g.arboreum_cottongen_reftransV1_0018389, g.arboreum_cottongen_reftransV1_0018389 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0018389
Unique Nameg.arboreum_cottongen_reftransV1_0018389
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1230
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr10chromosomeg.arboreum_cottongen_reftransV1_0018389:1..1230 .
Chr10:69478548..69479777 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0018389 vs. ExPASy TrEMBL
Match: A0A0D2TBK1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G015000 PE=4 SV=1)

HSP 1 Score: 741.495 bits (1913), Expect = 0.000e+0
Identity = 368/385 (95.58%), Postives = 377/385 (97.92%), Query Frame = -1
Query:    1 MEDSSPKEDNPGVLKLLEALKQAIQELQAHPTHKSVQSNSSPIKALLELETESDSIISKDPLLSTLSRHLAELKILVETLERNRGYGLRSFLTRRVSTYSISRVAGSIESEIQALMDRGSIDSLINALKDPWKDEDELSRLLSQFEHRVSQGFNPELQDSVLKSKAFSVLQTVLCDPNCSKQIREKAAFCVAALIRFNKDVFVGQVNMGDTIQALLEMKSAHSVKVLCELITFIKSPFVDVILCNGELPKILTLLESKDLSMKVVVFNCILEIGYFGRKEAVEAMLNGGLIEKLVELQRSEFGGDLIGMGKYGNENEVSEGKKREKKFLENHPFASCVARFAVQLEVGEGLRKREKRAFKPEILEKVREASVNDAEAATIIAEVL 1155
            MEDSSPKED+PGVLKLLEALKQA  ELQAHPT+KSVQSNSSPIKALLELETESDSIISKDP LSTLSRHLAELKILVETLERNRGYGLRSFLTRRVST+SISRVAGSIESE+QALMDRGSIDSLINALKDPWKDEDEL+RLLSQFE RVSQGFNPELQDSVLKSKAFSVLQTVLCDPNCSKQIRE+AAFCVAALIRFNKDVFVGQVNMGDTIQALLEMKSAHSVK+LCELI FIKSPFVD ILCNGELPKILTLLESKDLSMKVVVF+CILEIGYFGRKEAVEAMLNGGLIEKLVELQRSEFGGDLIGMGKYGNENE SEG+KREKKFLENHPFASCVARFAVQLEVGEGLRKREKRAFK EILEKVREASVNDAEAATIIAEVL
Sbjct:    1 MEDSSPKEDDPGVLKLLEALKQASHELQAHPTYKSVQSNSSPIKALLELETESDSIISKDPHLSTLSRHLAELKILVETLERNRGYGLRSFLTRRVSTHSISRVAGSIESEVQALMDRGSIDSLINALKDPWKDEDELARLLSQFEVRVSQGFNPELQDSVLKSKAFSVLQTVLCDPNCSKQIREQAAFCVAALIRFNKDVFVGQVNMGDTIQALLEMKSAHSVKILCELIKFIKSPFVDEILCNGELPKILTLLESKDLSMKVVVFDCILEIGYFGRKEAVEAMLNGGLIEKLVELQRSEFGGDLIGMGKYGNENEESEGQKREKKFLENHPFASCVARFAVQLEVGEGLRKREKRAFKAEILEKVREASVNDAEAATIIAEVL 385          
BLAST of g.arboreum_cottongen_reftransV1_0018389 vs. ExPASy TrEMBL
Match: A0A061GVT8_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_038176 PE=4 SV=1)

HSP 1 Score: 587.8 bits (1514), Expect = 0.000e+0
Identity = 306/388 (78.87%), Postives = 340/388 (87.63%), Query Frame = -1
