g.arboreum_cottongen_reftransV1_0009878, g.arboreum_cottongen_reftransV1_0009878 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: A0A0D2V0U0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G024100 PE=4 SV=1) HSP 1 Score: 699.123 bits (1803), Expect = 0.000e+0 Identity = 358/359 (99.72%), Postives = 359/359 (100.00%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQGGSEYLLQ 1078 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVRLPRPLSRELPLRPYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTK+FLRVLLSTIEQGKEQGGSEYLLQ Sbjct: 3123 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVRLPRPLSRELPLRPYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKHFLRVLLSTIEQGKEQGGSEYLLQ 3481
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: A0A0D2VUJ9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G024100 PE=4 SV=1) HSP 1 Score: 698.738 bits (1802), Expect = 0.000e+0 Identity = 358/359 (99.72%), Postives = 359/359 (100.00%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQGGSEYLLQ 1078 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVRLPRPLSRELPLRPYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTK+FLRVLLSTIEQGKEQGGSEYLLQ Sbjct: 3123 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVRLPRPLSRELPLRPYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKHFLRVLLSTIEQGKEQGGSEYLLQ 3481
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: A0A061DJI1_THECC (Vacuolar protein sorting-associated protein 13A, putative OS=Theobroma cacao GN=TCM_001701 PE=4 SV=1) HSP 1 Score: 624.78 bits (1610), Expect = 0.000e+0 Identity = 323/359 (89.97%), Postives = 337/359 (93.87%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQGGSEYLLQ 1078 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFD+QAVARME+QLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTG+TAQSIRNRSR+Y MGSQ+ RVR PRPLSRELPLRPYSWEEAVGISVL EADDGKLKDEVYVM KAL+ PGK+VI+TERLVLVVNCPSLVD KPEFRGVA + EWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQ QQ+SRK GGGT+ RWNNPSTPLPLFQTNLE+ SE D ++FL VLLSTIEQGKE GG YLL Sbjct: 3144 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDDQAVARMEKQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGRTAQSIRNRSRVYHMGSQQYRVRFPRPLSRELPLRPYSWEEAVGISVLTEADDGKLKDEVYVMCKALRKPGKFVIVTERLVLVVNCPSLVDFEKPEFRGVAVDPEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQKQQLSRK--GGGTRKRWNNPSTPLPLFQTNLEVASEGDAEDFLLVLLSTIEQGKEHGGRGYLLH 3500
