g.arboreum_cottongen_reftransV1_0009878, g.arboreum_cottongen_reftransV1_0009878 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0009878
Unique Nameg.arboreum_cottongen_reftransV1_0009878
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1329
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr12chromosomeg.arboreum_cottongen_reftransV1_0009878:9..1329 .
Chr12:138584717..138586549 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: A0A0D2V0U0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G024100 PE=4 SV=1)

HSP 1 Score: 699.123 bits (1803), Expect = 0.000e+0
Identity = 358/359 (99.72%), Postives = 359/359 (100.00%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQGGSEYLLQ 1078
            MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVRLPRPLSRELPLRPYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTK+FLRVLLSTIEQGKEQGGSEYLLQ
Sbjct: 3123 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVRLPRPLSRELPLRPYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKHFLRVLLSTIEQGKEQGGSEYLLQ 3481          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: A0A0D2VUJ9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G024100 PE=4 SV=1)

HSP 1 Score: 698.738 bits (1802), Expect = 0.000e+0
Identity = 358/359 (99.72%), Postives = 359/359 (100.00%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQGGSEYLLQ 1078
            MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVRLPRPLSRELPLRPYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTK+FLRVLLSTIEQGKEQGGSEYLLQ
Sbjct: 3123 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVRLPRPLSRELPLRPYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKHFLRVLLSTIEQGKEQGGSEYLLQ 3481          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: A0A061DJI1_THECC (Vacuolar protein sorting-associated protein 13A, putative OS=Theobroma cacao GN=TCM_001701 PE=4 SV=1)

HSP 1 Score: 624.78 bits (1610), Expect = 0.000e+0
Identity = 323/359 (89.97%), Postives = 337/359 (93.87%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQGGSEYLLQ 1078
            MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFD+QAVARME+QLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTG+TAQSIRNRSR+Y MGSQ+ RVR PRPLSRELPLRPYSWEEAVGISVL EADDGKLKDEVYVM KAL+ PGK+VI+TERLVLVVNCPSLVD  KPEFRGVA + EWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQ QQ+SRK  GGGT+ RWNNPSTPLPLFQTNLE+ SE D ++FL VLLSTIEQGKE GG  YLL 
Sbjct: 3144 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDDQAVARMEKQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGRTAQSIRNRSRVYHMGSQQYRVRFPRPLSRELPLRPYSWEEAVGISVLTEADDGKLKDEVYVMCKALRKPGKFVIVTERLVLVVNCPSLVDFEKPEFRGVAVDPEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQKQQLSRK--GGGTRKRWNNPSTPLPLFQTNLEVASEGDAEDFLLVLLSTIEQGKEHGGRGYLLH 3500          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: A0A067EG91_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0000281mg PE=4 SV=1)