Query:    1 MEDSSPKEDNPGVLKLLEALKQAIQELQAHPTHKSVQSNSSPIKALLELETESDSIISKDPLLSTLSRHLAELKILVETLERNRGYGLRSFLTRRVSTYSISRVAGSIESEIQALMDRGSIDSLINALKDPWKDEDELSRLLSQFEHRVSQGFNPELQDSVLKSKAFSVLQTVLCDPNCSKQIREKAAFCVAALIRFNKDVFVGQVNMGDTIQALLEMKSAHSVKVLCELITFIKSPFVDVILCNGELPKILTLLESKDLSMKVVVFNCILEIGYFGRKEAVEAMLNGGLIEKLVELQRSEFGGDLIGMGKY---GNENEVSEGKKREKKFLENHPFASCVARFAVQLEVGEGLRKREKRAFKPEILEKVREASVNDAEAATIIAEVL 1155
            MED S KEDNP VLK+LEALKQA  ELQAHPT+KS  SNSS IKALLELETESDSI+S DP L TLS+HLA+LK  VETL+R RGYGLRSFLTRRVST+SISRVAGSIESEIQA +DR SI+SLI  LK+P K+EDEL RLL+QFE RVSQGFN ELQ+ VLKSKAFSVLQ+VLCDPNCSK+IRE AAFCVAALIRFNKDVFVGQVNMG TI ALL+M+S HS+KVLCELI F KSPFVD I+CNGE+P+ILTLLE+KDL MKV+ F+CILEIGYFGRKEA EA+L GGLI+ LVELQRSE GGDLI MGK+     E E  + +KREK+FLENHPFASCVARFAVQLEVGEGLR+REKRAFK EILE+VR AS++DAEAATIIAEVL
Sbjct:    1 MEDPSSKEDNPRVLKVLEALKQASHELQAHPTYKSANSNSSAIKALLELETESDSILSNDPHLFTLSQHLADLKTHVETLKRTRGYGLRSFLTRRVSTHSISRVAGSIESEIQAWIDRESIESLIKGLKEPGKNEDELVRLLTQFEDRVSQGFNCELQNLVLKSKAFSVLQSVLCDPNCSKRIRESAAFCVAALIRFNKDVFVGQVNMGGTIHALLDMRSTHSLKVLCELIKFTKSPFVDEIVCNGEIPEILTLLETKDLDMKVLAFDCILEIGYFGRKEAGEALLKGGLIKNLVELQRSELGGDLIEMGKFEAENKEIEEKKREKREKRFLENHPFASCVARFAVQLEVGEGLRQREKRAFKLEILERVRGASISDAEAATIIAEVL 388          
BLAST of g.arboreum_cottongen_reftransV1_0018389 vs. ExPASy TrEMBL
Match: U5G650_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s06240g PE=4 SV=1)

HSP 1 Score: 491.886 bits (1265), Expect = 2.619e-169
Identity = 257/386 (66.58%), Postives = 306/386 (79.27%), Query Frame = -1
Query:    1 MEDSSPKEDNPGVLKLLEALKQAIQELQAHPTHKSVQSNSSPIKALLELETESDSIISKDPLLSTLSRHLAELKILVETLERNRGYGLRSFLTRRVSTYSISRVAGSIESEIQALMDRGSIDSLINALKDPWK-DEDELSRLLSQFEHRVSQGFNPELQDSVLKSKAFSVLQTVLCDPNCSKQIREKAAFCVAALIRFNKDVFVGQVNMGDTIQALLEMKSAHSVKVLCELITFIKSPFVDVILCNGELPKILTLLESKDLSMKVVVFNCILEIGYFGRKEAVEAMLNGGLIEKLVELQRSEFGGDLIGMGKYGNENEVSEGKKREKKFLENHPFASCVARFAVQLEVGEGLRKREKRAFKPEILEKVREASVNDAEAATIIAEVL 1155
            MED+  KE+   VLK+LEALKQA  +LQ HP   S +SNS  +KALLELETESD+I+SKDPLLSTLS HLA LK L +TL+R+ G+GLRSFLTRRVST SISRVAGSIESEIQA +DR SID L+  LKDP + +E EL  LLSQFE RV QGFN ELQD VLKSK F +L+ + CDP+CS+++RE+ AF V+ALIRFNKDVFVGQV MG  I  ++ M S  S+KVL  LI  IKSP VD I  NGE+PKI++ L+ KDL ++VV  +CILEIGYFGRKEA+EAML   LI+KLVELQRS+ GGDLI +G + +E E  +G   E +FLENHPFASCVARFAVQLEVGEGLR+RE+RAFK EIL+ VR A V++AEAATI+AEVL