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: A0A067EG91_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g0000281mg PE=4 SV=1) HSP 1 Score: 536.184 bits (1380), Expect = 3.552e-168 Identity = 280/361 (77.56%), Postives = 315/361 (87.26%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG-GSEYLLQ 1078 MYKVFGSAGVIGNPMGFARSLG+GIRDFL+VPA+S+L+SPTGLI+GMA GTTSL+SNTVYALSDAATQFS AAHKGIVAFTFD+Q+VARME+Q KG ASHSKG+INEV EGLTGLLQSP+KEAEKHGLPG+LSGIA GVTGLV RPAASILEVTGKTAQSIRNRSRL++ SQR RVRLPRPLSRELPL PYSWEEA+G +VL E DDG K KDEV VM KALK GK+ ++TERL+L+V+C SLVDLGKPEF+GVAA+ +WV+E+EISL S+IH D D+G VHIVGSSSD L RQNQ S++G G TK WNNPSTPLPLFQTNLEL SEED K + VLL TIE+GK +G GS YLL Sbjct: 2585 MYKVFGSAGVIGNPMGFARSLGLGIRDFLSVPARSMLQSPTGLISGMALGTTSLVSNTVYALSDAATQFSNAAHKGIVAFTFDDQSVARMEKQQKGVASHSKGVINEVLEGLTGLLQSPIKEAEKHGLPGLLSGIAFGVTGLVARPAASILEVTGKTAQSIRNRSRLHRTRSQRYRVRLPRPLSRELPLAPYSWEEAIGTTVLMEVDDGLKYKDEVPVMCKALKQAGKFAVITERLILIVSCSSLVDLGKPEFQGVAADPDWVVESEISLDSIIHADTDEGTVHIVGSSSDGLSRQNQHQSKRGSGTRTKW-WNNPSTPLPLFQTNLELTSEEDAKELVHVLLDTIERGKGRGWGSGYLLH 2944
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: A0A067E8M4_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0000281mg PE=4 SV=1) HSP 1 Score: 536.184 bits (1380), Expect = 4.550e-168 Identity = 280/361 (77.56%), Postives = 315/361 (87.26%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG-GSEYLLQ 1078 MYKVFGSAGVIGNPMGFARSLG+GIRDFL+VPA+S+L+SPTGLI+GMA GTTSL+SNTVYALSDAATQFS AAHKGIVAFTFD+Q+VARME+Q KG ASHSKG+INEV EGLTGLLQSP+KEAEKHGLPG+LSGIA GVTGLV RPAASILEVTGKTAQSIRNRSRL++ SQR RVRLPRPLSRELPL PYSWEEA+G +VL E DDG K KDEV VM KALK GK+ ++TERL+L+V+C SLVDLGKPEF+GVAA+ +WV+E+EISL S+IH D D+G VHIVGSSSD L RQNQ S++G G TK WNNPSTPLPLFQTNLEL SEED K + VLL TIE+GK +G GS YLL Sbjct: 2663 MYKVFGSAGVIGNPMGFARSLGLGIRDFLSVPARSMLQSPTGLISGMALGTTSLVSNTVYALSDAATQFSNAAHKGIVAFTFDDQSVARMEKQQKGVASHSKGVINEVLEGLTGLLQSPIKEAEKHGLPGLLSGIAFGVTGLVARPAASILEVTGKTAQSIRNRSRLHRTRSQRYRVRLPRPLSRELPLAPYSWEEAIGTTVLMEVDDGLKYKDEVPVMCKALKQAGKFAVITERLILIVSCSSLVDLGKPEFQGVAADPDWVVESEISLDSIIHADTDEGTVHIVGSSSDGLSRQNQHQSKRGSGTRTKW-WNNPSTPLPLFQTNLELTSEEDAKELVHVLLDTIERGKGRGWGSGYLLH 3022
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: V4SQR3_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100108862mg PE=4 SV=1) HSP 1 Score: 523.857 bits (1348), Expect = 8.004e-164 Identity = 270/347 (77.81%), Postives = 305/347 (87.90%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIE 1039 MYKVFGSAGVIGNPMGFARSLG+GIRDFL+VPA+S+L+SPTGLI+GMA GTTSL+SNTVYALSDAATQFS AAHKGIVAFTFD+Q+VARME+Q KG ASHSKG+INE+ EGLTGLLQSP+KEAEKHGLPG+LSGIA GVTGLV RPAASILEVTGKTAQSIRNRSRL++ SQ+ RVRLPRPLSRELPL PYSWEEA+G +VL E DDG K KDEV VM KALK GK+ ++TERL+L+V+C SLVDLGKPEF+GVAA+ +WV+E+EISL S+IH D D+G VHIVGSSSD L RQNQ S++G G TK WNNPSTPLPLFQTNLEL SEED K + VLL TIE Sbjct: 2565 MYKVFGSAGVIGNPMGFARSLGLGIRDFLSVPARSMLQSPTGLISGMALGTTSLVSNTVYALSDAATQFSNAAHKGIVAFTFDDQSVARMEKQQKGVASHSKGVINEILEGLTGLLQSPIKEAEKHGLPGLLSGIAFGVTGLVARPAASILEVTGKTAQSIRNRSRLHRTRSQQYRVRLPRPLSRELPLAPYSWEEAIGTTVLMEVDDGLKYKDEVPVMCKALKQAGKFAVITERLILIVSCSSLVDLGKPEFQGVAADPDWVVESEISLDSIIHADTDEGTVHIVGSSSDGLSRQNQHQSKRGSGTRTKW-WNNPSTPLPLFQTNLELTSEEDAKELVHVLLDTIE 2910
