIGFYALEMAADLELEPKPHHVIAFEDTGDCKNFCYIIQDHMDMLGNGRAFIVPQPPKDAFREAKANGFGVTVIRKGELQLNVDQTLEEVEEQICEIGSKIYHDKIMRERSVDISSLMKGVLGVS 1136
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008529 vs. ExPASy TrEMBL
Match: A0A061DSN4_THECC (Embryo defective 1703, putative isoform 1 OS=Theobroma cacao GN=TCM_005143 PE=4 SV=1)

HSP 1 Score: 679.093 bits (1751), Expect = 0.000e+0
Identity = 345/391 (88.24%), Postives = 366/391 (93.61%), Query Frame = 2 
Query:    2 EKLAFFQGLXXXXXXXXXXLSHLHEWLHSNIENLDYGADGISLHDPPEKIIPRWKGPPLEKSPEFLSNFQEQRKALFTGKVGMTYPAKRDGQSFLQKPTESPINEDLAISSSESDLTRKVHDTDTKDPKIVIESSDGSVKPGKKSGKEYWQHTKKWSRGFLECYNAETDPEVKSIMKDMGKDLDRWITEKEVQEAADLMKKLPERXXXXXXXXXXXXXREMELFGPQAVVSKYQEYAEEKEEDYLWWLDLPHVLCIELYTFENEGQRIGFYALEMAADLELEPKPHHVIAFEDTGDCKSFCYIMQAHLDMLGNGRAFIVPQPPKDAFREAKANGFGVTVIKKGELQLNVDQTLEEVEEQICEIGSKMYHDKIMRERSVDISSLMKGMLGVG 1174
            EKLAFFQGLEKKVE EN+KLSHLHEWLHSNIENLDYGADGISL+DPPEKI+PRWKGPPLEKSPE L+NFQEQRKALFTGK G+ YPAK+D Q F+Q+  E  INE L ISSSE DL RK+ D D KD KIV+E SDGSVKPGKKSGKEYWQHTKKWSRGFLE YNAET+PEVKSIMKDMGKDLDRWITEKE+QEAADLM KLPERNKKFMEKKLNKLKREMELFGPQAVVSKY+EYAE+KEEDYLWWLDL HVLCIELYTF+NE QRIGFYALEMAADLELEPKPHHVIAFEDTGDCK+FCYI+Q H+DMLGNGRAFIVPQPPKDAFREAKANGFGVTVI+KGELQLNVDQTLEEVEEQICEIGSK+YHDKIMRERSVDISSLMKG+LGV 
Sbjct:  746 EKLAFFQGLEKKVEKENKKLSHLHEWLHSNIENLDYGADGISLYDPPEKIVPRWKGPPLEKSPELLNNFQEQRKALFTGKTGIAYPAKKDEQGFIQRFVEPHINEKLTISSSELDLKRKLQDGDPKDSKIVVEGSDGSVKPGKKSGKEYWQHTKKWSRGFLESYNAETNPEVKSIMKDMGKDLDRWITEKEIQEAADLMTKLPERNKKFMEKKLNKLKREMELFGPQAVVSKYREYAEDKEEDYLWWLDLRHVLCIELYTFDNEEQRIGFYALEMAADLELEPKPHHVIAFEDTGDCKNFCYIIQDHMDMLGNGRAFIVPQPPKDAFREAKANGFGVTVIRKGELQLNVDQTLEEVEEQICEIGSKIYHDKIMRERSVDISSLMKGVLGVS 1136
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008529 vs. ExPASy TrEMBL
Match: A0A0D2P730_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G108400 PE=4 SV=1)

HSP 1 Score: 630.172 bits (1624), Expect = 0.000e+0
Identity = 321/324 (99.07%), Postives = 321/324 (99.07%), Query Frame = 2 
Query:    2 EKLAFFQGLXXXXXXXXXXLSHLHEWLHSNIENLDYGADGISLHDPPEKIIPRWKGPPLEKSPEFLSNFQEQRKALFTGKVGMTYPAKRDGQSFLQKPTESPINEDLAISSSESDLTRKVHDTDTKDPKIVIESSDGSVKPGKKSGKEYWQHTKKWSRGFLECYNAETDPEVKSIMKDMGKDLDRWITEKEVQEAADLMKKLPERXXXXXXXXXXXXXREMELFGPQAVVSKYQEYAEEKEEDYLWWLDLPHVLCIELYTFENEGQRIGFYALEMAADLELEPKPHHVIAFEDTGDCKSFCYIMQAHLDMLGNGRAFIVPQPPK 973