Sbjct:    2 MEDTPSKEEITRVLKVLEALKQASHDLQTHPGPNSAESNSPALKALLELETESDTILSKDPLLSTLSEHLASLKSLFDTLQRSCGHGLRSFLTRRVSTQSISRVAGSIESEIQAWIDRESIDRLMKGLKDPLQIEEGELVGLLSQFEDRVLQGFNRELQDLVLKSKIFCLLERISCDPSCSRKVREQCAFVVSALIRFNKDVFVGQVLMGRLIHGVVSMASWKSMKVLSSLIKSIKSPLVDEIESNGEIPKIISFLDYKDLHLRVVTMDCILEIGYFGRKEAIEAMLREALIKKLVELQRSKLGGDLIDIGMFDDEKERGKG---ETRFLENHPFASCVARFAVQLEVGEGLRQRERRAFKQEILKTVRNACVSNAEAATIVAEVL 384          
BLAST of g.arboreum_cottongen_reftransV1_0018389 vs. ExPASy TrEMBL
Match: A0A0A0LT75_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G222880 PE=4 SV=1)

HSP 1 Score: 487.649 bits (1254), Expect = 1.373e-167
Identity = 244/387 (63.05%), Postives = 313/387 (80.88%), Query Frame = -1
Query:    1 MEDSSPKEDNPGVLKLLEALKQAIQELQAHPTHKSVQSNSSPIKALLELETESDSIISKDPLLSTLSRHLAELKILVETLERNRGYGLRSFLTRRVSTYSISRVAGSIESEIQALMDRGSIDSLINALKDPWKDEDELSRLLSQFEHRVSQGFNPELQDSVLKSKAFSVLQTVLCDPNCSKQIREKAAFCVAALIRFNKDVFVGQVNMGDTIQALLEMKSAHSVKVLCELITFIKSPFVDVILCNGELPKILTLLESKDLSMKVVVFNCILEIGYFGRKEAVEAMLNGGLIEKLVELQRSEFGGDLIGMGKYGNE--NEVSEGKKREKKFLENHPFASCVARFAVQLEVGEGLRKREKRAFKPEILEKVREASVNDAEAATIIAEVL 1155
            M+DSS  ED+P V+++LEALKQA  ELQ++P  +S + NS  IKALLELE ESD  +S DP LSTLS HLA LK LV+TL+++RGY  RSFLTRR +T S+S+VAGSIESEIQA +DR S+D+L+ ALK+P  DE+EL +LL+QFE+R++QGFN ELQD +LKSK FS+L++++C+PN SK IRE +A+ +  ++RFNKDVFVGQ+ MG TI AL+EM S+HS+K+LC LI  I+SP V+ I  NG++PKI++LL   DL ++V+  +CI+EIGYFGRK+ V+AML   LI++LVELQRSE GGDLIG+GK+  E   EV+ G   EK+FLE HPFASCVA+F VQLEVGEGLRKREKRA K EIL++VR+A V+DAEAATIIAEVL
Sbjct:    1 MDDSSKNEDSPRVVRVLEALKQASHELQSNPNPRSHEFNSPAIKALLELEVESDKNLSTDPNLSTLSHHLANLKSLVDTLQKSRGYSPRSFLTRRFATNSVSQVAGSIESEIQAWIDRKSLDTLVRALKEPSIDENELIKLLTQFENRLAQGFNRELQDLMLKSKVFSLLESIVCNPNFSKTIREHSAYVIGGMVRFNKDVFVGQILMGPTIHALVEMASSHSLKILCSLIRLIRSPLVEEIESNGDIPKIISLLNCADLQIRVLAMDCIVEIGYFGRKDTVDAMLEQDLIDRLVELQRSELGGDLIGLGKHTAEESREVT-GSAGEKRFLEKHPFASCVAKFGVQLEVGEGLRKREKRAIKGEILKRVRKACVSDAEAATIIAEVL 386          
BLAST of g.arboreum_cottongen_reftransV1_0018389 vs. ExPASy TrEMBL
Match: U7E1A3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0025s00630g PE=4 SV=1)

HSP 1 Score: 488.419 bits (1256), Expect = 1.824e-165
Identity = 259/386 (67.10%), Postives = 306/386 (79.27%), Query Frame = -1
Query:    1 MEDSSPKEDNPGVLKLLEALKQAIQELQAHPTHKSVQSNSSPIKALLELETESDSIISKDPLLSTLSRHLAELKILVETLERNRGYGLRSFLTRRVSTYSISRVAGSIESEIQALMDRGSIDSLINALKDPWK-DEDELSRLLSQFEHRVSQGFNPELQDSVLKSKAFSVLQTVLCDPNCSKQIREKAAFCVAALIRFNKDVFVGQVNMGDTIQALLEMKSAHSVKVLCELITFIKSPFVDVILCNGELPKILTLLESKDLSMKVVVFNCILEIGYFGRKEAVEAMLNGGLIEKLVELQRSEFGGDLIGMGKYGNENEVSEGKKREKKFLENHPFASCVARFAVQLEVGEGLRKREKRAFKPEILEKVREASVNDAEAATIIAEVL 1155