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: M5XBH4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000018mg PE=4 SV=1) HSP 1 Score: 509.99 bits (1312), Expect = 2.660e-159 Identity = 272/361 (75.35%), Postives = 306/361 (84.76%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG-GSEYLLQ 1078 MYKVFGSAGVIGNPMGFARS+G+GIRDFL+VPA+SI SPTGLITGMAQGTTSLLSNTVYA+SDAATQFSKAAHKGIVAFTFD+QAV+ +E+Q G A+HSKG+IN VFEGLTGLLQSP+K AE+HGLPG+LSGIALG+TGLV +PAASILEVTGKTAQSIRNRSR YQMG QR RVRLPRPLSRELPLRPY+WEEAVG S L EADD +LKDE+ VM K L+ GK+VI+T RLVL+V+C SL+DLGKPEFRGV A+ EWVIE+E+ L SVIH D D GVVHIVGSSS+ LRQNQQ R G G RWNNP+ +PL QTNLEL +ED +N L+ LLSTIE GKEQG G YLL Sbjct: 2227 MYKVFGSAGVIGNPMGFARSMGLGIRDFLSVPARSIFLSPTGLITGMAQGTTSLLSNTVYAISDAATQFSKAAHKGIVAFTFDDQAVSGVEQQQIGVATHSKGVINGVFEGLTGLLQSPIKGAERHGLPGVLSGIALGITGLVAKPAASILEVTGKTAQSIRNRSRFYQMGQQRFRVRLPRPLSRELPLRPYTWEEAVGASALVEADDSFRLKDEILVMCKELRQAGKFVIITHRLVLIVSCSSLLDLGKPEFRGVPADLEWVIESEVRLESVIHADCDQGVVHIVGSSSNIPLRQNQQAKRSSGTGAG--RWNNPT--VPLIQTNLELAHQEDAENLLQNLLSTIELGKEQGWGCRYLLH 2583
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: A0A067KXR1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02743 PE=4 SV=1) HSP 1 Score: 501.13 bits (1289), Expect = 5.907e-159 Identity = 273/362 (75.41%), Postives = 312/362 (86.19%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMR-WNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG-GSEYLLQ 1078 MYKVF SAGVIGNPMGFARSLG+GIRDFL+VPA+S L+SPTGLITGMAQGT SLLSNTVYALSDA TQFSKAAHKGIVAFTFD+Q V+ M+RQ KG ASHSKG+INEV EGLTGLLQSP+KEAEKHGLPG+LSGIALGVT LV RPAASILE+TGKTAQSIRN+S+LYQ+GSQR R+R PRPLSRELPLRPYS EEAVG SVL EA+DG KLKDEV VM K+LK GK+V++TERL+L++ CP LVD+GKPEFRGV + EW IE+EI L SVIH D + VHIVGSSSDA LRQNQ S+KGGGGGT+ + W++PST LPLFQTNLE S +D ++ L+ +LSTIEQGK +G GS YL+ Sbjct: 1245 MYKVFVSAGVIGNPMGFARSLGLGIRDFLSVPARSFLQSPTGLITGMAQGTASLLSNTVYALSDATTQFSKAAHKGIVAFTFDDQFVSTMQRQQKGVASHSKGVINEVLEGLTGLLQSPIKEAEKHGLPGVLSGIALGVTRLVARPAASILEITGKTAQSIRNKSKLYQIGSQRRRIRFPRPLSRELPLRPYSLEEAVGTSVLMEAEDGLKLKDEVLVMCKSLKQAGKFVVVTERLMLIIKCPGLVDMGKPEFRGVPVDPEWFIESEIGLDSVIHADNVEAWVHIVGSSSDARLRQNQHQSKKGGGGGTRTKQWSDPSTRLPLFQTNLEFASTKDAEDLLQTMLSTIEQGKGRGWGSGYLVH 1606
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: W9QCI9_9ROSA (Putative vacuolar protein sorting-associated protein 13C OS=Morus notabilis GN=L484_010461 PE=4 SV=1) HSP 1 Score: 508.064 bits (1307), Expect = 4.512e-158 Identity = 269/361 (74.52%), Postives = 304/361 (84.21%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRWNNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQG-GSEYLLQ 1078 