g.arboreum_cottongen_reftransV1_0015740, g.arboreum_cottongen_reftransV1_0015740 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0015740
Unique Name	g.arboreum_cottongen_reftransV1_0015740
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	621

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr4	chromosome	g.arboreum_cottongen_reftransV1_0015740:1..621 . Chr4:25995040..25996030 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

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BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Match: A0A0D2SCT7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G136500 PE=4 SV=1)

HSP 1 Score: 430.254 bits (1105), Expect = 1.796e-143
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = -1

Query:    1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621
            LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL
Sbjct:  180 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 386

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BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Match: A0A061DXQ6_THECC (RAD3-like DNA-binding helicase protein isoform 2 OS=Theobroma cacao GN=TCM_004402 PE=4 SV=1)

HSP 1 Score: 418.698 bits (1075), Expect = 4.420e-140
Identity = 200/207 (96.62%), Postives = 204/207 (98.55%), Query Frame = -1

Query:    1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621
            LR FGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLR+EYNRLVEGLALRGNLPITD WLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRL+T+NVEKESPV FVASI+SHAGIDQKTLKFCYDRLHSLMLTL
Sbjct:  180 LRAFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRSEYNRLVEGLALRGNLPITDTWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETDNVEKESPVGFVASISSHAGIDQKTLKFCYDRLHSLMLTL 386

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BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Match: A0A061DQ17_THECC (RAD3-like DNA-binding helicase protein isoform 4 OS=Theobroma cacao GN=TCM_004402 PE=4 SV=1)

HSP 1 Score: 418.698 bits (1075), Expect = 5.844e-140
Identity = 200/207 (96.62%), Postives = 204/207 (98.55%), Query Frame = -1

Query:    1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621
            LR FGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLR+EYNRLVEGLALRGNLPITD WLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRL+T+NVEKESPV FVASI+SHAGIDQKTLKFCYDRLHSLMLTL
Sbjct:  180 LRAFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRSEYNRLVEGLALRGNLPITDTWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETDNVEKESPVGFVASISSHAGIDQKTLKFCYDRLHSLMLTL 386

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Match: A0A061DPQ8_THECC (RAD3-like DNA-binding helicase protein isoform 3 OS=Theobroma cacao GN=TCM_004402 PE=4 SV=1)

HSP 1 Score: 419.083 bits (1076), Expect = 3.903e-139
Identity = 200/207 (96.62%), Postives = 204/207 (98.55%), Query Frame = -1

Query:    1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621
            LR FGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLR+EYNRLVEGLALRGNLPITD WLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRL+T+NVEKESPV FVASI+SHAGIDQKTLKFCYDRLHSLMLTL
Sbjct:  180 LRAFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRSEYNRLVEGLALRGNLPITDTWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETDNVEKESPVGFVASISSHAGIDQKTLKFCYDRLHSLMLTL 386

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BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Match: A0A0D2RVH9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G081200 PE=4 SV=1)

HSP 1 Score: 417.542 bits (1072), Expect = 1.688e-138
Identity = 200/207 (96.62%), Postives = 202/207 (97.58%), Query Frame = -1

Query:    1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621
            LR FGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL+RISQEIDRFKATD S LRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYL GRLDTENVEKESPV FVASI+SHAGIDQKTLKFCYDRLHSLMLTL
Sbjct:  180 LRAFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRISQEIDRFKATDTSILRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLSGRLDTENVEKESPVGFVASISSHAGIDQKTLKFCYDRLHSLMLTL 386

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BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Match: A0A067FRJ6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004358mg PE=4 SV=1)

HSP 1 Score: 403.29 bits (1035), Expect = 9.284e-137
Identity = 191/207 (92.27%), Postives = 200/207 (96.62%), Query Frame = -1

Query:    1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621
            LR FGK++GWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL+RI+QEI+RFKATDA RLRAEYNRLVEGLALRGNLPI D WLSNPALP DILKEAVPGNIRRAEHFLHVLRRLVQYLRGRL+TENVEKE PVSFVASI +HAGIDQKTL+FCY+RLHSLMLTL
Sbjct:  180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTL 386

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BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Match: A0A067FMZ8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004358mg PE=4 SV=1)

HSP 1 Score: 402.905 bits (1034), Expect = 8.448e-135
Identity = 191/207 (92.27%), Postives = 200/207 (96.62%), Query Frame = -1