            MED S KE+   VLK+LEALKQA  ELQ  P+    +SNS  IKALLELETESD+I+SKDP LS LS+HL++LK LV+TL++   +GLRSFLTRRV   SISRVAGSI SEIQA +DR SI+SLI  L +P + +ED+L  LLSQFE RVSQGFN ELQD VLKSK F +L+ VLC+PNCSK++RE+ AF V+ALIRFNKDVF GQV MG  I AL+ M S  S+KVLC LI  IKSP VD I  NGE+PKI++ L+ KDL  +VV  +CILEIGYFGRKEA+EAML  GLI+KL+ELQRSE G DLI MG + +E E  +G   EKKF E+HPFASCVARFAVQLEVGEGLR+RE+RAFK EIL++VREA V+DAEAAT+IAEVL
Sbjct:    2 MEDPSSKEEITRVLKVLEALKQASHELQTLPSTNLTESNSPAIKALLELETESDTILSKDPYLSALSQHLSKLKSLVDTLQKCCDHGLRSFLTRRVLIQSISRVAGSIGSEIQAWIDRKSIESLIKGLNEPLQTEEDDLVSLLSQFEDRVSQGFNRELQDLVLKSKIFCLLERVLCNPNCSKKVREQCAFVVSALIRFNKDVFAGQVLMGPLIHALVSMASWGSMKVLCSLIKSIKSPLVDEIESNGEIPKIISFLDYKDLHWRVVAMDCILEIGYFGRKEAIEAMLREGLIKKLMELQRSELGEDLIDMGMFDDEKERGKG---EKKFSESHPFASCVARFAVQLEVGEGLRQRERRAFKQEILKRVREACVSDAEAATVIAEVL 384          
BLAST of g.arboreum_cottongen_reftransV1_0018389 vs. ExPASy TrEMBL
Match: A0A067G4V8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035696mg PE=4 SV=1)

HSP 1 Score: 479.945 bits (1234), Expect = 3.020e-164
Identity = 262/400 (65.50%), Postives = 316/400 (79.00%), Query Frame = -1
Query:    1 MEDSSPKEDNPGVLKLLEALKQAIQELQAHPTHKSVQSNSSPIKALLELETESDSIISKDPLLSTLSRHLAELKILVETLERNRGYG-LRSFLTRRVSTYSISRVAGSIESEIQALMDRGSIDSLINALKDPWKDE---DELSRLLSQFEHRVSQGFNPELQDSVLKSKAFSVLQTVLCDPNCSKQIREKAAFCVAALIRFNKDVFVGQVNMGDTIQALLEMKSAHSVKVLCELITFIKSPFVDVILCNGELPKILTLLESKDLSMKVVVFNCILEIGYFGRKEAVEAMLNGGLIEKLVELQRSEFGGDLIGMGKY----GNENEVSEG-------KKREKKFLENHPFASCVARFAVQLEVGEGLRKREKRAFKPEILEKVREASVNDAEAATIIAEVL 1155
            MED S +   P VL +LEALKQA  +LQAHP+  S + NSS IKALLELETESD+++S+DP LSTLS+HLA+LK LV+TL ++RG   LRSFL RRVST+SISRVAGSIE+EIQA +DR  I+ L  ALKD   D    DEL +LL+QFE RVSQGF+ ELQD VLKSK FS+L+T+LC+P+CSK +RE++A+ +A+LIRFNKDVFVGQV MG T+QALL M S HS KVLCELI  IKSP VD I  NGE+PKI++LL+ KDL MK++  +CILEIGYFGRKEA++AML  GL++KLVELQRSE GGDLI M ++     N+  V  G       + RE+KFL+ HPFASCVARFAVQLEVGEGLR+REKRA K EIL +VREAS +DAEAATI+AEVL