MYKVFGSAGVIGNPMGFAR+LG+GIRDFL+VPA++I +SPTGLITGMAQGTTSLL NTVYA+SDAATQFSKAAHKGIVAFTFD+QAV+ ME+ G ASHSKG+INEV EGLTGLLQSP+K AEKHGLPG+LSGIALGVTGLV +PAASIL+VTGKTAQSIRNRSRLYQM QR RVR PRPLSRE PLRPYSWEEA+G SVL EA DG KLKDEV V KALK GK+V++TERL+L+V+C LVDLGKPEFRG+ A+ EWV+E+EI L +V+H D+ GVVHIVGSSSD L RQNQ R GG GT +RWN+P+ LPL QTNLELE ED +N L +L S IE+GK QG G YLL Sbjct: 2947 MYKVFGSAGVIGNPMGFARTLGLGIRDFLSVPARTIFQSPTGLITGMAQGTTSLLRNTVYAVSDAATQFSKAAHKGIVAFTFDDQAVSGMEQLQTGVASHSKGVINEVLEGLTGLLQSPIKGAEKHGLPGVLSGIALGVTGLVAKPAASILQVTGKTAQSIRNRSRLYQMARQRFRVRFPRPLSREAPLRPYSWEEALGTSVLAEAGDGVKLKDEVLVACKALKQAGKFVVITERLILIVSCSRLVDLGKPEFRGIPADLEWVVESEIGLETVMHADSHQGVVHIVGSSSDTLSRQNQ---RAKGGSGTSVRWNSPT--LPLIQTNLELEHTEDAENLLEILSSAIERGKNQGWGRRYLLH 3302
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Match: K4D8I1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc11g045170.1 PE=4 SV=1) HSP 1 Score: 476.478 bits (1225), Expect = 2.572e-157 Identity = 248/356 (69.66%), Postives = 296/356 (83.15%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDG-KLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGKPEFRGVAANQEWVIETEISLHSVIHTDADDGVVHIVGSSSDALLRQNQQMSRKGGGGGTKMRW-NNPSTPLPLFQTNLELESEEDTKNFLRVLLSTIEQGKEQGGS 1063 MYKVFGSAGVIGNPMGFARS+G+G++DFL+ P +S+ ++ GLI GMAQGT SLLSNTVYALSDAATQFSKAAHKGIVAFTFD+QAV MER KG ++HSKG+INE FEGLTGLLQSP+ AE+HGLPG+LSGIALGVTGLV RPAASIL++TGKTAQSIRNRS+L+ +GS R RVRLPR L+RELPLRPY WEEA+G+SVL+EA+D KLK+E V+ KAL++ GK+VI+TERL+L+V+CPSLV PEF+GV A+ EW++ETEI + SVIH D D VHIVGSSSDALLRQN +S K G RW NNP T LPL QTNL S+++ ++FLRVLLSTI++ KEQG S Sbjct: 413 MYKVFGSAGVIGNPMGFARSMGLGLKDFLSAPVQSVFQTRAGLIKGMAQGTASLLSNTVYALSDAATQFSKAAHKGIVAFTFDDQAVGNMERHQKGISTHSKGVINEFFEGLTGLLQSPINGAERHGLPGVLSGIALGVTGLVARPAASILDITGKTAQSIRNRSKLHNLGSHRFRVRLPRHLNRELPLRPYCWEEAIGVSVLREAEDHVKLKEETLVVCKALRHDGKFVILTERLILIVSCPSLVKYRIPEFQGVPASPEWLVETEIGMDSVIHADNDYDEVHIVGSSSDALLRQN-HISHKRSWGPKGKRWNNNPRTSLPLLQTNLVFTSKDEAEDFLRVLLSTIDKAKEQGRS 767
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13A_DICDI (Putative vacuolar protein sorting-associated protein 13A OS=Dictyostelium discoideum GN=vps13A PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.426e-25 Identity = 76/247 (30.77%), Postives = 129/247 (52.23%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQL----------KGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVL 712 Y + GS +GNP+G R+ G G+ DF PA+ ++KSP G+A+GT+S + N+V+ + ++ + G+ +FDE+ + ER+L +G A G+ + +G+TG++ PV+ A+K G G G+A GV G+ +P +++++ KT + I+N + L SQ RVR PR S + LRP+ E+ G +LK A GK + Y+ + +I R++L Sbjct: 3042 FYNILGSVDFLGNPVGLFRNFGTGVHDFFVEPAQGLVKSPADFTKGLAKGTSSFVKNSVFGTFNTLSKLTGTLGTGVATLSFDEKYL--QERKLHQARKPSHVGEGLAMGGIGLGRGILQGITGIVTKPVEGAKKGGFAGFAKGLAQGVVGVAVKPTTAVIDLATKTTEGIKNTTNL---QSQAERVRPPRCFSHDNVLRPFDEVESEGWFLLKTAHKGKHASDSYIWHHIINQECTIIISDHRIIL 3283