            EKLAFFQGLEKKVE ENEKLSHLHEWLHSNIENLDYG DGISLHDPPEKIIPRWKGPPLEKSPEFLSNFQEQRKALFTGKVGMTYPAKRDGQSFLQKPTESPINEDLAISSSESDLTRKVHDTD KDPKIVIESSDGSVKPGKKSGKEYWQHTKKWSRGFLECYNAETDPEVKSIMKDMGKDLDRWITEKEVQEAADLMKKLPERNKKFMEKKLNKLKREMELFGPQAVVSKYQEYAEEKEEDYLWWLDLPHVLCIELYTFENEGQRIGFYALEMAADLELEPKPHHVIAFEDTGDCKSFCYIMQAHLDMLGNGRAFIVPQPPK
Sbjct:  738 EKLAFFQGLEKKVEKENEKLSHLHEWLHSNIENLDYGTDGISLHDPPEKIIPRWKGPPLEKSPEFLSNFQEQRKALFTGKVGMTYPAKRDGQSFLQKPTESPINEDLAISSSESDLTRKVHDTDKKDPKIVIESSDGSVKPGKKSGKEYWQHTKKWSRGFLECYNAETDPEVKSIMKDMGKDLDRWITEKEVQEAADLMKKLPERNKKFMEKKLNKLKREMELFGPQAVVSKYQEYAEEKEEDYLWWLDLPHVLCIELYTFENEGQRIGFYALEMAADLELEPKPHHVIAFEDTGDCKSFCYIMQAHLDMLGNGRAFIVPQPPK 1061
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008529 vs. ExPASy TrEMBL
Match: A0A067K9J0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14255 PE=4 SV=1)

HSP 1 Score: 584.334 bits (1505), Expect = 0.000e+0
Identity = 293/391 (74.94%), Postives = 339/391 (86.70%), Query Frame = 2 
Query:    2 EKLAFFQGLXXXXXXXXXXLSHLHEWLHSNIENLDYGADGISLHDPPEKIIPRWKGPPLEKSPEFLSNFQEQRKALFTGKVGMTYPAKRDGQSFLQKPTESPINEDLAISSSESDLTRKVHDTDTKDPKIVIESSDGSVKPGKKSGKEYWQHTKKWSRGFLECYNAETDPEVKSIMKDMGKDLDRWITEKEVQEAADLMKKLPERXXXXXXXXXXXXXREMELFGPQAVVSKYQEYAEEKEEDYLWWLDLPHVLCIELYTFENEGQRIGFYALEMAADLELEPKPHHVIAFEDTGDCKSFCYIMQAHLDMLGNGRAFIVPQPPKDAFREAKANGFGVTVIKKGELQLNVDQTLEEVEEQICEIGSKMYHDKIMRERSVDISSLMKGMLGVG 1174
            +K  F +GLEKKVE ENEKLS +HE+LHSNIENLDYGADGISL+DPPEK IPRWKGP LEK+PEFL+ F EQR A+F G    +   K+D Q+  QK TES +N++ A SSS++   + + + D   PK +IE SDGS++ G K+GKEYWQHTKKWSRGFLE YN+ETDP++KS MKD+GKDLDRWITE+E+QEAADLMKKLPERNKKF+EKK+NK+KREMELFGPQAVVSKY+EYAEEKEEDYLWWLDLPHVLCIELYT +N  Q+IGFY+LEMAADLELEPKP HVIAFED GDCK+ C I+QAH+DMLGNG AF+VP+PPKDAFREAKANGFGVTVI+K ELQLNVDQTLEEVEEQI EIGSKMYHDK+M+ERSVDIS+LMKG+ GV 
Sbjct:  744 DKTKFLKGLEKKVEKENEKLSRVHEYLHSNIENLDYGADGISLYDPPEKFIPRWKGPSLEKNPEFLNQFLEQRNAIFDGNASNSSLGKKDEQNLTQKSTESSVNDNAATSSSDNASEKNLRNKDPNVPKTIIEGSDGSIRAGTKTGKEYWQHTKKWSRGFLESYNSETDPDMKSTMKDIGKDLDRWITEEEIQEAADLMKKLPERNKKFVEKKINKIKREMELFGPQAVVSKYREYAEEKEEDYLWWLDLPHVLCIELYTTQNGEQKIGFYSLEMAADLELEPKPCHVIAFEDAGDCKNLCCIIQAHMDMLGNGHAFVVPRPPKDAFREAKANGFGVTVIRKKELQLNVDQTLEEVEEQIAEIGSKMYHDKLMQERSVDISALMKGVFGVN 1134