HSP 1 Score: 536.184 bits (1380), Expect = 3.552e-168
Identity = 280/361 (77.56%), Postives = 315/361 (87.26%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG-GSEYLLQ 1078
            MYKVFGSAGVIGNPMGFARSLG+GIRDFL+VPA+S+L+SPTGLI+GMA GTTSL+SNTVYALSDAATQFS AAHKGIVAFTFD+Q+VARME+Q KG ASHSKG+INEV EGLTGLLQSP+KEAEKHGLPG+LSGIA GVTGLV RPAASILEVTGKTAQSIRNRSRL++  SQR RVRLPRPLSRELPL PYSWEEA+G +VL E DDG K KDEV VM KALK  GK+ ++TERL+L+V+C SLVDLGKPEF+GVAA+ +WV+E+EISL S+IH D D+G VHIVGSSSD L RQNQ  S++G G  TK  WNNPSTPLPLFQTNLEL SEED K  + VLL TIE+GK +G GS YLL 
Sbjct: 2585 MYKVFGSAGVIGNPMGFARSLGLGIRDFLSVPARSMLQSPTGLISGMALGTTSLVSNTVYALSDAATQFSNAAHKGIVAFTFDDQSVARMEKQQKGVASHSKGVINEVLEGLTGLLQSPIKEAEKHGLPGLLSGIAFGVTGLVARPAASILEVTGKTAQSIRNRSRLHRTRSQRYRVRLPRPLSRELPLAPYSWEEAIGTTVLMEVDDGLKYKDEVPVMCKALKQAGKFAVITERLILIVSCSSLVDLGKPEFQGVAADPDWVVESEISLDSIIHADTDEGTVHIVGSSSDGLSRQNQHQSKRGSGTRTKW-WNNPSTPLPLFQTNLELTSEEDAKELVHVLLDTIERGKGRGWGSGYLLH 2944          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: A0A067E8M4_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0000281mg PE=4 SV=1)

HSP 1 Score: 536.184 bits (1380), Expect = 4.550e-168
Identity = 280/361 (77.56%), Postives = 315/361 (87.26%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG-GSEYLLQ 1078
            MYKVFGSAGVIGNPMGFARSLG+GIRDFL+VPA+S+L+SPTGLI+GMA GTTSL+SNTVYALSDAATQFS AAHKGIVAFTFD+Q+VARME+Q KG ASHSKG+INEV EGLTGLLQSP+KEAEKHGLPG+LSGIA GVTGLV RPAASILEVTGKTAQSIRNRSRL++  SQR RVRLPRPLSRELPL PYSWEEA+G +VL E DDG K KDEV VM KALK  GK+ ++TERL+L+V+C SLVDLGKPEF+GVAA+ +WV+E+EISL S+IH D D+G VHIVGSSSD L RQNQ  S++G G  TK  WNNPSTPLPLFQTNLEL SEED K  + VLL TIE+GK +G GS YLL 
Sbjct: 2663 MYKVFGSAGVIGNPMGFARSLGLGIRDFLSVPARSMLQSPTGLISGMALGTTSLVSNTVYALSDAATQFSNAAHKGIVAFTFDDQSVARMEKQQKGVASHSKGVINEVLEGLTGLLQSPIKEAEKHGLPGLLSGIAFGVTGLVARPAASILEVTGKTAQSIRNRSRLHRTRSQRYRVRLPRPLSRELPLAPYSWEEAIGTTVLMEVDDGLKYKDEVPVMCKALKQAGKFAVITERLILIVSCSSLVDLGKPEFQGVAADPDWVVESEISLDSIIHADTDEGTVHIVGSSSDGLSRQNQHQSKRGSGTRTKW-WNNPSTPLPLFQTNLELTSEEDAKELVHVLLDTIERGKGRGWGSGYLLH 3022          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: V4SQR3_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100108862mg PE=4 SV=1)

HSP 1 Score: 523.857 bits (1348), Expect = 8.004e-164
Identity = 270/347 (77.81%), Postives = 305/347 (87.90%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIE 1039
            MYKVFGSAGVIGNPMGFARSLG+GIRDFL+VPA+S+L+SPTGLI+GMA GTTSL+SNTVYALSDAATQFS AAHKGIVAFTFD+Q+VARME+Q KG ASHSKG+INE+ EGLTGLLQSP+KEAEKHGLPG+LSGIA GVTGLV RPAASILEVTGKTAQSIRNRSRL++  SQ+ RVRLPRPLSRELPL PYSWEEA+G +VL E DDG K KDEV VM KALK  GK+ ++TERL+L+V+C SLVDLGKPEF+GVAA+ +WV+E+EISL S+IH D D+G VHIVGSSSD L RQNQ  S++G G  TK  WNNPSTPLPLFQTNLEL SEED K  + VLL TIE