Sbjct:    1 MEDPSVQVQAPRVLNVLEALKQASVDLQAHPSSNSAEFNSSAIKALLELETESDALLSEDPHLSTLSQHLADLKTLVQTLHKSRGRNSLRSFLARRVSTHSISRVAGSIETEIQAWIDREHIERLTKALKDLDGDGGNVDELVKLLTQFEDRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSSTHSSKVLCELIKSIKSPLVDEIESNGEIPKIISLLDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVELQRSELGGDLIEMERFEEKEKNDRGVGAGGVVESKRESRERKFLKRHPFASCVARFAVQLEVGEGLRQREKRALKQEILLRVREASASDAEAATIVAEVL 400          
BLAST of g.arboreum_cottongen_reftransV1_0018389 vs. ExPASy TrEMBL
Match: V4UJL9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008496mg PE=4 SV=1)

HSP 1 Score: 479.174 bits (1232), Expect = 5.868e-164
Identity = 259/400 (64.75%), Postives = 318/400 (79.50%), Query Frame = -1
Query:    1 MEDSSPKEDNPGVLKLLEALKQAIQELQAHPTHKSVQSNSSPIKALLELETESDSIISKDPLLSTLSRHLAELKILVETLERNRGYG-LRSFLTRRVSTYSISRVAGSIESEIQALMDRGSIDSLINALKD---PWKDEDELSRLLSQFEHRVSQGFNPELQDSVLKSKAFSVLQTVLCDPNCSKQIREKAAFCVAALIRFNKDVFVGQVNMGDTIQALLEMKSAHSVKVLCELITFIKSPFVDVILCNGELPKILTLLESKDLSMKVVVFNCILEIGYFGRKEAVEAMLNGGLIEKLVELQRSEFGGDLIGMGKY----GNENEVSEG-------KKREKKFLENHPFASCVARFAVQLEVGEGLRKREKRAFKPEILEKVREASVNDAEAATIIAEVL 1155
            MED S +   P VL +LEALKQA  +LQAHP+  S + NSS IKALLELETESD+++S+DP LSTLS+HLA+LK LV+TL ++RG   LRSFL RRVST+SISRVAGSIE+EIQA +DR  I+ L  ALKD      +EDEL +LL++FE RVSQGF+ ELQD VLKSK FS+L+T+LC+P+CSK +RE++A+ +A+LIRFNKDVFVGQV MG T+QALL M S HS+KVLCELI  IKSP VD I  NGE+PKI++L++ KDL MK++  +CILEIGYFGRKEA++AML  GL++KLVELQRSE GGDLI M ++     N+  V  G       + RE+KFL+ HPFASCVARFAVQLEVGEGLR+RE+RA K EIL +VREAS +DAEAATI+AEVL
Sbjct:    1 MEDPSVQVQAPRVLNVLEALKQASVDLQAHPSSNSAEFNSSAIKALLELETESDALLSEDPHLSTLSQHLADLKTLVQTLHKSRGRNSLRSFLARRVSTHSISRVAGSIETEIQAWIDREHIERLTKALKDLDGGGGNEDELVKLLTRFEGRVSQGFSRELQDLVLKSKVFSLLETILCNPSCSKSLREQSAYSIASLIRFNKDVFVGQVLMGPTVQALLTMSSTHSIKVLCELIKSIKSPLVDEIESNGEIPKIISLVDMKDLQMKLLAMDCILEIGYFGRKEAIDAMLEQGLVKKLVELQRSELGGDLIEMERFEEKEKNDRGVGAGGVVESKRESRERKFLKRHPFASCVARFAVQLEVGEGLRQRERRALKQEILLRVREASASDAEAATIVAEVL 400          
BLAST of g.arboreum_cottongen_reftransV1_0018389 vs. ExPASy TrEMBL
Match: A0A067K215_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17013 PE=4 SV=1)

HSP 1 Score: 471.47 bits (1212), Expect = 4.073e-161
Identity = 254/390 (65.13%), Postives = 304/390 (77.95%), Query Frame = -1
Query:    1 MEDSSPKEDNPGVLKLLEALKQAIQELQAHPTHKSVQSNSSPIKALLELETESDSIISKDPLLSTLSRHLAELKILVETLERNRGYGLRSFLTRRVSTYSISRVAGSIESEIQALMDRGSIDSLINALKDPWKDEDE--LSRLLSQFEHRVSQGFNPELQDSVLKSKAFSVLQTVLCDP---NCSKQIREKAAFCVAALIRFNKDVFVGQVNMGDTIQALLEMKSAHSVKVLCELITFIKSPFVDVILCNGELPKILTLLESKDLSMKVVVFNCILEIGYFGRKEAVEAMLNGGLIEKLVELQRSEFGGDLIGMGKYGNENEVSEGKKREKKFLENHPFASCVARFAVQLEVGEGLRKREKRAFKPEILEKVREASVNDAEAATIIAEVL 1155