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008529 vs. ExPASy TrEMBL
Match: M5X5A5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021416mg PE=4 SV=1)

HSP 1 Score: 582.408 bits (1500), Expect = 0.000e+0
Identity = 299/389 (76.86%), Postives = 342/389 (87.92%), Query Frame = 2 
Query:    2 EKLAFFQGLXXXXXXXXXXLSHLHEWLHSNIENLDYGADGISLHDPPEKIIPRWKGPPLEKSPEFLSNFQEQRKALFTGKVGMTYPAKRDGQSFLQKPTESPINEDLAISSSESDLTRKVHDTDTKDPKIVIESSDGSVKPGKKSGKEYWQHTKKWSRGFLECYNAETDPEVKSIMKDMGKDLDRWITEKEVQEAADLMKKLPERXXXXXXXXXXXXXREMELFGPQAVVSKYQEYAEEKEEDYLWWLDLPHVLCIELYTFENEGQRIGFYALEMAADLELEPKPHHVIAFEDTGDCKSFCYIMQAHLDMLGNGRAFIVPQPPKDAFREAKANGFGVTVIKKGELQLNVDQTLEEVEEQICEIGSKMYHDKIMRERSVDISSLMKGMLG 1168
            +K AFF+GLEKKVE EN+KLS LHEWLHSNIENLDYGA+GISL+DPPEKIIPRWKGPPLEKSPEFL+ FQEQR  +F G  G++   K+D Q+ LQK TES   E++A SS  SD  +K    D ++ KIVIE SDGSV+ GKKSGKE+WQHTKKWS+GFLE YNAETDPE+K+ M+DMGK LDRWITEKE+QEAADLM K+PE+NKKFMEKKL+KLKREMELFGPQAVVSKY+EYAE+K+EDYLWWLDLP+VLCIELYT +NE QRIGFY+LEMAADLELEPKP+HVIAFEDT DCK+  YI+QA +DM GNG AF+V QPPKD FREAKANGFGVTVI+KGE+QLNVDQTLEEVEEQI EIGSK+YHDKIM+ERS+DISSLMKG+ G
Sbjct:  767 DKDAFFKGLEKKVEKENKKLSKLHEWLHSNIENLDYGAEGISLYDPPEKIIPRWKGPPLEKSPEFLNYFQEQRNTIFAGNDGIS--VKKDEQNILQKSTESQSQENIATSSVVSDPNKK----DNRNSKIVIEGSDGSVRAGKKSGKEFWQHTKKWSQGFLESYNAETDPEIKATMRDMGKGLDRWITEKEIQEAADLMNKMPEKNKKFMEKKLSKLKREMELFGPQAVVSKYREYAEDKKEDYLWWLDLPYVLCIELYTVDNEEQRIGFYSLEMAADLELEPKPYHVIAFEDTNDCKNLGYIIQAQMDMFGNGHAFVVAQPPKDVFREAKANGFGVTVIRKGEVQLNVDQTLEEVEEQITEIGSKIYHDKIMQERSMDISSLMKGVFG 1149
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008529 vs. ExPASy TrEMBL
Match: A0A067HES7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001135mg PE=4 SV=1)

HSP 1 Score: 575.859 bits (1483), Expect = 0.000e+0
Identity = 300/393 (76.34%), Postives = 340/393 (86.51%), Query Frame = 2 
Query:    2 EKLAFFQGLXXXXXXXXXXLSHLHEWLHSNIENLDYGADGISLHDPPEKIIPRWKGPPLEKSPEFLSNFQEQRKALFTGKVGMTYPAKRDGQSFLQKPTESPINEDLAISSSESDLTRK--VHDTDTKDPKIVIESSDGSVKPGKKSGKEYWQHTKKWSRGFLECYNAETDPEVKSIMKDMGKDLDRWITEKEVQEAADLMKKLPERXXXXXXXXXXXXXREMELFGPQAVVSKYQEYAEEKEEDYLWWLDLPHVLCIELYTFENEGQRIGFYALEMAADLELEPKPHHVIAFEDTGDCKSFCYIMQAHLDMLGNGRAFIVPQPPKDAFREAKANGFGVTVIKKGELQLNVDQTLEEVEEQICEIGSKMYHDKIMRERSVDISSLMKGMLGVG 1174