Sbjct: 2565 MYKVFGSAGVIGNPMGFARSLGLGIRDFLSVPARSMLQSPTGLISGMALGTTSLVSNTVYALSDAATQFSNAAHKGIVAFTFDDQSVARMEKQQKGVASHSKGVINEILEGLTGLLQSPIKEAEKHGLPGLLSGIAFGVTGLVARPAASILEVTGKTAQSIRNRSRLHRTRSQQYRVRLPRPLSRELPLAPYSWEEAIGTTVLMEVDDGLKYKDEVPVMCKALKQAGKFAVITERLILIVSCSSLVDLGKPEFQGVAADPDWVVESEISLDSIIHADTDEGTVHIVGSSSDGLSRQNQHQSKRGSGTRTKW-WNNPSTPLPLFQTNLELTSEEDAKELVHVLLDTIE 2910          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: M5XBH4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000018mg PE=4 SV=1)

HSP 1 Score: 509.99 bits (1312), Expect = 2.660e-159
Identity = 272/361 (75.35%), Postives = 306/361 (84.76%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG-GSEYLLQ 1078
            MYKVFGSAGVIGNPMGFARS+G+GIRDFL+VPA+SI  SPTGLITGMAQGTTSLLSNTVYA+SDAATQFSKAAHKGIVAFTFD+QAV+ +E+Q  G A+HSKG+IN VFEGLTGLLQSP+K AE+HGLPG+LSGIALG+TGLV +PAASILEVTGKTAQSIRNRSR YQMG QR RVRLPRPLSRELPLRPY+WEEAVG S L EADD  +LKDE+ VM K L+  GK+VI+T RLVL+V+C SL+DLGKPEFRGV A+ EWVIE+E+ L SVIH D D GVVHIVGSSS+  LRQNQQ  R  G G    RWNNP+  +PL QTNLEL  +ED +N L+ LLSTIE GKEQG G  YLL 
Sbjct: 2227 MYKVFGSAGVIGNPMGFARSMGLGIRDFLSVPARSIFLSPTGLITGMAQGTTSLLSNTVYAISDAATQFSKAAHKGIVAFTFDDQAVSGVEQQQIGVATHSKGVINGVFEGLTGLLQSPIKGAERHGLPGVLSGIALGITGLVAKPAASILEVTGKTAQSIRNRSRFYQMGQQRFRVRLPRPLSRELPLRPYTWEEAVGASALVEADDSFRLKDEILVMCKELRQAGKFVIITHRLVLIVSCSSLLDLGKPEFRGVPADLEWVIESEVRLESVIHADCDQGVVHIVGSSSNIPLRQNQQAKRSSGTGAG--RWNNPT--VPLIQTNLELAHQEDAENLLQNLLSTIELGKEQGWGCRYLLH 2583          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: A0A067KXR1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02743 PE=4 SV=1)

HSP 1 Score: 501.13 bits (1289), Expect = 5.907e-159
Identity = 273/362 (75.41%), Postives = 312/362 (86.19%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMR-WNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG-GSEYLLQ 1078
            MYKVF SAGVIGNPMGFARSLG+GIRDFL+VPA+S L+SPTGLITGMAQGT SLLSNTVYALSDA TQFSKAAHKGIVAFTFD+Q V+ M+RQ KG ASHSKG+INEV EGLTGLLQSP+KEAEKHGLPG+LSGIALGVT LV RPAASILE+TGKTAQSIRN+S+LYQ+GSQR R+R PRPLSRELPLRPYS EEAVG SVL EA+DG KLKDEV VM K+LK  GK+V++TERL+L++ CP LVD+GKPEFRGV  + EW IE+EI L SVIH D  +  VHIVGSSSDA LRQNQ  S+KGGGGGT+ + W++PST LPLFQTNLE  S +D ++ L+ +LSTIEQGK +G GS YL+ 
Sbjct: 1245 MYKVFVSAGVIGNPMGFARSLGLGIRDFLSVPARSFLQSPTGLITGMAQGTASLLSNTVYALSDATTQFSKAAHKGIVAFTFDDQFVSTMQRQQKGVASHSKGVINEVLEGLTGLLQSPIKEAEKHGLPGVLSGIALGVTRLVARPAASILEITGKTAQSIRNKSKLYQIGSQRRRIRFPRPLSRELPLRPYSLEEAVGTSVLMEAEDGLKLKDEVLVMCKSLKQAGKFVVVTERLMLIIKCPGLVDMGKPEFRGVPVDPEWFIESEIGLDSVIHADNVEAWVHIVGSSSDARLRQNQHQSKKGGGGGTRTKQWSDPSTRLPLFQTNLEFASTKDAEDLLQTMLSTIEQGKGRGWGSGYLVH 1606          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: W9QCI9_9ROSA (Putative vacuolar protein sorting-associated protein 13C OS=Morus notabilis GN=L484_010461 PE=4 SV=1)

HSP 1 Score: 508.064 bits (1307), Expect = 4.512e-158
Identity = 269/361 (74.52%), Postives = 304/361 (84.21%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG-GSEYLLQ 1078
            MYKVFGSAGVIGNPMGFAR+LG+GIRDFL+VPA++I +SPTGLITGMAQGTTSLL NTVYA+SDAATQFSKAAHKGIVAFTFD+QAV+ ME+   G ASHSKG+INEV EGLTGLLQSP+K AEKHGLPG+LSGIALGVTGLV +PAASIL+VTGKTAQSIRNRSRLYQM  QR RVR PRPLSRE PLRPYSWEEA+G SVL EA DG KLKDEV V  KALK  GK+V++TERL+L+V+C  LVDLGKPEFRG+ A+ EWV+E+EI L +V+H D+  GVVHIVGSSSD L RQNQ   R  GG GT +RWN+P+  LPL QTNLELE  ED +N L +L S IE+GK QG G  YLL 
Sbjct: 2947 MYKVFGSAGVIGNPMGFARTLGLGIRDFLSVPARTIFQSPTGLITGMAQGTTSLLRNTVYAVSDAATQFSKAAHKGIVAFTFDDQAVSGMEQLQTGVASHSKGVINEVLEGLTGLLQSPIKGAEKHGLPGVLSGIALGVTGLVAKPAASILQVTGKTAQSIRNRSRLYQMARQRFRVRFPRPLSREAPLRPYSWEEALGTSVLAEAGDGVKLKDEVLVACKALKQAGKFVVITERLILIVSCSRLVDLGKPEFRGIPADLEWVVESEIGLETVMHADSHQGVVHIVGSSSDTLSRQNQ---RAKGGSGTSVRWNSPT--LPLIQTNLELEHTEDAENLLEILSSAIERGKNQGWGRRYLLH 3302          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: K4D8I1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc11g045170.1 PE=4 SV=1)

HSP 1 Score: 476.478 bits (1225), Expect = 2.572e-157
Identity = 248/356 (69.66%), Postives = 296/356 (83.15%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRW-NNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQGGS 1063
            MYKVFGSAGVIGNPMGFARS+G+G++DFL+ P +S+ ++  GLI GMAQGT SLLSNTVYALSDAATQFSKAAHKGIVAFTFD+QAV  MER  KG ++HSKG+INE FEGLTGLLQSP+  AE+HGLPG+LSGIALGVTGLV RPAASIL++TGKTAQSIRNRS+L+ +GS R RVRLPR L+RELPLRPY WEEA+G+SVL+EA+D  KLK+E  V+ KAL++ GK+VI+TERL+L+V+CPSLV    PEF+GV A+ EW++ETEI + SVIH D D   VHIVGSSSDALLRQN  +S K   G    RW NNP T LPL QTNL   S+++ ++FLRVLLSTI++ KEQG S
Sbjct:  413 MYKVFGSAGVIGNPMGFARSMGLGLKDFLSAPVQSVFQTRAGLIKGMAQGTASLLSNTVYALSDAATQFSKAAHKGIVAFTFDDQAVGNMERHQKGISTHSKGVINEFFEGLTGLLQSPINGAERHGLPGVLSGIALGVTGLVARPAASILDITGKTAQSIRNRSKLHNLGSHRFRVRLPRHLNRELPLRPYCWEEAIGVSVLREAEDHVKLKEETLVVCKALRHDGKFVILTERLILIVSCPSLVKYRIPEFQGVPASPEWLVETEIGMDSVIHADNDYDEVHIVGSSSDALLRQN-HISHKRSWGPKGKRWNNNPRTSLPLLQTNLVFTSKDEAEDFLRVLLSTIDKAKEQGRS 767          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13A_DICDI (Putative vacuolar protein sorting-associated protein 13A OS=Dictyostelium discoideum GN=vps13A PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.426e-25
Identity = 76/247 (30.77%), Postives = 129/247 (52.23%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQL----------KGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVL 712
             Y + GS   +GNP+G  R+ G G+ DF   PA+ ++KSP     G+A+GT+S + N+V+   +  ++ +     G+   +FDE+ +   ER+L          +G A    G+   + +G+TG++  PV+ A+K G  G   G+A GV G+  +P  +++++  KT + I+N + L    SQ  RVR PR  S +  LRP+   E+ G  +LK A  GK   + Y+    +      +I   R++L
Sbjct: 3042 FYNILGSVDFLGNPVGLFRNFGTGVHDFFVEPAQGLVKSPADFTKGLAKGTSSFVKNSVFGTFNTLSKLTGTLGTGVATLSFDEKYL--QERKLHQARKPSHVGEGLAMGGIGLGRGILQGITGIVTKPVEGAKKGGFAGFAKGLAQGVVGVAVKPTTAVIDLATKTTEGIKNTTNL---QSQAERVRPPRCFSHDNVLRPFDEVESEGWFLLKTAHKGKHASDSYIWHHIINQECTIIISDHRIIL 3283          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13C_DICDI (Putative vacuolar protein sorting-associated protein 13C OS=Dictyostelium discoideum GN=tipC PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.078e-23
Identity = 74/255 (29.02%), Postives = 129/255 (50.59%), Query Frame = 2
Query:    5 YKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGII-----------NEVFEGLTGLLQSPVKEA-EKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSL 733
            +K+FGS   IGNP+  A SLG G +DF   PA  ++KSP     G+++GT+SL++N+V+  +D+ ++ +    KG+V  + D+  +   ERQ +      KG+              V +G+TG++  P K A ++    G   GI  GV G+  +P   + ++  KT++ I+N + + +  SQ  R R+PR   RE  L  Y+  +++G  +L          + YV    L      +I +   +L++ C +L
Sbjct: 3517 HKIFGSFDFIGNPIRLAESLGSGFKDFFHEPALGLVKSPQDFAAGLSKGTSSLINNSVFGFADSTSKITGTISKGLVQLSLDDSYIK--ERQ-ESNKQKPKGVKEGLEFGFRDFGEGVIKGITGIIDEPYKGATQEKSWEGFFKGIGKGVLGVAVKPTVGVFDLVSKTSEGIKNSTTVAKSLSQIKRRRIPRYFPREGTLSTYNQFKSIGSFILYSKIGPPPTHDWYVFHTILNYKDLILIGSNYHLLLIRCANL 3768          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13D_DICDI (Putative vacuolar protein sorting-associated protein 13D OS=Dictyostelium discoideum GN=vps13D PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.168e-21
Identity = 67/231 (29.00%), Postives = 122/231 (52.81%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASH-SKGII-------NEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQ----MGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKD-EVYVM 655
            +YKV GS+  IGNP+G    +G G++DF   PA  ++ SP     G+A+G+ SL+ N+VY L +  ++ S    KG+   +FD+Q +   +R  + +A H  +G++         V +G+TG++  P++ A K  + G   G+A GV G+  +P   + ++   T + IRN + L++    M   RC          +  L  Y++E++ G  +L+    G+ K+ + Y++
Sbjct: 4274 LYKVIGSSDNIGNPVGLFNHIGTGVKDFFYEPALGLITSPKDFGKGLAKGSISLVKNSVYGLFNTLSKLSNTVGKGVAILSFDDQYLRNRQRSRQKKAKHLGEGVVYGFKSLGKGVIDGVTGVVTKPIEGAIKGSIEGFAKGMAQGVVGVAVKPVVGVFDLVTMTTEGIRNTTNLFKDTTRMRPPRC-------FGTDNLLVEYNFEQSEGHYILETTFKGRFKNSDTYII 4497          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VPS13_YEAST (Vacuolar protein sorting-associated protein 13 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS13 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.030e-16
Identity = 66/235 (28.09%), Postives = 120/235 (51.06%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKS--PTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGI-VAFTFDEQAVARMERQLKGE-----ASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGK 682
            ++K+ GSA   GNP+G   ++  G+ D    P +  + +  P  +   +A+G  S    TV+ LSD+ ++F+ +  KG+ V    + Q V R+++++        A+ ++   + +  GL+G+   P K  +K G  G L G+  G+ GL  + A   L++T   +Q +++ + +  M  + CRVRLPR +  +  ++PY   EA G   LK  + G   ++ Y+    L  PGK
Sbjct: 2831 IHKILGSADCFGNPVGLFNTISSGVWDLFYEPYQGYMMNDRPQEIGIHLAKGGLSFAKKTVFGLSDSMSKFTGSMAKGLSVTQDLEFQRVRRLQQRINKNNRNALANSAQSFASTLGSGLSGIALDPYKAMQKEGAAGFLKGLGKGIVGLPTKTAIGFLDLTSNLSQGVKSTTTVLDM-QKGCRVRLPRYVDHDQIIKPYDLREAQGQYWLKTVNGGVFMNDEYLSHVIL--PGK 3062          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13E_DICDI (Putative vacuolar protein sorting-associated protein 13E OS=Dictyostelium discoideum GN=vps13E PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.409e-16
Identity = 46/177 (25.99%), Postives = 95/177 (53.67%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQ-LKGEASHS--KGII-------NEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRL 502
            +YK+ G+  + GNP+G   + G+G ++F     K ++ +         QG+ SL  ++VY + D+  + + +A K +   + D++ +  +ERQ + GE+ ++  +G+I         V+ G +G ++ P +  ++ G  G++ GI  G  GLV +P A+  +   K ++ I+N ++L
Sbjct: 3467 VYKILGAFNLFGNPVGLVTNFGIGFKEFFVSMGKGLVGN--SFTDSFGQGSKSLAKHSVYGIFDSGAKLTGSAGKVLSTLSMDQRYI--LERQYIIGESPNTFMQGLILGGRAAKTAVYRGFSGFVKLPYEGGKEAGPKGVVKGIGKGTAGLVLKPIAAGFDFASKVSEGIKNSTQL 3639          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13B_DICDI (Putative vacuolar protein sorting-associated protein 13B OS=Dictyostelium discoideum GN=vps13B PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.429e-14
Identity = 61/257 (23.74%), Postives = 124/257 (48.25%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASH--------SKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGK 748
            ++ + GS+ + G+P+ F  ++  G+ + +  P                 G+  L+   +YA ++++++       G   ++ DE  + R + + K +A H        SKG    + +G+ G+++ PV+ A + GL G   G   GV G+  +P   + +   KT++ IRN + ++    +R R+R PR ++   P++ YS +E+ G  +LK+  D   K E   +S  ++   K+ ++     L++   SL+ L K
Sbjct: 5731 IHVILGSSNIFGSPLVFFNNISTGMTEAIEDPI---------------MGSIQLMKRILYAAANSSSKLFGTISSGFATWSLDETYLRRRDAEEKVKAKHIAHGFYLGSKGFAMGIIDGVFGIVEHPVRGAMQEGLLGFFKGCGKGVLGIAVKPVTGVFDFASKTSEGIRNNTNIH---PERFRLRTPRFINPREPIKEYSVDESEGNFLLKKNSDDINKSEGNPLSSKMEY--KFHVVLPDCTLLLTSHSLICLSK 5967          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13A_MACFA (Vacuolar protein sorting-associated protein 13A (Fragment) OS=Macaca fascicularis GN=VPS13A PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.845e-14
Identity = 54/182 (29.67%), Postives = 88/182 (48.35%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVAR----MERQ----LKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQR 523
            MY +     V+GNP G  R    G+  F   P +  ++ P   + GMA G  +L+   V  L+ AA++ + A  KG+ A T DE    +    M +Q     +G     KG+++    G+TG++  P+K A+K G  G   G+  G+ G V RP   I+++   T Q I+  +   ++ S R
Sbjct:  382 MYVLILGLDVLGNPFGLIREFSEGVEAFFYEPYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITGAMAKGVAAMTMDEDYQQKRREAMNKQPAGFREGITRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKRATETSEVESLR 563          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13A_MOUSE (Vacuolar protein sorting-associated protein 13A OS=Mus musculus GN=Vps13a PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.299e-14
Identity = 54/182 (29.67%), Postives = 88/182 (48.35%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVAR----MERQ----LKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQR 523
            MY +     V+GNP G  R    G+  F   P +  ++ P   + GMA G  +L+   V  L+ AA++ + A  KG+ A T DE    +    M +Q     +G     KG+++    G+TG++  P+K A+K G  G   G+  G+ G V RP   I+++   T Q I+  +   ++ S R
Sbjct: 2848 MYVLILGLDVLGNPFGLIREFSEGVEAFFYEPYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITSAMAKGVAAMTMDEDYQQKRREAMNKQPAGLREGITRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVTRPTGGIIDMASSTFQGIKRATETSEVESLR 3029          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13A_HUMAN (Vacuolar protein sorting-associated protein 13A OS=Homo sapiens GN=VPS13A PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.244e-13
Identity = 54/182 (29.67%), Postives = 88/182 (48.35%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVAR----MERQ----LKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQR 523
            MY +     V+GNP G  R    G+  F   P +  ++ P   + GMA G  +L+   V  L+ AA++ + A  KG+ A T DE    +    M +Q     +G     KG+++    G+TG++  P+K A+K G  G   G+  G+ G V RP   I+++   T Q I+  +   ++ S R
Sbjct: 2856 MYVLILGLDVLGNPFGLIREFSEGVEAFFYEPYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITGAMAKGVAAMTMDEDYQQKRREAMNKQPAGFREGITRGGKGLVSGFVSGITGIVTKPIKGAQKGGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKRATETSEVESLR 3037          
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13C_HUMAN (Vacuolar protein sorting-associated protein 13C OS=Homo sapiens GN=VPS13C PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.787e-13
Identity = 71/248 (28.63%), Postives = 114/248 (45.97%), Query Frame = 2
Query:    2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGE--------ASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIM-TERLVLVV 718
            MY +     V+GNP G  R L  G+      P +  ++ P     G+  G  SL  +TV   +   ++ + +  KG+ A T D++   +   +L  +        A   KG +  V  G+TG++  PV+ A+K G  G   GI  G+ G V RP   I+++   T Q I+   R  +   +   +R PR +  +  +RPY  +E+ G S L E    KL+ E Y    A+    K ++M T R VL +
Sbjct: 3413 MYVLVLGLDVLGNPFGLIRGLSEGVEALFYEPFQGAVQGPEEFAEGLVIGVRSLFGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQQKRREELSRQPRDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAAGFFKGIGKGLVGAVARPTGGIVDMASSTFQGIQ---RAAESTEEVSSLRPPRLIHEDGIIRPYDRQESEG-SDLLENHIKKLEGETYRYHCAIPGSKKTILMVTNRRVLCI 3656          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2V0U0_GOSRA0.000e+099.72Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2VUJ9_GOSRA0.000e+099.72Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061DJI1_THECC0.000e+089.97Vacuolar protein sorting-associated protein 13A, p... [more]
A0A067EG91_CITSI3.552e-16877.56Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
A0A067E8M4_CITSI4.550e-16877.56Uncharacterized protein (Fragment) OS=Citrus sinen... [more]
V4SQR3_9ROSI8.004e-16477.81Uncharacterized protein (Fragment) OS=Citrus cleme... [more]
M5XBH4_PRUPE2.660e-15975.35Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A067KXR1_JATCU5.907e-15975.41Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
W9QCI9_9ROSA4.512e-15874.52Putative vacuolar protein sorting-associated prote... [more]
K4D8I1_SOLLC2.572e-15769.66Uncharacterized protein OS=Solanum lycopersicum GN... [more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
