g.arboreum_cottongen_reftransV1_0014411, g.arboreum_cottongen_reftransV1_0014411 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0014411
Unique Nameg.arboreum_cottongen_reftransV1_0014411
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length324
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr13chromosomeg.arboreum_cottongen_reftransV1_0014411:1..324 .
Chr13:44370937..44371338 +
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0014411 vs. ExPASy TrEMBL
Match: A0A0D2P258_GOSRA (Pyruvate kinase OS=Gossypium raimondii GN=B456_007G031000 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.893e-55
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 3 
Query:   39 MAAITTILTDASAVATADLSSFRTISDHSLFDSVTNWTKRRLFTSKGDSSFPIRSMHNTQTGVASSTNGHFNADKLKSTVELLNGGALGQVKMNS 323
            MAAITTILTDASAVA ADLSSFRTISDHSLFDSVTNWTKRRLF+SKGDSSFPIRSMHNTQTGVASSTNGHFNADKLKSTVELLNGGALGQVKMNS
Sbjct:    1 MAAITTILTDASAVAPADLSSFRTISDHSLFDSVTNWTKRRLFSSKGDSSFPIRSMHNTQTGVASSTNGHFNADKLKSTVELLNGGALGQVKMNS 95
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014411 vs. ExPASy TrEMBL
Match: A0A0D2SD65_GOSRA (Pyruvate kinase OS=Gossypium raimondii GN=B456_007G031000 PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 6.369e-55
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 3 
Query:   39 MAAITTILTDASAVATADLSSFRTISDHSLFDSVTNWTKRRLFTSKGDSSFPIRSMHNTQTGVASSTNGHFNADKLKSTVELLNGGALGQVKMNS 323
            MAAITTILTDASAVA ADLSSFRTISDHSLFDSVTNWTKRRLF+SKGDSSFPIRSMHNTQTGVASSTNGHFNADKLKSTVELLNGGALGQVKMNS
Sbjct:    1 MAAITTILTDASAVAPADLSSFRTISDHSLFDSVTNWTKRRLFSSKGDSSFPIRSMHNTQTGVASSTNGHFNADKLKSTVELLNGGALGQVKMNS 95
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014411 vs. ExPASy TrEMBL
Match: A0A0D2T837_GOSRA (Pyruvate kinase OS=Gossypium raimondii GN=B456_007G031000 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.425e-54
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 3 
Query:   39 MAAITTILTDASAVATADLSSFRTISDHSLFDSVTNWTKRRLFTSKGDSSFPIRSMHNTQTGVASSTNGHFNADKLKSTVELLNGGALGQVKMNS 323
            MAAITTILTDASAVA ADLSSFRTISDHSLFDSVTNWTKRRLF+SKGDSSFPIRSMHNTQTGVASSTNGHFNADKLKSTVELLNGGALGQVKMNS
Sbjct:    1 MAAITTILTDASAVAPADLSSFRTISDHSLFDSVTNWTKRRLFSSKGDSSFPIRSMHNTQTGVASSTNGHFNADKLKSTVELLNGGALGQVKMNS 95
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014411 vs. ExPASy TrEMBL
Match: A0A061G3S1_THECC (Pyruvate kinase OS=Theobroma cacao GN=TCM_015766 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.976e-19
Identity = 59/97 (60.82%), Postives = 74/97 (76.29%), Query Frame = 3 
Query:   39 MAAITTILTDASAVATADLSSFRTISDHSLFDSVTNWTKRRLFTSKGDSSFPIRSMHNT--QTGVASSTNGHFNADKLKSTVELLNGGALGQVKMNS 323
            MA IT+ LTDA+++A AD+SSFR ++D+SLF+S  + TKRRLF  KGD++F IRSM  T  +TG  + +NG  NADKL  TVELL  GALGQVKMNS
Sbjct:    1 MATITS-LTDAASIAAADISSFRNVTDNSLFESGIHRTKRRLFFRKGDAAFSIRSMKITPARTGTLTCSNGRLNADKLNPTVELLKVGALGQVKMNS 96
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0014411 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 4
Match NameE-valueIdentityDescription
A0A0D2P258_GOSRA1.893e-5597.89Pyruvate kinase OS=Gossypium raimondii GN=B456_007... [more]
A0A0D2SD65_GOSRA6.369e-5597.89Pyruvate kinase OS=Gossypium raimondii GN=B456_007... [more]
A0A0D2T837_GOSRA1.425e-5497.89Pyruvate kinase OS=Gossypium raimondii GN=B456_007... [more]
A0A061G3S1_THECC8.976e-1960.82Pyruvate kinase OS=Theobroma cacao GN=TCM_015766 P... [more]
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BLAST of g.arboreum_cottongen_reftransV1_0014411 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSIGNALP_GRAM_POSITIVESignalP-TMSignalP-TMcoord: 1..21
score: 0.504

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0014411 ID=g.arboreum_cottongen_reftransV1_0014411; Name=g.arboreum_cottongen_reftransV1_0014411; organism=Gossypium arboreum; type=contig; length=324bp
AAAAAAATCTACCTCTGTTCTGTTCAGGAGTATTGGAAATGGCGGCGATT
ACTACCATCTTAACGGACGCTTCCGCCGTCGCCACCGCTGATTTGTCGTC
TTTCCGCACCATCTCCGACCATTCACTGTTCGATTCCGTAACCAATTGGA
CTAAACGACGTCTCTTTACCTCTAAAGGAGATTCATCTTTTCCAATCAGA
TCCATGCACAACACTCAAACCGGCGTCGCTTCTTCCACCAACGGCCATTT
CAACGCTGACAAGCTGAAATCCACTGTCGAGCTTTTAAACGGTGGGGCAT
TAGGACAAGTGAAAATGAACTCGA
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