            +KLAFF+GLEKKVE ENEKL  LHE+LHSNIENLDYGADGIS++DPPEKIIPRWKGPPLEK+PEFL +F +QRKALF G  G +YP K+D ++FLQ PTESP  E  A S     L RK  + D D    K VI+ SDGSVKPGKK GKE+WQ+TKKWSRGFLE YNAETDPEVKS+MKD+GKDLDRWITE+E+QE+ADLM  L ERNK+FMEKK+NKLKREMELFGPQAVVSKY+EYAEE+EEDYLWWLDLPHVLCIELYT +   QR+GFY+LEMA DLELEPKPHHVIAFED  DCK+ CYI+QAHL+MLG G+AF+VP+PPKDAFREAKA+GF VTVI++ ELQLNVDQTLEEVEEQI EIGSK+YHD IM ERSVDISS+MKG+LG G
Sbjct:  738 DKLAFFKGLEKKVEKENEKLLQLHEYLHSNIENLDYGADGISIYDPPEKIIPRWKGPPLEKNPEFLDDFLKQRKALFVGNTGSSYPVKKDEENFLQNPTESPTLEKDATS-----LARKKEIQDNDPNHSKTVIDGSDGSVKPGKKYGKEFWQYTKKWSRGFLESYNAETDPEVKSVMKDIGKDLDRWITEEEIQESADLMTNLHERNKRFMEKKINKLKREMELFGPQAVVSKYREYAEEEEEDYLWWLDLPHVLCIELYTVDKGEQRVGFYSLEMATDLELEPKPHHVIAFEDASDCKNLCYIIQAHLEMLGTGQAFVVPRPPKDAFREAKASGFSVTVIRRAELQLNVDQTLEEVEEQITEIGSKIYHDAIMEERSVDISSIMKGVLGGG 1125
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008529 vs. ExPASy TrEMBL
Match: A0A067HF30_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001135mg PE=4 SV=1)

HSP 1 Score: 575.859 bits (1483), Expect = 0.000e+0
Identity = 300/393 (76.34%), Postives = 340/393 (86.51%), Query Frame = 2 
Query:    2 EKLAFFQGLXXXXXXXXXXLSHLHEWLHSNIENLDYGADGISLHDPPEKIIPRWKGPPLEKSPEFLSNFQEQRKALFTGKVGMTYPAKRDGQSFLQKPTESPINEDLAISSSESDLTRK--VHDTDTKDPKIVIESSDGSVKPGKKSGKEYWQHTKKWSRGFLECYNAETDPEVKSIMKDMGKDLDRWITEKEVQEAADLMKKLPERXXXXXXXXXXXXXREMELFGPQAVVSKYQEYAEEKEEDYLWWLDLPHVLCIELYTFENEGQRIGFYALEMAADLELEPKPHHVIAFEDTGDCKSFCYIMQAHLDMLGNGRAFIVPQPPKDAFREAKANGFGVTVIKKGELQLNVDQTLEEVEEQICEIGSKMYHDKIMRERSVDISSLMKGMLGVG 1174
            +KLAFF+GLEKKVE ENEKL  LHE+LHSNIENLDYGADGIS++DPPEKIIPRWKGPPLEK+PEFL +F +QRKALF G  G +YP K+D ++FLQ PTESP  E  A S     L RK  + D D    K VI+ SDGSVKPGKK GKE+WQ+TKKWSRGFLE YNAETDPEVKS+MKD+GKDLDRWITE+E+QE+ADLM  L ERNK+FMEKK+NKLKREMELFGPQAVVSKY+EYAEE+EEDYLWWLDLPHVLCIELYT +   QR+GFY+LEMA DLELEPKPHHVIAFED  DCK+ CYI+QAHL+MLG G+AF+VP+PPKDAFREAKA+GF VTVI++ ELQLNVDQTLEEVEEQI EIGSK+YHD IM ERSVDISS+MKG+LG G
Sbjct:  738 DKLAFFKGLEKKVEKENEKLLQLHEYLHSNIENLDYGADGISIYDPPEKIIPRWKGPPLEKNPEFLDDFLKQRKALFVGNTGSSYPVKKDEENFLQNPTESPTLEKDATS-----LARKKEIQDNDPNHSKTVIDGSDGSVKPGKKYGKEFWQYTKKWSRGFLESYNAETDPEVKSVMKDIGKDLDRWITEEEIQESADLMTNLHERNKRFMEKKINKLKREMELFGPQAVVSKYREYAEEEEEDYLWWLDLPHVLCIELYTVDKGEQRVGFYSLEMATDLELEPKPHHVIAFEDASDCKNLCYIIQAHLEMLGTGQAFVVPRPPKDAFREAKASGFSVTVIRRAELQLNVDQTLEEVEEQITEIGSKIYHDAIMEERSVDISSIMKGVLGGG 1125