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13C_DICDI (Putative vacuolar protein sorting-associated protein 13C OS=Dictyostelium discoideum GN=tipC PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 5.078e-23 Identity = 74/255 (29.02%), Postives = 129/255 (50.59%), Query Frame = 2 Query: 5 YKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASHSKGII-----------NEVFEGLTGLLQSPVKEA-EKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSL 733 +K+FGS IGNP+ A SLG G +DF PA ++KSP G+++GT+SL++N+V+ +D+ ++ + KG+V + D+ + ERQ + KG+ V +G+TG++ P K A ++ G GI GV G+ +P + ++ KT++ I+N + + + SQ R R+PR RE L Y+ +++G +L + YV L +I + +L++ C +L Sbjct: 3517 HKIFGSFDFIGNPIRLAESLGSGFKDFFHEPALGLVKSPQDFAAGLSKGTSSLINNSVFGFADSTSKITGTISKGLVQLSLDDSYIK--ERQ-ESNKQKPKGVKEGLEFGFRDFGEGVIKGITGIIDEPYKGATQEKSWEGFFKGIGKGVLGVAVKPTVGVFDLVSKTSEGIKNSTTVAKSLSQIKRRRIPRYFPREGTLSTYNQFKSIGSFILYSKIGPPPTHDWYVFHTILNYKDLILIGSNYHLLLIRCANL 3768
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13D_DICDI (Putative vacuolar protein sorting-associated protein 13D OS=Dictyostelium discoideum GN=vps13D PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 1.168e-21 Identity = 67/231 (29.00%), Postives = 122/231 (52.81%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASH-SKGII-------NEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQ----MGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKD-EVYVM 655 +YKV GS+ IGNP+G +G G++DF PA ++ SP G+A+G+ SL+ N+VY L + ++ S KG+ +FD+Q + +R + +A H +G++ V +G+TG++ P++ A K + G G+A GV G+ +P + ++ T + IRN + L++ M RC + L Y++E++ G +L+ G+ K+ + Y++ Sbjct: 4274 LYKVIGSSDNIGNPVGLFNHIGTGVKDFFYEPALGLITSPKDFGKGLAKGSISLVKNSVYGLFNTLSKLSNTVGKGVAILSFDDQYLRNRQRSRQKKAKHLGEGVVYGFKSLGKGVIDGVTGVVTKPIEGAIKGSIEGFAKGMAQGVVGVAVKPVVGVFDLVTMTTEGIRNTTNLFKDTTRMRPPRC-------FGTDNLLVEYNFEQSEGHYILETTFKGRFKNSDTYII 4497
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VPS13_YEAST (Vacuolar protein sorting-associated protein 13 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS13 PE=1 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 7.030e-16 Identity = 66/235 (28.09%), Postives = 120/235 (51.06%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKS--PTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGI-VAFTFDEQAVARMERQLKGE-----ASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGK 682 ++K+ GSA GNP+G ++ G+ D P + + + P + +A+G S TV+ LSD+ ++F+ + KG+ V + Q V R+++++ A+ ++ + + GL+G+ P K +K G G L G+ G+ GL + A L++T +Q +++ + + M + CRVRLPR + + ++PY EA G LK + G ++ Y+ L PGK Sbjct: 2831 IHKILGSADCFGNPVGLFNTISSGVWDLFYEPYQGYMMNDRPQEIGIHLAKGGLSFAKKTVFGLSDSMSKFTGSMAKGLSVTQDLEFQRVRRLQQRINKNNRNALANSAQSFASTLGSGLSGIALDPYKAMQKEGAAGFLKGLGKGIVGLPTKTAIGFLDLTSNLSQGVKSTTTVLDM-QKGCRVRLPRYVDHDQIIKPYDLREAQGQYWLKTVNGGVFMNDEYLSHVIL--PGK 3062
