g.arboreum_cottongen_reftransV1_0009114, g.arboreum_cottongen_reftransV1_0009114 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0009114
Unique Name	g.arboreum_cottongen_reftransV1_0009114
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	446

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr4	chromosome	g.arboreum_cottongen_reftransV1_0009114:1..446 . Chr4:36687104..36687549 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: A0A0B0N7W1_GOSAR (Putative transporter MCH1 OS=Gossypium arboreum GN=F383_35950 PE=4 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 6.009e-43
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = -3

Query:    1 AALYTLIANAINPDDETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVCGRSWARRTVHTPAFCLEGPTXXXXXXXXXDQLHKELIGND 444
            AALYTLIANAINPDDETLYLFLNALVPLLASSLALVPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTGLYLLLLNSLSSKASRALILLGGALILLLLPLCLPGIVCGRSWARRTVHTPAFCLEGPTFSSFDPDDFDQLHKELIGND
Sbjct:  149 AALYTLIANAINPDDETLYLFLNALVPLLASSLALVPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTGLYLLLLNSLSSKASRALILLGGALILLLLPLCLPGIVCGRSWARRTVHTPAFCLEGPTFSSFDPDDFDQLHKELIGND 296

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: A0A0D2SJI4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G249600 PE=4 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 7.145e-42
Identity = 144/148 (97.30%), Postives = 145/148 (97.97%), Query Frame = -3

Query:    1 AALYTLIANAINPDDETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVCGRSWARRTVHTPAFCLEGPTXXXXXXXXXDQLHKELIGND 444
            AALYTLIANAINPDDETLYLFLNALVPLLASSLALVPILRQPPLQLLSTDTTS DSF+FFVLNVLAVFTGLYLLLLNSLSSKASRA ILLGGALILLLLPLCLPGIVCGRSWARRTVHTPAFCLEGPTFSS DPDDFDQLHKELIGND
Sbjct:  149 AALYTLIANAINPDDETLYLFLNALVPLLASSLALVPILRQPPLQLLSTDTTSWDSFVFFVLNVLAVFTGLYLLLLNSLSSKASRARILLGGALILLLLPLCLPGIVCGRSWARRTVHTPAFCLEGPTFSSLDPDDFDQLHKELIGND 296

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: A0A061EZW7_THECC (Major facilitator superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_025727 PE=4 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.653e-29
Identity = 118/148 (79.73%), Postives = 130/148 (87.84%), Query Frame = -3

Query:    1 AALYTLIANAINPDDETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVCGRSWARRTVHTPAFCLEGPTXXXXXXXXXDQLHKELIGND 444
            AALYTLIANAINPDD+TLYLFLNALVPLLASSLAL+PILRQPPLQLLSTD  S+DSFIF +LNVLAV TGLYLLLLNSLSS+ASRA ILL GALILLLLPLCLPGIVCGR+WAR  +HT +FCL+G T  S    D  +LHKEL+G+D
Sbjct:  149 AALYTLIANAINPDDDTLYLFLNALVPLLASSLALIPILRQPPLQLLSTDAVSQDSFIFIILNVLAVITGLYLLLLNSLSSEASRARILLVGALILLLLPLCLPGIVCGRNWARHNIHT-SFCLDGST-FSLVDPDDLELHKELLGSD 294

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: A0A061EZ33_THECC (Major facilitator superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_025727 PE=4 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.418e-29
Identity = 118/148 (79.73%), Postives = 130/148 (87.84%), Query Frame = -3

Query:    1 AALYTLIANAINPDDETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVCGRSWARRTVHTPAFCLEGPTXXXXXXXXXDQLHKELIGND 444
            AALYTLIANAINPDD+TLYLFLNALVPLLASSLAL+PILRQPPLQLLSTD  S+DSFIF +LNVLAV TGLYLLLLNSLSS+ASRA ILL GALILLLLPLCLPGIVCGR+WAR  +HT +FCL+G T  S    D  +LHKEL+G+D
Sbjct:  149 AALYTLIANAINPDDDTLYLFLNALVPLLASSLALIPILRQPPLQLLSTDAVSQDSFIFIILNVLAVITGLYLLLLNSLSSEASRARILLVGALILLLLPLCLPGIVCGRNWARHNIHT-SFCLDGST-FSLVDPDDLELHKELLGSD 294