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008529 vs. ExPASy TrEMBL
Match: B9I8Y5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s09460g PE=4 SV=1)

HSP 1 Score: 575.859 bits (1483), Expect = 0.000e+0
Identity = 287/391 (73.40%), Postives = 334/391 (85.42%), Query Frame = 2 
Query:    2 EKLAFFQGLXXXXXXXXXXLSHLHEWLHSNIENLDYGADGISLHDPPEKIIPRWKGPPLEKSPEFLSNFQEQRKALFTGKVGMTYPAKRDGQSFLQKPTESPINEDLAISSSESDLTRKVHDTDTKDPKIVIESSDGSVKPGKKSGKEYWQHTKKWSRGFLECYNAETDPEVKSIMKDMGKDLDRWITEKEVQEAADLMKKLPERXXXXXXXXXXXXXREMELFGPQAVVSKYQEYAEEKEEDYLWWLDLPHVLCIELYTFENEGQRIGFYALEMAADLELEPKPHHVIAFEDTGDCKSFCYIMQAHLDMLGNGRAFIVPQPPKDAFREAKANGFGVTVIKKGELQLNVDQTLEEVEEQICEIGSKMYHDKIMRERSVDISSLMKGMLGVG 1174
            +KL FF+GLEKKVE ENEKL  +HE+LHS+IENLDYGADGISL+D PEKIIPRWKGPPLEK+P+FL+NF EQ+ A+     G +YP K+D  + LQK  +S ++E +  +S  +  ++K+   D+K+ K+VIE SDGSV+ GKKSGKEYWQHTKKWSRGFLE YNAE+DPEVKS MKD+GKDLDRWITE+E+QEAADLM KLPERNK   +K      REMELFGPQAVVSKY+EYAEEKEEDYLWWLDLPHVLCIELYT EN  Q+IGFY+LEMAADLELEPKP HVIAFED GDCK+ C I+QAH+DM+G G AF+VP+PPKDAFREAKANGFGVTVI+KGELQLNVDQ LEEVEEQ+ EIGSK+YHDK+M ERSVDI+SLMKG+LGVG
Sbjct:  737 DKLKFFKGLEKKVEKENEKLVQVHEYLHSSIENLDYGADGISLYDSPEKIIPRWKGPPLEKNPQFLNNFLEQQNAIAATNAGTSYPVKKDEDNLLQKSNKSSVDESVG-TSLPNYASKKLSCMDSKNSKVVIEGSDGSVRSGKKSGKEYWQHTKKWSRGFLESYNAESDPEVKSTMKDIGKDLDRWITEEEIQEAADLMTKLPERNKLIEKKITKLK-REMELFGPQAVVSKYREYAEEKEEDYLWWLDLPHVLCIELYTIENGEQKIGFYSLEMAADLELEPKPCHVIAFEDAGDCKNLCCIIQAHMDMVGTGHAFVVPRPPKDAFREAKANGFGVTVIRKGELQLNVDQMLEEVEEQVAEIGSKIYHDKLMGERSVDINSLMKGVLGVG 1125
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008529 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0MHP2_GOSAR0.000e+0100.00Tenomodulin OS=Gossypium arboreum GN=F383_02739 PE... [more]
A0A0D2QQM4_GOSRA0.000e+098.98Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061DSG2_THECC0.000e+088.24Embryo defective 1703, putative isoform 2 OS=Theob... [more]
A0A061DSN4_THECC0.000e+088.24Embryo defective 1703, putative isoform 1 OS=Theob... [more]
A0A0D2P730_GOSRA0.000e+099.07Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A067K9J0_JATCU0.000e+074.94Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