            ME+ S KE+   VLK+LEALKQA  +LQ HPT KS  SNS  IKALLELETESD+I+SKDP LSTLS+HL  L+ L+E+L+ +RGY  R+FL RRVST+SISRVAGSIESEIQA +DR SI+SL  ALK+P K+E+E  L  LL+QFE+RVSQGFN ELQD VLKSK   +L+ ++CDP   N SK+I+E+  F VAALIRFNKDVFVGQV MG  I AL+ M S  S++VLC LI  IKSP VD I  NGE+PKI+  L+ KDL ++V+   CILEIGYFGRKEA+EAML  GLI+KLVELQR + G DLI +  +  + E    K +EKK LE  PFA CVA+FAVQLEVGEGLR+REKRAFK EILE+V+EASV+DAEAATI+AEVL
Sbjct:    1 MENPSSKEEISRVLKVLEALKQASHDLQLHPTPKSTDSNSPAIKALLELETESDTILSKDPNLSTLSQHLTSLRTLIESLQESRGYSFRNFLNRRVSTHSISRVAGSIESEIQAWIDRESIESLTAALKEPGKNENEEVLVSLLTQFENRVSQGFNRELQDLVLKSKILYILENIICDPNNNNWSKRIKEQCGFVVAALIRFNKDVFVGQVLMGPLIHALVSMASWKSIRVLCSLIKLIKSPLVDEIESNGEIPKIICFLDYKDLQIRVLAMECILEIGYFGRKEAIEAMLKEGLIKKLVELQRLDLGSDLIDISNF--DEEKESEKIKEKKVLERFPFAGCVAKFAVQLEVGEGLRQREKRAFKQEILERVKEASVSDAEAATIVAEVL 388          
BLAST of g.arboreum_cottongen_reftransV1_0018389 vs. ExPASy TrEMBL
Match: B9SXP5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0003550 PE=4 SV=1)

HSP 1 Score: 466.848 bits (1200), Expect = 2.397e-159
Identity = 245/389 (62.98%), Postives = 305/389 (78.41%), Query Frame = -1
Query:    1 MEDSSPKEDNPGVLKLLEALKQAIQELQAHPTHKSVQSNSSPIKALLELETESDSIISKDPLLSTLSRHLAELKILVETLERNRGYGLRSFLTRRVSTYSISRVAGSIESEIQALMDRGSIDSLINALK-DPWKDEDELSRLLSQFEHRVSQGFNPELQDSVLKSKAFSVLQTVLCDPNCSKQIREKAAFCVAALIRFNKDVFVGQVNMGDTIQALLEMKSAHSVKVLCELITFIKSPFVDVILCNGELPKILTLLESKDLSMKVVVFNCILEIGYFGRKEAVEAMLNGGLIEKLVELQRSEFGGDLIGMGKY---GNENEVSEGKKREKKFLENHPFASCVARFAVQLEVGEGLRKREKRAFKPEILEKVREASVNDAEAATIIAEVL 1155
            MED S +++   V+K+LEALKQA  +LQ+HP  KS    S   +ALLEL+TES++I+SKDP LSTLS+HL+ LK LV+TL+++RG  LR+FL RRVST+SISRVAGSIESEIQA +DR SID+L   LK +  +DE EL RLL+QFE+R+SQGF+ ELQD +LKSK F +L+ ++CD NC K +RE+ AF VAALI FNKDVFVGQV MG  I AL+ M S  ++KVLC LI  IKSP VD I  NGE+PKI++ L+ KDL ++V+  +C+LEIGYFGRKEA+EAML  GLI+KLVELQR E GG LI M K+   G + E S  + ++++F E+HPFASCVARFAVQLEVGEGLR+REKR FK EILEKVREASV+DAE A I+AEVL
Sbjct:    1 MEDPSSRQEISRVIKVLEALKQASHDLQSHPIPKS----SDSFRALLELQTESETILSKDPNLSTLSQHLSRLKSLVDTLQKSRGRTLRNFLARRVSTHSISRVAGSIESEIQAWIDRESIDNLTAQLKKEGARDEPELIRLLTQFENRISQGFDRELQDLILKSKIFVLLEKIICDSNCLKSVREQCAFVVAALISFNKDVFVGQVLMGSLIHALVSMVSWKAMKVLCTLINLIKSPLVDEIESNGEIPKIISFLDYKDLELRVLTMDCVLEIGYFGRKEAIEAMLKEGLIKKLVELQRLELGGTLIDMDKFDGVGGKRE-STVESKDQRFSESHPFASCVARFAVQLEVGEGLRQREKRGFKLEILEKVREASVSDAETAAIVAEVL 384          