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: A0A061F0Y7_THECC (Major facilitator superfamily protein isoform 3 (Fragment) OS=Theobroma cacao GN=TCM_025727 PE=4 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.598e-20
Identity = 104/134 (77.61%), Postives = 116/134 (86.57%), Query Frame = -3

Query:    1 DETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVCGRSWARRTVHTPAFCLEGPTXXXXXXXXXDQLHKELIGND 402
            D+TLYLFLNALVPLLASSLAL+PILRQPPLQLLSTD  S+DSFIF +LNVLAV TGLYLLLLNSLSS+ASRA ILL GALILLLLPLCLPGIVCGR+WAR  +HT +FCL+G T  S    D  +LHKEL+G+D
Sbjct:    1 DDTLYLFLNALVPLLASSLALIPILRQPPLQLLSTDAVSQDSFIFIILNVLAVITGLYLLLLNSLSSEASRARILLVGALILLLLPLCLPGIVCGRNWARHNIHT-SFCLDGST-FSLVDPDDLELHKELLGSD 132

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: M5X3K1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003313mg PE=4 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.437e-15
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = -3

Query:  235 AALYTLIANAINPDDETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTG 444
            AALYTLIANAINP+D+T+YLFLNALVPL  SS+AL+P+LRQPP+Q L  D T RDS IF  LN+LAV TG
Sbjct:  149 AALYTLIANAINPNDDTIYLFLNALVPLFTSSVALIPVLRQPPIQSLPADATRRDSIIFLCLNILAVITG 218

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: A0A0D2S5V4_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_004G254000 PE=4 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.373e-13
Identity = 100/148 (67.57%), Postives = 110/148 (74.32%), Query Frame = -3

Query:    1 AALYTLIANAINPDDETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVCGRSWARRTVHTPAFCLEGPTXXXXXXXXXDQLHKELIGND 444
            AALYTLIANAINP D+TLYLFLNALVPLLAS LAL+PI+RQ PLQ LST T ++D FIF VLNVLAV TGLYLLLLNSLSS+A RA  LL GALILL LPLCLPGIVC R+W  RT ++    L  P           +LH ELI  D
Sbjct:  237 AALYTLIANAINPKDDTLYLFLNALVPLLASCLALIPIIRQRPLQ-LSTYTINQDPFIFIVLNVLAVITGLYLLLLNSLSSEALRARTLLLGALILLFLPLCLPGIVCDRNWGFRT-NSSLVDLSDP-----------ELHTELIEKD 371

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: A0A0D2RAK7_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_004G254000 PE=4 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.736e-13
Identity = 100/148 (67.57%), Postives = 110/148 (74.32%), Query Frame = -3

Query:    1 AALYTLIANAINPDDETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVCGRSWARRTVHTPAFCLEGPTXXXXXXXXXDQLHKELIGND 444
            AALYTLIANAINP D+TLYLFLNALVPLLAS LAL+PI+RQ PLQ LST T ++D FIF VLNVLAV TGLYLLLLNSLSS+A RA  LL GALILL LPLCLPGIVC R+W  RT ++    L  P           +LH ELI  D
Sbjct:  237 AALYTLIANAINPKDDTLYLFLNALVPLLASCLALIPIIRQRPLQ-LSTYTINQDPFIFIVLNVLAVITGLYLLLLNSLSSEALRARTLLLGALILLFLPLCLPGIVCDRNWGFRT-NSSLVDLSDP-----------ELHTELIEKD 371

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: A0A0B0NZB4_GOSAR (Putative transporter MCH1 OS=Gossypium arboreum GN=F383_23995 PE=4 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.850e-13
Identity = 56/70 (80.00%), Postives = 61/70 (87.14%), Query Frame = -3

Query:  235 AALYTLIANAINPDDETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTG 444
            AALYTLIANAINP D+TLYLFLNALVPLLAS LAL+PI+RQ PLQ LST T ++D FIF VLNVLAV TG
Sbjct:   27 AALYTLIANAINPKDDTLYLFLNALVPLLASCLALIPIIRQRPLQ-LSTYTINQDPFIFIVLNVLAVITG 95