M5X5A5_PRUPE0.000e+076.86Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A067HES7_CITSI0.000e+076.34Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
A0A067HF30_CITSI0.000e+076.34Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
B9I8Y5_POPTR0.000e+073.40Uncharacterized protein OS=Populus trichocarpa GN=... [more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0008529 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34962:SF1PROTEIN EMBRYO DEFECTIVE 1703coord: 1..399
NoneNo IPR availablePANTHERPTHR34962FAMILY NOT NAMEDcoord: 1..399

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0008529 ID=g.arboreum_cottongen_reftransV1_0008529; Name=g.arboreum_cottongen_reftransV1_0008529; organism=Gossypium arboreum; type=contig; length=1357bp
AGAGAAACTTGCATTCTTCCAAGGTCTGGAGAAGAAAGTTGAGAATGAAA
ATGAAAAACTATCTCACCTCCATGAGTGGCTTCATTCAAATATTGAAAAC
CTTGATTACGGAGCAGATGGTATCAGCCTGCATGATCCACCAGAAAAAAT
TATACCACGCTGGAAGGGGCCCCCATTAGAGAAAAGTCCTGAGTTCCTCA
GCAACTTCCAAGAACAGCGTAAAGCACTTTTTACCGGAAAAGTTGGTATG
ACATATCCAGCAAAAAGAGATGGGCAAAGTTTCCTTCAGAAACCCACAGA
ATCCCCCATTAATGAAGATTTAGCTATTTCCTCATCAGAATCAGATTTGA
CTAGGAAAGTTCATGATACTGATACAAAGGATCCCAAGATAGTTATTGAA
AGCAGTGATGGCTCTGTCAAACCTGGTAAAAAATCCGGAAAGGAGTATTG
GCAGCACACAAAGAAATGGTCCCGTGGGTTCTTGGAATGTTATAATGCAG
AAACTGACCCTGAAGTCAAATCCATTATGAAGGATATGGGGAAGGATTTG
GACCGATGGATCACTGAAAAAGAGGTACAAGAAGCGGCAGATCTTATGAA
GAAACTTCCTGAAAGAAACAAAAAGTTCATGGAAAAGAAACTCAACAAGC
TTAAAAGAGAAATGGAATTATTTGGACCACAAGCTGTTGTTAGCAAGTAT
CAAGAGTATGCAGAGGAGAAGGAAGAAGATTATTTGTGGTGGTTAGATCT
TCCACATGTACTGTGTATTGAATTATACACATTTGAAAATGAGGGGCAGA
GGATAGGATTTTATGCACTGGAGATGGCAGCAGATCTTGAACTTGAGCCA
AAACCACACCATGTGATTGCTTTTGAAGATACTGGTGATTGCAAAAGCTT
TTGTTACATCATGCAGGCTCACTTGGATATGCTAGGAAACGGCAGGGCCT
TTATTGTTCCACAGCCACCTAAGGATGCTTTTCGGGAAGCCAAAGCAAAC
GGTTTTGGCGTAACTGTGATCAAGAAAGGGGAGCTACAGCTGAATGTGGA
TCAAACTTTAGAAGAGGTGGAAGAGCAAATATGTGAGATTGGGAGCAAGA
TGTACCATGATAAGATCATGCGTGAACGCTCTGTGGATATAAGCTCATTG
ATGAAGGGCATGCTTGGTGTTGGTGATAAACCCAGGAGGAGAAGGTCAAA
GAAGAAGCTCAAAAAGCCTTCCAAGAAATGAATTGAGGACCAATTGACTA
CTTGAGAAGTGCCGGGTCACTGAGGTTCGAAATTAATTTCTTTTCCTTGG
TCTCTACTTGTAATTCAAACATTACAGCTTTCATAAAAAAAATCATAAGT
GCCTGCA
back to top