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13E_DICDI (Putative vacuolar protein sorting-associated protein 13E OS=Dictyostelium discoideum GN=vps13E PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 7.409e-16 Identity = 46/177 (25.99%), Postives = 95/177 (53.67%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQ-LKGEASHS--KGII-------NEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRL 502 +YK+ G+ + GNP+G + G+G ++F K ++ + QG+ SL ++VY + D+ + + +A K + + D++ + +ERQ + GE+ ++ +G+I V+ G +G ++ P + ++ G G++ GI G GLV +P A+ + K ++ I+N ++L Sbjct: 3467 VYKILGAFNLFGNPVGLVTNFGIGFKEFFVSMGKGLVGN--SFTDSFGQGSKSLAKHSVYGIFDSGAKLTGSAGKVLSTLSMDQRYI--LERQYIIGESPNTFMQGLILGGRAAKTAVYRGFSGFVKLPYEGGKEAGPKGVVKGIGKGTAGLVLKPIAAGFDFASKVSEGIKNSTQL 3639
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13B_DICDI (Putative vacuolar protein sorting-associated protein 13B OS=Dictyostelium discoideum GN=vps13B PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.429e-14 Identity = 61/257 (23.74%), Postives = 124/257 (48.25%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGEASH--------SKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIMTERLVLVVNCPSLVDLGK 748 ++ + GS+ + G+P+ F ++ G+ + + P G+ L+ +YA ++++++ G ++ DE + R + + K +A H SKG + +G+ G+++ PV+ A + GL G G GV G+ +P + + KT++ IRN + ++ +R R+R PR ++ P++ YS +E+ G +LK+ D K E +S ++ K+ ++ L++ SL+ L K Sbjct: 5731 IHVILGSSNIFGSPLVFFNNISTGMTEAIEDPI---------------MGSIQLMKRILYAAANSSSKLFGTISSGFATWSLDETYLRRRDAEEKVKAKHIAHGFYLGSKGFAMGIIDGVFGIVEHPVRGAMQEGLLGFFKGCGKGVLGIAVKPVTGVFDFASKTSEGIRNNTNIH---PERFRLRTPRFINPREPIKEYSVDESEGNFLLKKNSDDINKSEGNPLSSKMEY--KFHVVLPDCTLLLTSHSLICLSK 5967
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13A_MACFA (Vacuolar protein sorting-associated protein 13A (Fragment) OS=Macaca fascicularis GN=VPS13A PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 2.845e-14 Identity = 54/182 (29.67%), Postives = 88/182 (48.35%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVAR----MERQ----LKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQR 523 MY + V+GNP G R G+ F P + ++ P + GMA G +L+ V L+ AA++ + A KG+ A T DE + M +Q +G KG+++ G+TG++ P+K A+K G G G+ G+ G V RP I+++ T Q I+ + ++ S R Sbjct: 382 MYVLILGLDVLGNPFGLIREFSEGVEAFFYEPYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITGAMAKGVAAMTMDEDYQQKRREAMNKQPAGFREGITRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKRATETSEVESLR 563
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13A_MOUSE (Vacuolar protein sorting-associated protein 13A OS=Mus musculus GN=Vps13a PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 4.299e-14 Identity = 54/182 (29.67%), Postives = 88/182 (48.35%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVAR----MERQ----LKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQR 523 MY + V+GNP G R G+ F P + ++ P + GMA G +L+ V L+ AA++ + A KG+ A T DE + M +Q +G KG+++ G+TG++ P+K A+K G G G+ G+ G V RP I+++ T Q I+ + ++ S R Sbjct: 2848 MYVLILGLDVLGNPFGLIREFSEGVEAFFYEPYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITSAMAKGVAAMTMDEDYQQKRREAMNKQPAGLREGITRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVTRPTGGIIDMASSTFQGIKRATETSEVESLR 3029
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13A_HUMAN (Vacuolar protein sorting-associated protein 13A OS=Homo sapiens GN=VPS13A PE=1 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 1.244e-13 Identity = 54/182 (29.67%), Postives = 88/182 (48.35%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVAR----MERQ----LKGEASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQR 523 MY + V+GNP G R G+ F P + ++ P + GMA G +L+ V L+ AA++ + A KG+ A T DE + M +Q +G KG+++ G+TG++ P+K A+K G G G+ G+ G V RP I+++ T Q I+ + ++ S R Sbjct: 2856 MYVLILGLDVLGNPFGLIREFSEGVEAFFYEPYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITGAMAKGVAAMTMDEDYQQKRREAMNKQPAGFREGITRGGKGLVSGFVSGITGIVTKPIKGAQKGGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKRATETSEVESLR 3037
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Match: VP13C_HUMAN (Vacuolar protein sorting-associated protein 13C OS=Homo sapiens GN=VPS13C PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 5.787e-13 Identity = 71/248 (28.63%), Postives = 114/248 (45.97%), Query Frame = 2 Query: 2 MYKVFGSAGVIGNPMGFARSLGVGIRDFLAVPAKSILKSPTGLITGMAQGTTSLLSNTVYALSDAATQFSKAAHKGIVAFTFDEQAVARMERQLKGE--------ASHSKGIINEVFEGLTGLLQSPVKEAEKHGLPGILSGIALGVTGLVGRPAASILEVTGKTAQSIRNRSRLYQMGSQRCRVXXXXXXXXXXXXXXYSWEEAVGISVLKEADDGKLKDEVYVMSKALKNPGKYVIM-TERLVLVV 718 MY + V+GNP G R L G+ P + ++ P G+ G SL +TV + ++ + + KG+ A T D++ + +L + A KG + V G+TG++ PV+ A+K G G GI G+ G V RP I+++ T Q I+ R + + +R PR + + +RPY +E+ G S L E KL+ E Y A+ K ++M T R VL + Sbjct: 3413 MYVLVLGLDVLGNPFGLIRGLSEGVEALFYEPFQGAVQGPEEFAEGLVIGVRSLFGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQQKRREELSRQPRDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAAGFFKGIGKGLVGAVARPTGGIVDMASSTFQGIQ---RAAESTEEVSSLRPPRLIHEDGIIRPYDRQESEG-SDLLENHIKKLEGETYRYHCAIPGSKKTILMVTNRRVLCI 3656 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0009878 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 15
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0009878 ID=g.arboreum_cottongen_reftransV1_0009878; Name=g.arboreum_cottongen_reftransV1_0009878; organism=Gossypium arboreum; type=contig; length=1329bpback to top |