Query:    1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621
            LR FGK++GWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL+RI+QEI+RFKATDA RLRAEYNRLVEGLALRGNLPI D WLSNPALP DILKEAVPGNIRRAEHFLHVLRRLVQYLRGRL+TENVEKE PVSFVASI +HAGIDQKTL+FCY+RLHSLMLTL
Sbjct:  180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTL 386

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BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Match: V4VVL3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018975mg PE=4 SV=1)

HSP 1 Score: 402.905 bits (1034), Expect = 8.448e-135
Identity = 191/207 (92.27%), Postives = 200/207 (96.62%), Query Frame = -1

Query:    1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621
            LR FGK++GWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL+RI+QEI+RFKATDA RLRAEYNRLVEGLALRGNLPI D WLSNPALP DILKEAVPGNIRRAEHFLHVLRRLVQYLRGRL+TENVEKE PVSFVASI +HAGIDQKTL+FCY+RLHSLMLTL
Sbjct:  180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTL 386

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Match: A0A067FN33_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g004358mg PE=4 SV=1)

HSP 1 Score: 402.905 bits (1034), Expect = 2.018e-134
Identity = 191/207 (92.27%), Postives = 200/207 (96.62%), Query Frame = -1

Query:    1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621
            LR FGK++GWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL+RI+QEI+RFKATDA RLRAEYNRLVEGLALRGNLPI D WLSNPALP DILKEAVPGNIRRAEHFLHVLRRLVQYLRGRL+TENVEKE PVSFVASI +HAGIDQKTL+FCY+RLHSLMLTL
Sbjct:  180 LRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTL 386

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Match: A0A061DQV7_THECC (RAD3-like DNA-binding helicase protein isoform 1 OS=Theobroma cacao GN=TCM_004402 PE=4 SV=1)

HSP 1 Score: 405.986 bits (1042), Expect = 7.529e-134
Identity = 200/229 (87.34%), Postives = 204/229 (89.08%), Query Frame = -1

Query:    1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEID----------------------RFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621
            LR FGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEID                      RFKATDASRLR+EYNRLVEGLALRGNLPITD WLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRL+T+NVEKESPV FVASI+SHAGIDQKTLKFCYDRLHSLMLTL
Sbjct:  180 LRAFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDSRKNLFHKLGPKPTYAVGLFHGRFKATDASRLRSEYNRLVEGLALRGNLPITDTWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETDNVEKESPVGFVASISSHAGIDQKTLKFCYDRLHSLMLTL 408

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BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy Swiss-Prot
Match: ERCC2_ARATH (DNA repair helicase UVH6 OS=Arabidopsis thaliana GN=UVH6 PE=1 SV=1)

HSP 1 Score: 375.555 bits (963), Expect = 3.314e-124
Identity = 179/207 (86.47%), Postives = 191/207 (92.27%), Query Frame = -1

Query:    1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621
            LR FGK +GWCPYFLARHM+QFANV+VYSYQYLLDPKVAG ISKE+QKESVVVFDEAHNIDNVCIEALSVSVRR TLEGA RNLN+I QEIDRFKATDA RLRAEYNRLVEGLALRG+L   D WL+NPALP DILKEAVPGNIRRAEHF+HVLRRL+QYL  RLDTENVEKESPVSFV+S+NS AGI+QKTLKFCYDRL SLMLTL
Sbjct:  180 LRAFGKNRGWCPYFLARHMIQFANVIVYSYQYLLDPKVAGFISKELQKESVVVFDEAHNIDNVCIEALSVSVRRVTLEGANRNLNKIRQEIDRFKATDAGRLRAEYNRLVEGLALRGDLSGGDQWLANPALPHDILKEAVPGNIRRAEHFVHVLRRLLQYLGVRLDTENVEKESPVSFVSSLNSQAGIEQKTLKFCYDRLQSLMLTL 386

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy Swiss-Prot
Match: ERCC2_BOVIN (TFIIH basal transcription factor complex helicase XPD subunit OS=Bos taurus GN=ERCC2 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 2.504e-70
Identity = 111/207 (53.62%), Postives = 152/207 (73.43%), Query Frame = -1

Query:    1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621
            L+  G+ +GWCPYFLAR+ +  ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNIDNVCI+++SV++ R+TL+    NL  + + + R K TD  RLR EY RLVEGL        TD  L+NP LPD++LKEAVPG+IR AEHFL  LRRL++Y++ RL  ++V +ESP +F++ +     I +K L+FC +RL SL+ TL
Sbjct:  180 LKAVGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQANLETLQKTVLRIKETDEQRLREEYRRLVEGLREASAARETDAHLANPVLPDEVLKEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLYTL 386