BLAST of g.arboreum_cottongen_reftransV1_0018389 vs. ExPASy TrEMBL
Match: F6HCG4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0118g00250 PE=4 SV=1)

HSP 1 Score: 466.848 bits (1200), Expect = 2.639e-159
Identity = 247/397 (62.22%), Postives = 301/397 (75.82%), Query Frame = -1
Query:    1 MEDSSPKEDNPGVLKLLEALKQAIQELQAHPTHKSVQSNSSPIKALLELETESDSIISKDPLLSTLSRHLAELKILVETLERNRGYGLRSFLTRRVSTYSISRVAGSIESEIQALMDRGSIDSLINALKDPWKDEDELSRLLSQFEHRVSQGFNPELQDSVLKSKAFSVLQTVLCDPNCSKQIREKAAFCVAALIRFNKDVFVGQVNMGDTIQALLEMKSAHSVKVLCELITFIKSPFVDVILCNGELPKILTLLESKDLSMKVVVFNCILEIGYFGRKEAVEAMLNGGLIEKLVELQRSEFGGDLIGMGKYGNENEVS-------EGKK-----REKKFLENHPFASCVARFAVQLEVGEGLRKREKRAFKPEILEKVREASVNDAEAATIIAEVL 1155
            ME++S    NP VL +LEAL+QA   LQ +PT  S  SNSS IKALLELETES+S++S DP LS LSRHL+ LK LV TL+++RG+ L SFLTRR ST SISRVAGSIESEI+A +DR  ++ L  AL++   D+DEL +LL+QFE+RVSQGF+ ELQD +LKSK FS+L++VLC+PNCSK+IRE + F V+ALIRFNKDVFVGQV MG T+ AL+ M S  S+ VL  LI  IKSP VD I  NGE+PKI++   S+DL +++   +C  EIGY+GRKEA+EAML  G+IEKL+ELQRSE GG LI MG +  E  +        EG +     REK+FLE HPFASCVARFAVQLEVGEGLR+REKRAFK EIL  VREA  +DAEAATI+AEVL
Sbjct:    1 MEEAS-DHPNPQVLTVLEALRQASHHLQTNPTLNSDNSNSSAIKALLELETESNSLLSSDPHLSALSRHLSSLKDLVHTLQKSRGHSLTSFLTRRASTQSISRVAGSIESEIRAWIDRERVEDLTRALRE-LADDDELVKLLTQFENRVSQGFSHELQDLILKSKVFSLLESVLCNPNCSKKIREHSGFAVSALIRFNKDVFVGQVLMGRTVLALIAMGSRSSLTVLWSLIKSIKSPLVDEIESNGEIPKIISFFSSQDLDIRIAAVDCAFEIGYYGRKEAIEAMLKEGVIEKLLELQRSEMGGILIEMGWFNEEENMKSFDGVDIEGIRRSRDSREKRFLETHPFASCVARFAVQLEVGEGLRQREKRAFKQEILGLVREACASDAEAATIVAEVL 395          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0018389 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2TBK1_GOSRA0.000e+095.58Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061GVT8_THECC0.000e+078.87Uncharacterized protein OS=Theobroma cacao GN=TCM_... [more]
U5G650_POPTR2.619e-16966.58Uncharacterized protein OS=Populus trichocarpa GN=... [more]
A0A0A0LT75_CUCSA1.373e-16763.05Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
U7E1A3_POPTR1.824e-16567.10Uncharacterized protein OS=Populus trichocarpa GN=... [more]
A0A067G4V8_CITSI3.020e-16465.50Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