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: A0A067KTW8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02622 PE=4 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.487e-13
Identity = 80/119 (67.23%), Postives = 94/119 (78.99%), Query Frame = -3

Query:   88 AALYTLIANAINPDDETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVCGRSWARRTVHT 444
            AA+YTLIANAI+PD  ++YL LNA++PL  S LAL P+L QPP Q L T+   RDSFIF +LN+LA+ TGLYLLLLNSLSS A  A ILLGGA +LL LPLCLPGIVC R+WARR + T
Sbjct:  100 AAIYTLIANAIDPDANSIYLLLNAVLPLFVSGLALFPVLNQPPPQQLPTEANRRDSFIFLILNILAIITGLYLLLLNSLSSVAWTAGILLGGAFLLLALPLCLPGIVCARNWARRIIDT 218

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0N7W1_GOSAR	6.009e-43	100.00	Putative transporter MCH1 OS=Gossypium arboreum GN...	[more]
A0A0D2SJI4_GOSRA	7.145e-42	97.30	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061EZW7_THECC	5.653e-29	79.73	Major facilitator superfamily protein isoform 2 OS...	[more]
A0A061EZ33_THECC	7.418e-29	79.73	Major facilitator superfamily protein isoform 1 OS...	[more]
A0A061F0Y7_THECC	9.598e-20	77.61	Major facilitator superfamily protein isoform 3 (F...	[more]
M5X3K1_PRUPE	4.437e-15	72.86	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
A0A0D2S5V4_GOSRA	1.373e-13	67.57	Uncharacterized protein (Fragment) OS=Gossypium ra...	[more]
A0A0D2RAK7_GOSRA	1.736e-13	67.57	Uncharacterized protein (Fragment) OS=Gossypium ra...	[more]
A0A0B0NZB4_GOSAR	1.850e-13	80.00	Putative transporter MCH1 OS=Gossypium arboreum GN...	[more]
A0A067KTW8_JATCU	4.487e-13	67.23	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010658	Nodulin-like	PFAM	PF06813	Nodulin-like	coord: 2..99 e-value: 6.6E-13 score: 48.6
None	No IPR available	PANTHER	PTHR21576:SF7	MAJOR FACILITATOR PROTEIN-RELATED	coord: 1..136
None	No IPR available	PANTHER	PTHR21576	UNCHARACTERIZED NODULIN-LIKE PROTEIN	coord: 1..136
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 71..81
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 32..50
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..11
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 103..143
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 51..70
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..31
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 82..102
None	No IPR available	TMHMM	TMhelix		coord: 81..103
None	No IPR available	TMHMM	TMhelix		coord: 52..74
None	No IPR available	TMHMM	TMhelix		coord: 12..34

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0009114 ID=g.arboreum_cottongen_reftransV1_0009114; Name=g.arboreum_cottongen_reftransV1_0009114; organism=Gossypium arboreum; type=contig; length=446bp
GTCATTTCCAATCAATTCCTTATGGAGCTGATCAAAGTCATCAGGATCAA
ACGAGCTGAAGGTGGGGCCTTCAAGACAAAAGGCGGGGGTATGGACAGTA
CGACGAGCCCAGCTCCTGCCACATACAATGCCTGGTAAACACAAAGGTAG
GAGCAAAAGGATTAAGGCACCCCCTAGGAGAATGAGTGCCCTCGATGCCT
TAGATGAAAGTGAATTCAAAAGGAGAAGATATAGGCCGGTGAAAACAGCT
AAAACATTAAGGACAAAGAAAATAAAGGAATCCCGACTAGTAGTGTCCGT
GGACAGAAGTTGCAAAGGTGGTTGACGGAGGATGGGGACGAGAGCTAAGC
TGGAAGCAAGAAGAGGTACAAGTGCGTTTAAGAAGAGATAGAGGGTTTCA
TCATCGGGGTTTATTGCATTGGCAATCAGAGTGTAAAGTGCAGCAC

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR010658	Nodulin-like

Search form

g.arboreum_cottongen_reftransV1_0009114, g.arboreum_cottongen_reftransV1_0009114 (contig) Gossypium arboreum

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