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy Swiss-Prot
Match: ERCC2_CRIGR (TFIIH basal transcription factor complex helicase XPD subunit OS=Cricetulus griseus GN=ERCC2 PE=1 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 8.285e-70
Identity = 110/207 (53.14%), Postives = 153/207 (73.91%), Query Frame = -1

Query:    1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621
            L+  G+ +GWCPYFLAR+ +  ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNIDNVCI+++SV++ R+TL+    NL+ + + + R K TD  RLR EY RLVEGL        TD  L+NP LPD++L+EAVPG+IR AEHFL  LRRL++Y++ RL  ++V +ESP +F++ +     I +K L+FC +RL SL+ TL
Sbjct:  180 LKALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLHTL 386

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy Swiss-Prot
Match: ERCC2_MOUSE (TFIIH basal transcription factor complex helicase XPD subunit OS=Mus musculus GN=Ercc2 PE=2 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 1.312e-69
Identity = 110/207 (53.14%), Postives = 153/207 (73.91%), Query Frame = -1

Query:    1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621
            L+  G+ +GWCPYFLAR+ +  ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNIDNVCI+++SV++ R+TL+    NL+ + + + R K TD  RLR EY RLVEGL        TD  L+NP LPD++L+EAVPG+IR AEHFL  LRRL++Y++ RL  ++V +ESP +F++ +     I +K L+FC +RL SL+ TL
Sbjct:  180 LKALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDEYRRLVEGLREASVARETDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLHTL 386

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy Swiss-Prot
Match: ERCC2_HUMAN (TFIIH basal transcription factor complex helicase XPD subunit OS=Homo sapiens GN=ERCC2 PE=1 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 2.397e-69
Identity = 110/207 (53.14%), Postives = 152/207 (73.43%), Query Frame = -1

Query:    1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621
            L+  G+ +GWCPYFLAR+ +  ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNIDNVCI+++SV++ R+TL+    NL  + + + R K TD  RLR EY RLVEGL        TD  L+NP LPD++L+EAVPG+IR AEHFL  LRRL++Y++ RL  ++V +ESP +F++ +     I +K L+FC +RL SL+ TL
Sbjct:  180 LKALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLHTL 386

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy Swiss-Prot
Match: ERCC2_DICDI (TFIIH basal transcription factor complex helicase repD subunit OS=Dictyostelium discoideum GN=repD PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 3.114e-66
Identity = 102/207 (49.28%), Postives = 149/207 (71.98%), Query Frame = -1

Query:    1 LRVFGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 621
            L+ +G +   CPYFL+RHM+ FAN+V++SYQYLLDPK+A +IS      S+VVFDEAHNIDNVCI ALS+++  + L+ +++N+ +I+++I+  K  D  RL+ EY RLV GLA  G+    D   S+P LP+D+++EAVPGNIR+AEHF+ +LRR+V YL+ RL ++ +  ESP++F+  +     I  +TL+FC  RL SL+ TL
Sbjct:  174 LKEYGLKHQMCPYFLSRHMLNFANIVIFSYQYLLDPKIASLISSSFPSNSIVVFDEAHNIDNVCINALSINIDNKLLDTSSKNIAKINKQIEDIKKVDEKRLKDEYQRLVNGLARSGSTR-ADETTSDPVLPNDVIQEAVPGNIRKAEHFISLLRRVVDYLKSRLKSQMLLSESPLAFLQGLYHATQISSRTLRFCSSRLSSLLRTL 379

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy Swiss-Prot
Match: RAD15_SCHPO (DNA repair helicase rad15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rad15 PE=1 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 1.627e-61
Identity = 95/204 (46.57%), Postives = 142/204 (69.61%), Query Frame = -1

Query:    1 FGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDNWLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 612
            +G++   CPYF  R M+ F NV++YSY YLLDPK+A  +S+E+ K+ +VVFDEAHNIDNVCIE+LS+ +   +L  A++++  + Q+++  K +D+ +L+ EY +LV GL         D +++NP LP+D+LKEAVPGNIRRAEHF+  L+R V+YL+ R+   +V  E+P SF+  +     ID+K L+FC +RL SL+  L
Sbjct:  182 YGEKTTRCPYFTVRRMLPFCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNIDNVCIESLSIDLTESSLRKASKSILSLEQKVNEVKQSDSKKLQDEYQKLVRGLQDANAANDEDQFMANPVLPEDVLKEAVPGNIRRAEHFIAFLKRFVEYLKTRMKVLHVIAETPTSFLQHVKDITFIDKKPLRFCAERLTSLVRAL 385

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy Swiss-Prot
Match: RAD3_YEAST (DNA repair helicase RAD3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD3 PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.251e-56
Identity = 94/207 (45.41%), Postives = 137/207 (66.18%), Query Frame = -1

Query:    1 FGKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGLALRGNLPITDN---WLSNPALPDDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLDTENVEKESPVSFVASINSHAGIDQKTLKFCYDRLHSLMLTL 612
            + +EK  CPYF+ R M+   N+++YSY YLLDPK+A  +S E+ K+S+V+FDEAHNIDNVCIE+LS+ +    L  ATR  N + + I   +  D+ +L+ EY +LV+GL     L  TD    ++  P LP D+L EA+PGNIRRAEHF+  L+RL++YL+ R+   +V  E+P SF+  +     I++K L+FC +RL  L+ TL
Sbjct:  184 YCEEKTLCPYFIVRRMISLCNIIIYSYHYLLDPKIAERVSNEVSKDSIVIFDEAHNIDNVCIESLSLDLTTDALRRATRGANALDERISEVRKVDSQKLQDEYEKLVQGLHSADIL--TDQEEPFVETPVLPQDLLTEAIPGNIRRAEHFVSFLKRLIEYLKTRMKVLHVISETPKSFLQHLKQLTFIERKPLRFCSERLSLLVRTL 388

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy Swiss-Prot
Match: RTEL1_DANRE (Regulator of telomere elongation helicase 1 OS=Danio rerio GN=rtel1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.451e-12
Identity = 40/109 (36.70%), Postives = 65/109 (59.63%), Query Frame = -1

Query:  283 GKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEYNRLVEGL 609
            GK++  CPY+L+R + Q A+V+   Y YLLDPK     + E+ K +VV+FDEAHN++ +C E+ S  +    L  A   ++R+ +E    +A+D S+  +  +  VE L
Sbjct:  201 GKKQRVCPYYLSRSLKQHADVIFMPYNYLLDPKSRRAHNIEL-KGAVVIFDEAHNVEKMCEESTSFDLTPHDLISAIEAVDRLLRE----QASDISKADSAEDFNVESL 304

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy Swiss-Prot
Match: RTEL1_MUSSP (Regulator of telomere elongation helicase 1 OS=Mus spretus GN=Rtel1 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 4.414e-11
Identity = 34/102 (33.33%), Postives = 59/102 (57.84%), Query Frame = -1

Query:  304 GKEKGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLNRISQEIDRFKATDASRLRAEY 609
            G ++  CPY+L+R+M Q A+++   Y YLLD K     S ++ K +VV+FDEAHN++ +C E+ S  +  + +      +N++ +E  R   T    L+ E+
Sbjct:  201 GSKQKMCPYYLSRNMKQQADIIFMPYNYLLDAKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLEEQAR--VTQQGELQQEF 299

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2SCT7_GOSRA	1.796e-143	100.00	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061DXQ6_THECC	4.420e-140	96.62	RAD3-like DNA-binding helicase protein isoform 2 O...	[more]
A0A061DQ17_THECC	5.844e-140	96.62	RAD3-like DNA-binding helicase protein isoform 4 O...	[more]
A0A061DPQ8_THECC	3.903e-139	96.62	RAD3-like DNA-binding helicase protein isoform 3 O...	[more]
A0A0D2RVH9_GOSRA	1.688e-138	96.62	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A067FRJ6_CITSI	9.284e-137	92.27	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
A0A067FMZ8_CITSI	8.448e-135	92.27	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
V4VVL3_9ROSI	8.448e-135	92.27	Uncharacterized protein OS=Citrus clementina GN=CI...	[more]
A0A067FN33_CITSI	2.018e-134	92.27	Uncharacterized protein OS=Citrus sinensis GN=CISI...	[more]
A0A061DQV7_THECC	7.529e-134	87.34	RAD3-like DNA-binding helicase protein isoform 1 O...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0015740 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
ERCC2_ARATH	3.314e-124	86.47	DNA repair helicase UVH6 OS=Arabidopsis thaliana G...	[more]
ERCC2_BOVIN	2.504e-70	53.62	TFIIH basal transcription factor complex helicase ...	[more]
ERCC2_CRIGR	8.285e-70	53.14	TFIIH basal transcription factor complex helicase ...	[more]
ERCC2_MOUSE	1.312e-69	53.14	TFIIH basal transcription factor complex helicase ...	[more]
ERCC2_HUMAN	2.397e-69	53.14	TFIIH basal transcription factor complex helicase ...	[more]
ERCC2_DICDI	3.114e-66	49.28	TFIIH basal transcription factor complex helicase ...	[more]
RAD15_SCHPO	1.627e-61	46.57	DNA repair helicase rad15 OS=Schizosaccharomyces p...	[more]
RAD3_YEAST	1.251e-56	45.41	DNA repair helicase RAD3 OS=Saccharomyces cerevisi...	[more]
RTEL1_DANRE	2.451e-12	36.70	Regulator of telomere elongation helicase 1 OS=Dan...	[more]
RTEL1_MUSSP	4.414e-11	33.33	Regulator of telomere elongation helicase 1 OS=Mus...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 77..97
None	No IPR available	PANTHER	PTHR11472	DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER	coord: 1..207
None	No IPR available	PANTHER	PTHR11472:SF1	TFIIH BASAL TRANSCRIPTION FACTOR COMPLEX HELICASE XPD SUBUNIT	coord: 1..207
IPR001945	RAD3/XPD family	PRINTS	PR00852	XRODRMPGMNTD	coord: 154..175 score: 46.75 coord: 193..207 score: 37.27 coord: 94..113 score: 60.0 coord: 129..147 score: 70.68
IPR006554	Helicase-like, DEXD box c2 type	SMART	SM00488	deadxpd	coord: 1..101 e-value: 0.0047 score: -97.6
IPR010643	Helical and beta-bridge domain	PFAM	PF06777	HBB	coord: 91..207 e-value: 4.9E-22 score: 78.4
IPR010614	DEAD2	PFAM	PF06733	DEAD_2	coord: 4..77 e-value: 1.8E-27 score: 96.0
IPR002464	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	PROSITE	PS00690	DEAH_ATP_HELICASE	coord: 50..59
IPR014013	Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type	PROSITE	PS51193	HELICASE_ATP_BIND_2	coord: 1..106 score: 17.915

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0015740 ID=g.arboreum_cottongen_reftransV1_0015740; Name=g.arboreum_cottongen_reftransV1_0015740; organism=Gossypium arboreum; type=contig; length=621bp
TAGAGTCAACATGAGTGAATGCAGACGATCATAACAGAACTTCAATGTTT
TCTGGTCAATTCCAGCATGACTATTGATAGATGCAACAAAGCTAACTGGG
CTTTCTTTCTCAACATTCTCCGTGTCTAGTCGGCCCCTTAGATACTGAAC
TAATCTACGTAGGACATGCAAAAAGTGCTCCGCTCGACGGATATTTCCAG
GCACAGCTTCCTTTAGAATATCATCAGGCAGTGCAGGATTTGAAAGCCAG
TTGTCAGTGATAGGTAGGTTTCCTCTCAATGCCAAACCCTCTACAAGTCG
GTTGTATTCAGCACGAAGTCGGCTTGCATCAGTGGCCTTGAACCTATCAA
TCTCTTGACTTATCCTATTAAGATTCCTTGTAGCTCCTTCAAGTGTCTGT
CTCCTAACACTAACACTAAGTGCTTCAATACACACATTGTCAATATTATG
GGCCTCATCAAACACCACAACAGACTCCTTCTGCATTTCCTTTGATATGA
TCCCAGCCACCTTTGGATCAAGTAAATACTGATAACTATAAACGACCACA
TTAGCAAACTGTACCATATGTCTCGCCAAAAAATACGGACACCACCCTTT
CTCCTTCCCAAACACCCTCAA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR001945	RAD3/XPD
IPR006554	Helicase-like_DEXD_c2
IPR010643	HBB
IPR010614	RAD3-like_helicase_DEAD
IPR002464	DNA/RNA_helicase_DEAH_CS
IPR014013	Helic_SF1/SF2_ATP-bd_DinG/Rad3

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0004003	ATP-dependent DNA helicase activity
GO:0003677	DNA binding
GO:0005524	ATP binding
GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0008026	ATP-dependent helicase activity
GO:0003676	nucleic acid binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006289	nucleotide-excision repair

Search form

g.arboreum_cottongen_reftransV1_0015740, g.arboreum_cottongen_reftransV1_0015740 (contig) Gossypium arboreum

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