V4UJL9_9ROSI5.868e-16464.75Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A067K215_JATCU4.073e-16165.13Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
B9SXP5_RICCO2.397e-15962.98Putative uncharacterized protein OS=Ricinus commun... [more]
F6HCG4_VITVI2.639e-15962.22Putative uncharacterized protein OS=Vitis vinifera... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0018389 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 63..83
NoneNo IPR availablePANTHERPTHR35834FAMILY NOT NAMEDcoord: 3..385
NoneNo IPR availablePANTHERPTHR35834:SF2SUBFAMILY NOT NAMEDcoord: 3..385
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 103..301
e-value: 4.4E-12
score: 44.5
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 17..301

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0018389 ID=g.arboreum_cottongen_reftransV1_0018389; Name=g.arboreum_cottongen_reftransV1_0018389; organism=Gossypium arboreum; type=contig; length=1230bp
CAAAACTTCAGCAATTATGGTAGCAGCCTCAGCATCATTAACAGATGCTT
CCCTAACTTTCTCCAGAATCTCTGGTTTAAAAGCCCTTTTCTCCCTTTTC
CTCAACCCTTCCCCAACCTCTAATTGCACTGCAAACCTTGCCACACAGCT
TGCAAATGGATGATTCTCTAAAAATTTCTTTTCTCTTTTCTTCCCCTCAC
TCACCTCATTCTCATTTCCATACTTTCCCATCCCTATCAAATCACCACCA
AATTCTGACCTCTGCAACTCCACAAGTTTTTCTATCAAACCCCCATTAAG
CATAGCTTCAACAGCTTCTTTACGTCCAAAGTAACCAATCTCAAGAATGC
AATTAAAGACCACCACTTTCATGCTCAAATCTTTGGATTCTAATAAAGTT
AAAATCTTGGGAAGTTCCCCATTACAGAGAATTACATCAACAAATGGAGA
TTTAATAAATGTAATCAACTCACATAGAACTTTTACGCTATGGGCTGATT
TCATCTCCAAAAGAGCTTGAATTGTATCTCCCATATTCACTTGGCCGACG
AAGACATCCTTGTTGAATCGAATCAAAGCGGCTACACAAAACGCAGCTTT
TTCCCTGATCTGTTTTGAACAATTCGGGTCGCAAAGCACTGTTTGTAAAA
CCGAAAAGGCTTTCGATTTCAAGACTGAATCCTGCAACTCGGGATTAAAC
CCTTGTGATACTCGGTGTTCAAACTGACTCAGTAACCGAGATAACTCGTC
CTCGTCCTTCCAGGGATCTTTCAAAGCATTTATCAAGCTATCGATACTCC
CACGATCCATCAAGGCTTGAATCTCGGACTCGATCGAGCCAGCAACTCGA
GAGATGGAATAAGTCGACACACGACGAGTCAAAAAACTCCTGAGACCATA
ACCACGATTCCTTTCTAGGGTTTCGACGAGGATCTTGAGCTCAGCCAAGT
GTCGGGAAAGAGTAGAAAGAAGTGGGTCTTTCGAGATGATCGAATCGGAC
TCGGTTTCAAGCTCGAGAAGAGCTTTAATTGGAGATGAGTTAGACTGAAC
CGATTTGTGAGTTGGATGAGCTTGTAACTCCTGGATTGCTTGTTTCAAAG
CTTCGAGAAGCTTCAGAACTCCAGGGTTGTCTTCTTTGGGCGATGAGTCT
TCCATTTTTTTGTTGCAGATGTAGATTTTCTTCTTTCACAGTTTACATAG
AAACAAACTACAATAGACTCTTGTTTTAGG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding