g.arboreum_cottongen_reftransV1_0001923, g.arboreum_cottongen_reftransV1_0001923 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0001923
Unique Name	g.arboreum_cottongen_reftransV1_0001923
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	749

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr3	chromosome	g.arboreum_cottongen_reftransV1_0001923:23..749 . Chr3:84857537..84860053 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

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BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: A0A0D2QZE7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G174000 PE=3 SV=1)

HSP 1 Score: 435.647 bits (1119), Expect = 8.173e-152
Identity = 206/208 (99.04%), Postives = 208/208 (100.00%), Query Frame = -2

Query:  125 DTHTKTKIETGNGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 748
            DTHTKTKIETGNGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYV+VR+HGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA
Sbjct:   50 DTHTKTKIETGNGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVVVRVHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 257

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BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: A0A0D2S1C5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G174000 PE=3 SV=1)

HSP 1 Score: 421.779 bits (1083), Expect = 2.350e-146
Identity = 202/208 (97.12%), Postives = 204/208 (98.08%), Query Frame = -2

Query:  125 DTHTKTKIETGNGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 748
            DTHTKTK    NGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYV+VR+HGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA
Sbjct:   50 DTHTKTK---RNGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVVVRVHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 254

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: A0A0B0NQK7_GOSAR (Putative tRNA (Cytidine(34)-2'-O)-methyltransferase OS=Gossypium arboreum GN=F383_16703 PE=3 SV=1)

HSP 1 Score: 406.371 bits (1043), Expect = 2.303e-140
Identity = 199/208 (95.67%), Postives = 199/208 (95.67%), Query Frame = -2

Query:  125 DTHTKTKIETGNGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 748
            DTHTKTK    NGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWP     IHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA
Sbjct:   50 DTHTKTK---RNGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWP-----IHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 249

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: A0A061DXE7_THECC (AGAMOUS-like 26 isoform 1 OS=Theobroma cacao GN=TCM_005921 PE=3 SV=1)

HSP 1 Score: 359.377 bits (921), Expect = 1.162e-121
Identity = 176/207 (85.02%), Postives = 184/207 (88.89%), Query Frame = -2

Query:  125 ETGNGNNSLP-------APDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 724
            ETGNGN SLP       +   Q KLLQVVLVSPQIPGN GCIARTCAASAV +HLVGPLGFKVDDTKLKRAGLDYWPYV+VR+H SW EFQ+YFKQQEG KRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPD+LLDCKSETFGGGTIRIPMV+TYVRCLNLSVSVGIA+YEASRQLNYEQLQ PS N  D EQS LTEDIFA
Sbjct:   61 ETGNGN-SLPGGIGKAVSQLSQNKLLQVVLVSPQIPGNVGCIARTCAASAVGVHLVGPLGFKVDDTKLKRAGLDYWPYVVVRVHHSWTEFQDYFKQQEGKKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDILLDCKSETFGGGTIRIPMVDTYVRCLNLSVSVGIALYEASRQLNYEQLQGPSGNCSDTEQSFLTEDIFA 266

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: A0A061DWH2_THECC (AGAMOUS-like 26 isoform 2 OS=Theobroma cacao GN=TCM_005921 PE=3 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 9.023e-112
Identity = 156/174 (89.66%), Postives = 163/174 (93.68%), Query Frame = -2

Query:  125 QIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 646
            QIPGN GCIARTCAASAV +HLVGPLGFKVDDTKLKRAGLDYWPYV+VR+H SW EFQ+YFKQQEG KRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPD+LLDCKSETFGGGTIRIPMV+TYVRCLNLSVSVGIA+YEASRQLNYEQLQ PS N  D EQS LTEDIFA
Sbjct:   21 QIPGNVGCIARTCAASAVGVHLVGPLGFKVDDTKLKRAGLDYWPYVVVRVHHSWTEFQDYFKQQEGKKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDILLDCKSETFGGGTIRIPMVDTYVRCLNLSVSVGIALYEASRQLNYEQLQGPSGNCSDTEQSFLTEDIFA 194

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: M5XKD6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010708mg PE=3 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 1.201e-111
Identity = 153/186 (82.26%), Postives = 171/186 (91.94%), Query Frame = -2

Query:  125 QQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 682
            + K+LQVVLVSPQIPGN GCIARTCAASAV LHLVGPLGFKVDD KLKRAGLDYWPYV+V++H SWAEFQ+YF+QQ+G+KRLLAFTKRGT+ HSDFSYR+GD+LIFGSET GLPP+VL DC SETFGGGTIRIPMVETYVRCLNLSVSVGIA+YEASRQL+YEQLQ P+ N  D EQS ++EDIFA
Sbjct:   54 RNKILQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFKVDDAKLKRAGLDYWPYVVVKVHSSWAEFQDYFRQQDGEKRLLAFTKRGTSFHSDFSYRRGDFLIFGSETSGLPPEVLQDCNSETFGGGTIRIPMVETYVRCLNLSVSVGIALYEASRQLSYEQLQFPNENCIDHEQSFVSEDIFA 239

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: A0A067L4Q0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16733 PE=3 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 3.086e-111
Identity = 160/207 (77.29%), Postives = 179/207 (86.47%), Query Frame = -2

Query:  125 ETGNGNNSLP-------APDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 724
            E GNGN SLP       +   + KLLQVVLVSPQIPGN GCIARTCAASAV LHLVGPLGF+VDDTKLKRAGLDYWPYV+V++H SWAEF++YF+QQEGDKRLLAFTKRG A HS+FSYRKGDYL+FGSET GLPP+ LLDC++E+ GGGTIRIPMVETYVRCLNLSVSVGIA+YEASRQLNYEQL+ PS    D E+S +TEDIFA
Sbjct:   57 ERGNGN-SLPHGIGEAVSEVSRNKLLQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKVHDSWAEFRDYFRQQEGDKRLLAFTKRGKATHSEFSYRKGDYLLFGSETRGLPPEALLDCENESIGGGTIRIPMVETYVRCLNLSVSVGIALYEASRQLNYEQLKFPSETCIDNEKSFITEDIFA 262

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: B9HNL8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s06890g PE=3 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 2.116e-109
Identity = 162/212 (76.42%), Postives = 178/212 (83.96%), Query Frame = -2

Query:  125 ETGNGN-NSLP--------APDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPS---TNSGDFEQSLLTEDIFA 724
            ++G GN NSLP             +KLLQVVLVSPQIPGN GCIARTCAA++V LHLVGPLGF+VDD KLKRAGLDYWPYV+V++H SWAEFQ+YF+QQEGDKRLLAFTKRGT  HS+FSYRKGDYL+FGSET GLPP+ LLDCKSE FGGG IRIPMVETYVRCLNLSVSVGIA+YEASRQLNYEQLQ PS    N G  EQS +TEDIFA
Sbjct:   55 QSGRGNGNSLPDGVGKGVNEVSRNKKLLQVVLVSPQIPGNTGCIARTCAATSVGLHLVGPLGFQVDDAKLKRAGLDYWPYVVVKVHDSWAEFQDYFRQQEGDKRLLAFTKRGTTTHSEFSYRKGDYLVFGSETSGLPPEALLDCKSEMFGGGMIRIPMVETYVRCLNLSVSVGIALYEASRQLNYEQLQFPSEDFVNGG--EQSFITEDIFA 264

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: B9RHG3_RICCO (23S rRNA methyltransferase, putative OS=Ricinus communis GN=RCOM_1525400 PE=3 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 5.756e-109
Identity = 152/186 (81.72%), Postives = 167/186 (89.78%), Query Frame = -2

Query:  125 QQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 682
            + KLLQVVLVSPQIPGN GCIARTCAASAV LHLVGPLGF+VD TKLKRAGLDYWPYV+V++H SW EFQ+YF+QQEGDKRLLAFTKRGTA HS+F YRKGDYLIFGSET GLPP+ L DCK+E FGGGTIRIPM+ETYVRCLNLSVSVGIA+YEASRQLNYEQL+ PS +  D EQS + EDIFA
Sbjct:   49 RNKLLQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDSTKLKRAGLDYWPYVVVKVHESWTEFQDYFRQQEGDKRLLAFTKRGTATHSEFLYRKGDYLIFGSETSGLPPEALQDCKNEPFGGGTIRIPMIETYVRCLNLSVSVGIALYEASRQLNYEQLKFPSESWTDNEQSFIIEDIFA 234

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: D7T2X8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0064g01270 PE=3 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 6.984e-109
Identity = 155/197 (78.68%), Postives = 168/197 (85.28%), Query Frame = -2

Query:  125 NGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 715
            NG     A     +LLQVVLVSPQIPGN G IARTCAASAV LHL+ PLGF+VDD KLKRAGLDYWPYV+V++H SWAEF+ YF+QQEG+KRLLAFTKRGT IHSDFSYRKGD+LIFGSETCGLPP+ LLDCKSE  GGGTIRIPMVETYVRCLNLSVSVGIA+YEASRQLNYEQLQ PS    D  +S LTEDIFA
Sbjct:   54 NGAGERVAEISNNRLLQVVLVSPQIPGNTGTIARTCAASAVGLHLIEPLGFQVDDAKLKRAGLDYWPYVVVKVHDSWAEFREYFRQQEGEKRLLAFTKRGTNIHSDFSYRKGDWLIFGSETCGLPPEALLDCKSEALGGGTIRIPMVETYVRCLNLSVSVGIALYEASRQLNYEQLQFPSDPPTDSSKSFLTEDIFA 250

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_SYNY3 (Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0992 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.948e-41
Identity = 77/157 (49.04%), Postives = 105/157 (66.88%), Query Frame = -2

Query:  203 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQL 673
            ++++VLV+PQIP N G IARTCAA+   LHLVGPLGF++ D  LKRAGLDYWPYV +  H S  EF  +++ Q G+  LL F+  GT    D++Y+  D+L+ GSET GL P ++ D  ++      + IPM  + VR LNL+ S  IA++EA RQL
Sbjct:    1 MVKLVLVNPQIPPNTGNIARTCAATGTELHLVGPLGFELGDRYLKRAGLDYWPYVDLHYHNSCEEFITHWRGQGGN--LLGFSVTGTVNFWDYTYQSTDWLMMGSETDGL-PQMMRDLSTQ-----LLCIPMPHSEVRSLNLASSAAIALFEAGRQL 149

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_BACSU (Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Bacillus subtilis (strain 168) GN=cspR PE=3 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 1.804e-37
Identity = 75/165 (45.45%), Postives = 93/165 (56.36%), Query Frame = -2

Query:  185 LQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGD---YLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQ 670
            L VVL  P+IP N G IARTCAA+   LHL+ PLGF  DD  LKRAGLDYW +V V  H S  E    +K+     +    TK G   H+ F Y   D   + +FG ET GLP D++ +          +R+PM E +VR LNLS +  I VYEA RQ NY  L+
Sbjct:    6 LHVVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVYHDSLEELFEAYKK----GKFFFITKFGQQPHTSFDYTDLDEDYFFVFGRETSGLPKDLIQNNMDR-----CLRLPMTE-HVRSLNLSNTAAILVYEALRQQNYRDLK 160

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_ECOLI (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Escherichia coli (strain K12) GN=trmL PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.246e-36
Identity = 72/159 (45.28%), Postives = 93/159 (58.49%), Query Frame = -2

Query:  197 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNY 673
            +L +VL  P+IP N G I R CA +   LH++ P+GF  DD +L+RAGLDY  +  V  H  +  F     + E  +RL A T +GT  HS  SY+ GDYL+FG ET GLP  +L    +E      IRIPMV    R +NLS +V + VYEA RQL Y
Sbjct:    1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHDYRAFL----EAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQ----KIRIPMVPD-SRSMNLSNAVSVVVYEAWRQLGY 150

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_ECOL6 (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=trmL PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.246e-36
Identity = 72/159 (45.28%), Postives = 93/159 (58.49%), Query Frame = -2

Query:  197 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNY 673
            +L +VL  P+IP N G I R CA +   LH++ P+GF  DD +L+RAGLDY  +  V  H  +  F     + E  +RL A T +GT  HS  SY+ GDYL+FG ET GLP  +L    +E      IRIPMV    R +NLS +V + VYEA RQL Y
Sbjct:    1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHDYRAFL----EAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQ----KIRIPMVPD-SRSMNLSNAVSVVVYEAWRQLGY 150

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_BURCM (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=trmL PE=3 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.832e-36
Identity = 68/160 (42.50%), Postives = 94/160 (58.75%), Query Frame = -2

Query:  194 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYE 673
            +  V+LV+P+IP N G + R CA +   LHL+ PLGF +DD K++RAGLDY  Y  +R+H  W  F     +     R+ AFT RG+    D ++  GD+ +FGSET GLP DVL    +E      +R+PM     R LNLS +V + V+EA RQ  +E
Sbjct:    1 MFNVILVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAEMRVHRDWDAFVA--AEAPDPARMFAFTTRGSGRFHDHAFVPGDWFVFGSETRGLPADVLERFPNEQ----RVRLPM-RPGNRSLNLSNTVAVVVFEAWRQAGFE 153

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_PHOAA (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) GN=trmL PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.783e-36
Identity = 73/160 (45.62%), Postives = 94/160 (58.75%), Query Frame = -2

Query:  197 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEF-QNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNY 673
            +L +VL  P+IP N G I R CA +   LHL+ PLGF  DD +L+RAGLDY  +  ++ H  +  F +N     E   RL A T +GT  HS  SY+ GDYL+FG ET GLP  VL +   +      IRIPM+    R +NLS SV + V+EA RQL Y
Sbjct:    1 MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIQPLGFTWDDKRLRRAGLDYHEFANIKQHHDYHSFLENEGVTGESFARLFALTTKGTPAHSAVSYQAGDYLMFGPETRGLPSYVLDNMPPQQ----KIRIPMLAD-SRSMNLSNSVAVVVFEAWRQLGY 155

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_HAEIN (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=trmL PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.043e-35
Identity = 69/160 (43.12%), Postives = 93/160 (58.13%), Query Frame = -2

Query:  194 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYE 673
            +L +VL  P+IP N G I R CA +   LHL+ PLGF  DD +L+R+GLDY  +  ++ H ++  F     + E  KRL A T +G   HS   ++ GDYL+FG ET G+P  +L +   E      IRIPM     R +NLS SV + VYEA RQL Y+
Sbjct:    1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKTFEAFL----ESEKPKRLFALTTKGCPAHSQVKFKLGDYLMFGPETRGIPMSILNEMPMEQ----KIRIPMTAN-SRSMNLSNSVAVTVYEAWRQLGYK 151

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_BURCH (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Burkholderia cenocepacia (strain HI2424) GN=trmL PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.862e-35
Identity = 66/160 (41.25%), Postives = 94/160 (58.75%), Query Frame = -2

Query:  194 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYE 673
            +  VVLV+P+IP N G + R CA +   LHL+ PLGF +DD +++RAGLDY  Y  +R+H  W  F     +     R+ AFT RG+    D ++  GD+ +FGSET GLP ++L    +E      +R+PM     R LNLS +V + V+EA RQ  +E
Sbjct:    1 MFNVVLVAPEIPPNTGNVIRLCANTGAHLHLIEPLGFPLDDARMRRAGLDYHEYAQMRVHRDWDAFVA--AETPDPARMFAFTTRGSGRFHDHAFLSGDWFVFGSETRGLPAELLERFPNEQ----RVRLPMRPDN-RSLNLSNTVAVVVFEAWRQAGFE 153

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_SACD2 (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=trmL PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 4.817e-35
Identity = 68/159 (42.77%), Postives = 97/159 (61.01%), Query Frame = -2

Query:  197 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNY 673
            +  +VL  P+IP N G I R CA +   LHL+ PLGF++DD +L+RAGLDY  +  V  H +W    + F +Q+  +RL A + +GT  H + S  +GDYL+FG ET GLP ++L   +  TF    +RIPM+    R +NLS +  + VYEA RQL +
Sbjct:    1 MFNIVLFEPEIPPNTGNIIRVCANTGCRLHLIEPLGFELDDKRLRRAGLDYGEWQSVVTHANW----DAFIKQQAPERLWALSTKGTKFHHEVSIGEGDYLVFGPETRGLPMEIL---EYITF-DNVLRIPMLPN-SRSMNLSNAASVMVYEAWRQLGF 150

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_GEOSE (Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Geobacillus stearothermophilus PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.411e-34
Identity = 71/164 (43.29%), Postives = 94/164 (57.32%), Query Frame = -2

Query:  188 LQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSY---RKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQL 670
            L VVL  P+IP N G IARTCAA+  ALHL+ PLGF  DD  L+RAGLDYW +V +  + S     ++F QQ  +      TK G   ++ + +    K  + IFG ET GLP ++L + +        +RIPM E  VR LNLS +  I VYEA RQ ++  L
Sbjct:    3 LHVVLFQPEIPANTGNIARTCAATNTALHLIRPLGFSTDDKMLRRAGLDYWEFVNIHYYDSL----DHFFQQNQNGDFYYITKFGKRYYTSYDFSDPSKEIFFIFGRETTGLPKELLAENEDR-----CLRIPMTEN-VRALNLSNTAAILVYEALRQQSFHGL 156

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2QZE7_GOSRA	8.173e-152	99.04	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2S1C5_GOSRA	2.350e-146	97.12	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B0NQK7_GOSAR	2.303e-140	95.67	Putative tRNA (Cytidine(34)-2'-O)-methyltransferas...	[more]
A0A061DXE7_THECC	1.162e-121	85.02	AGAMOUS-like 26 isoform 1 OS=Theobroma cacao GN=TC...	[more]
A0A061DWH2_THECC	9.023e-112	89.66	AGAMOUS-like 26 isoform 2 OS=Theobroma cacao GN=TC...	[more]
M5XKD6_PRUPE	1.201e-111	82.26	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
A0A067L4Q0_JATCU	3.086e-111	77.29	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
B9HNL8_POPTR	2.116e-109	76.42	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
B9RHG3_RICCO	5.756e-109	81.72	23S rRNA methyltransferase, putative OS=Ricinus co...	[more]
D7T2X8_VITVI	6.984e-109	78.68	Putative uncharacterized protein OS=Vitis vinifera...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
TRML_SYNY3	1.948e-41	49.04	Putative tRNA (cytidine(34)-2'-O)-methyltransferas...	[more]
TRML_BACSU	1.804e-37	45.45	Putative tRNA (cytidine(34)-2'-O)-methyltransferas...	[more]
TRML_ECOLI	1.246e-36	45.28	tRNA (cytidine(34)-2'-O)-methyltransferase OS=Esch...	[more]
TRML_ECOL6	1.246e-36	45.28	tRNA (cytidine(34)-2'-O)-methyltransferase OS=Esch...	[more]
TRML_BURCM	1.832e-36	42.50	tRNA (cytidine(34)-2'-O)-methyltransferase OS=Burk...	[more]
TRML_PHOAA	2.783e-36	45.63	tRNA (cytidine(34)-2'-O)-methyltransferase OS=Phot...	[more]
TRML_HAEIN	1.043e-35	43.13	tRNA (cytidine(34)-2'-O)-methyltransferase OS=Haem...	[more]
TRML_BURCH	1.862e-35	41.25	tRNA (cytidine(34)-2'-O)-methyltransferase OS=Burk...	[more]
TRML_SACD2	4.817e-35	42.77	tRNA (cytidine(34)-2'-O)-methyltransferase OS=Sacc...	[more]
TRML_GEOSE	1.411e-34	43.29	Putative tRNA (cytidine(34)-2'-O)-methyltransferas...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029026	tRNA (guanine-N1-)-methyltransferase, N-terminal	GENE3D	3.40.1280.10		coord: 7..174 e-value: 6.5E-58 score: 194.5
IPR016914	tRNA (cytidine/uridine-2'-O-)-methyltransferase	PIRSF	PIRSF029256	SpoU_TrmH	coord: 10..172 e-value: 4.2E-53 score: 176.8
IPR016914	tRNA (cytidine/uridine-2'-O-)-methyltransferase	HAMAP	MF_01885	tRNA_methyltr_TrmL	coord: 11..169 score: 31.033
IPR001537	tRNA/rRNA methyltransferase, SpoU type	PFAM	PF00588	SpoU_methylase	coord: 11..160 e-value: 2.5E-29 score: 102.1
None	No IPR available	PANTHER	PTHR12029	RNA METHYLTRANSFERASE	coord: 7..187
None	No IPR available	PANTHER	PTHR12029:SF31	TRNA (CYTIDINE(34)-2'-O)-METHYLTRANSFERASE	coord: 7..187
IPR029028	Alpha/beta knot methyltransferases	SUPERFAMILY	75217	alpha/beta knot	coord: 11..177

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0001923 ID=g.arboreum_cottongen_reftransV1_0001923; Name=g.arboreum_cottongen_reftransV1_0001923; organism=Gossypium arboreum; type=contig; length=749bp
GGTAACTTTAACCGTATCTGAAAAAAAAAGTGAAAAAAAAAAAAAAAAAC
TCTGTTTCATCCTCACTTTAAAAAATCTCTAACGATTGAGATTAAAAATT
GGCATGGATGGATGCAGCAAATCAAGCAAAAATATCCTCAGTAAGCAATG
ATTGTTCAAAATCACCAGAATTTGTAGAGGGCACTTGAAGCTGTTCATAG
TTGAGCTGTCTTGAAGCTTCATACACAGCAATACCAACACTCACAGAGAG
ATTCAGACATCTAACATAAGTCTCAACCATTGGAATCCGAATGGTTCCAC
CACCAAAAGTTTCACTTTTGCAATCTAACAACACATCAGGAGGCAGGCCA
CAAGTTTCTGAGCCGAATATCAAATAATCACCTTTTCTATACGAAAAGTC
TGAATGAATTGCTGTTCCTCTTTTAGTAAAAGCCAGCAAACGCTTATCCC
CTTCCTGTTGCTTGAAATAGTTTTGAAACTCCGCCCATGAGCCATGTATT
CTAACAATAACATATGGCCAGTAATCCAGTCCAGCACGTTTTAATTTAGT
ATCATCCACTTTAAATCCTAATGGCCCAACAAGGTGAAGGGCAACAGCTG
AGGCAGCGCATGTTCTTGCAATGCAACCTGCATTTCCAGGAATCTGAGGA
GAAACTAAGACGACTTGAAGCAATTTTTGTTGGGGGTCAGGGGCAGGCAG
AGAGTTGTTCCCATTTCCTGTTTCAATCTTAGTCTTAGTGTGAGTGTCA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR029026	tRNA_m1G_MTases_N
IPR016914	TrmL
IPR001537	SpoU_MeTrfase
IPR029028	Alpha/beta_knot_MTases

Vocabulary: **Biological Process**
Term	Definition
GO:0001510	RNA methylation
GO:0006396	RNA processing

Vocabulary: **Molecular Function**
Term	Definition
GO:0008168	methyltransferase activity
GO:0008173	RNA methyltransferase activity
GO:0003723	RNA binding

Search form

g.arboreum_cottongen_reftransV1_0001923, g.arboreum_cottongen_reftransV1_0001923 (contig) Gossypium arboreum

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