VP13A_DICDI1.426e-2530.77Putative vacuolar protein sorting-associated prote... [more]
VP13C_DICDI5.078e-2329.02Putative vacuolar protein sorting-associated prote... [more]
VP13D_DICDI1.168e-2129.00Putative vacuolar protein sorting-associated prote... [more]
VPS13_YEAST7.030e-1628.09Vacuolar protein sorting-associated protein 13 OS=... [more]
VP13E_DICDI7.409e-1625.99Putative vacuolar protein sorting-associated prote... [more]
VP13B_DICDI2.429e-1423.74Putative vacuolar protein sorting-associated prote... [more]
VP13A_MACFA2.845e-1429.67Vacuolar protein sorting-associated protein 13A (F... [more]
VP13A_MOUSE4.299e-1429.67Vacuolar protein sorting-associated protein 13A OS... [more]
VP13A_HUMAN1.244e-1329.67Vacuolar protein sorting-associated protein 13A OS... [more]
VP13C_HUMAN5.787e-1328.63Vacuolar protein sorting-associated protein 13C OS... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031645Vacuolar protein sorting-associated protein 13, C-terminalPFAMPF16909VPS13_Ccoord: 1..85
e-value: 2.0E-25
score: 89.4
IPR026847Vacuolar protein sorting-associated protein 13PANTHERPTHR16166VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13coord: 1..363
NoneNo IPR availablePANTHERPTHR16166:SF87SUBFAMILY NOT NAMEDcoord: 1..363

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0009878 ID=g.arboreum_cottongen_reftransV1_0009878; Name=g.arboreum_cottongen_reftransV1_0009878; organism=Gossypium arboreum; type=contig; length=1329bp
GATGTACAAGGTGTTTGGCTCTGCTGGTGTTATTGGCAATCCCATGGGAT
TTGCTAGGAGTCTAGGTGTAGGAATTAGAGATTTCTTAGCAGTTCCTGCA
AAGAGTATTTTGAAGAGTCCCACTGGACTTATCACAGGCATGGCTCAAGG
TACTACTAGTCTTCTGAGCAATACGGTCTATGCACTAAGTGATGCTGCCA
CTCAGTTCAGTAAAGCTGCACACAAGGGTATTGTTGCATTTACATTTGAT
GAGCAGGCTGTTGCAAGAATGGAAAGGCAATTGAAAGGGGAGGCTTCACA
CAGTAAAGGCATAATTAATGAAGTTTTTGAGGGACTTACTGGCCTCCTTC
AATCGCCAGTTAAAGAAGCAGAGAAACATGGCCTACCTGGAATCCTCTCA
GGAATAGCTTTGGGAGTAACAGGACTAGTGGGAAGACCAGCTGCTAGTAT
ACTTGAGGTTACTGGAAAAACTGCACAGAGTATTAGAAACAGAAGCAGAT
TATACCAAATGGGTTCGCAACGTTGTAGAGTTCGTTTGCCAAGGCCTTTA
AGCAGAGAACTTCCTTTGAGGCCTTACTCTTGGGAAGAAGCTGTTGGAAT
ATCGGTGCTTAAGGAAGCTGATGATGGCAAGCTCAAGGATGAAGTCTATG
TCATGTCCAAGGCACTTAAAAACCCCGGTAAATATGTCATCATGACAGAG
AGACTTGTGTTGGTTGTTAATTGCCCGAGTCTGGTGGACTTGGGGAAACC
TGAATTCCGAGGTGTTGCAGCTAATCAAGAGTGGGTGATAGAAACAGAAA
TTAGCCTGCATAGTGTAATCCACACTGATGCTGATGATGGTGTGGTACAT
ATTGTTGGAAGCAGTTCAGATGCATTGTTAAGACAGAATCAGCAGATGTC
GAGGAAGGGTGGTGGCGGTGGGACGAAGATGCGGTGGAATAATCCATCAA
CTCCGCTTCCACTTTTTCAGACCAACTTGGAACTGGAATCAGAAGAAGAC
ACAAAGAACTTTTTACGGGTTTTGCTTTCTACAATTGAACAGGGGAAAGA
GCAAGGGGGAAGTGAATATCTATTGCAGAGAAGTAGTATCAGGTAGATTT
CCTTTATTAGTTCCTTTTCTGTAAGCCTTTTTCACCCCAGTAAGAACAGG
AGAATATATATAATTAAAAACAAAGGTCCCTAACATATAGTTCACAAAAA
AAGAAAGAAAGAGAGGAAATAGCTAGATAAGAGTTGAGCTGGAAAGCATT
TGGTTTTTACTCTTGCATTTATTCATTCTCGTGTATAGTTTGTACAAAAT
TATATTTTACAACAGTAGATATATACAAA
back to top
Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR031645VPS13_DH-like
IPR026847VPS13