g.arboreum_cottongen_reftransV1_0009735, g.arboreum_cottongen_reftransV1_0009735 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0009735
Unique Nameg.arboreum_cottongen_reftransV1_0009735
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length303
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr7chromosomeg.arboreum_cottongen_reftransV1_0009735:1..303 .
Chr7:91525300..91525920 +
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009735 vs. ExPASy TrEMBL
Match: A0A0B0N9R7_GOSAR (Dynamin-related 5A-like protein OS=Gossypium arboreum GN=F383_04251 PE=4 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 3.389e-61
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 3 
Query:    3 LHDGIKGGYDEEKFKPYIGFCSLREYLESELQKRYKEAAPATLALLEQRCSDVNIELARIDSKIQATSDVSHLRKSAMMHAAYISNHVGVLIDGAADPSP 302
            LHDGIKGGYDEEKFKPYIGFCSLREYLESELQKRYKEAAPATLALLEQRCSDVNIELARIDSKIQATSDVSHLRKSAMMHAAYISNHVGVLIDGAADPSP
Sbjct:  301 LHDGIKGGYDEEKFKPYIGFCSLREYLESELQKRYKEAAPATLALLEQRCSDVNIELARIDSKIQATSDVSHLRKSAMMHAAYISNHVGVLIDGAADPSP 400
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009735 vs. ExPASy TrEMBL
Match: A0A0D2Q8Y0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G069500 PE=4 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 8.631e-61
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 3 
Query:    3 LHDGIKGGYDEEKFKPYIGFCSLREYLESELQKRYKEAAPATLALLEQRCSDVNIELARIDSKIQATSDVSHLRKSAMMHAAYISNHVGVLIDGAADPSP 302
            LHDGIKGGYDEEKFKPYIGFCSLREYLESELQKRYKEAAPATLALLEQRCS+VNIELARIDSKIQATSDVSHLRKSAMMHAAYISNHVGVLIDGAADPSP
Sbjct:  301 LHDGIKGGYDEEKFKPYIGFCSLREYLESELQKRYKEAAPATLALLEQRCSEVNIELARIDSKIQATSDVSHLRKSAMMHAAYISNHVGVLIDGAADPSP 400
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009735 vs. ExPASy TrEMBL
Match: A0A0D2R1V7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G069500 PE=4 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 1.259e-60
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 3 
Query:    3 LHDGIKGGYDEEKFKPYIGFCSLREYLESELQKRYKEAAPATLALLEQRCSDVNIELARIDSKIQATSDVSHLRKSAMMHAAYISNHVGVLIDGAADPSP 302
            LHDGIKGGYDEEKFKPYIGFCSLREYLESELQKRYKEAAPATLALLEQRCS+VNIELARIDSKIQATSDVSHLRKSAMMHAAYISNHVGVLIDGAADPSP
Sbjct:  301 LHDGIKGGYDEEKFKPYIGFCSLREYLESELQKRYKEAAPATLALLEQRCSEVNIELARIDSKIQATSDVSHLRKSAMMHAAYISNHVGVLIDGAADPSP 400
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009735 vs. ExPASy TrEMBL
Match: A0A0B0P1D2_GOSAR (Dynamin-related 5A-like protein OS=Gossypium arboreum GN=F383_25308 PE=4 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 9.514e-58
Identity = 95/100 (95.00%), Postives = 98/100 (98.00%), Query Frame = 3 
Query:    3 LHDGIKGGYDEEKFKPYIGFCSLREYLESELQKRYKEAAPATLALLEQRCSDVNIELARIDSKIQATSDVSHLRKSAMMHAAYISNHVGVLIDGAADPSP 302
            LHDGIKGGYDEEKFKPYIGFCSLREYLESELQKRYKEAAPATLALLEQRCS+VNIEL R+DSKIQATSDVSHLRKSAMMHAA ISNHVGVLIDGAADP+P
Sbjct:  299 LHDGIKGGYDEEKFKPYIGFCSLREYLESELQKRYKEAAPATLALLEQRCSEVNIELERLDSKIQATSDVSHLRKSAMMHAASISNHVGVLIDGAADPAP 398
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009735 vs. ExPASy TrEMBL
Match: A0A061F7K9_THECC (Dynamin related protein 5A isoform 2 OS=Theobroma cacao GN=TCM_031538 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 9.515e-56
Identity = 91/100 (91.00%), Postives = 98/100 (98.00%), Query Frame = 3 
Query:    3 LHDGIKGGYDEEKFKPYIGFCSLREYLESELQKRYKEAAPATLALLEQRCSDVNIELARIDSKIQATSDVSHLRKSAMMHAAYISNHVGVLIDGAADPSP 302
            L+DGIKGGYDEEKF+PYIGF SLREYLESELQKRYKEAAPATLALLEQRCS+VNIELAR+DSKIQATSDV+HLR+SAMMHAA ISNHVGVLIDGAADP+P
Sbjct:  110 LNDGIKGGYDEEKFRPYIGFSSLREYLESELQKRYKEAAPATLALLEQRCSEVNIELARMDSKIQATSDVAHLRRSAMMHAASISNHVGVLIDGAADPAP 209
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009735 vs. ExPASy TrEMBL
Match: A0A061F6M6_THECC (Dynamin related protein 5A isoform 1 OS=Theobroma cacao GN=TCM_031538 PE=4 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 4.127e-55
Identity = 91/100 (91.00%), Postives = 98/100 (98.00%), Query Frame = 3 
Query:    3 LHDGIKGGYDEEKFKPYIGFCSLREYLESELQKRYKEAAPATLALLEQRCSDVNIELARIDSKIQATSDVSHLRKSAMMHAAYISNHVGVLIDGAADPSP 302
            L+DGIKGGYDEEKF+PYIGF SLREYLESELQKRYKEAAPATLALLEQRCS+VNIELAR+DSKIQATSDV+HLR+SAMMHAA ISNHVGVLIDGAADP+P
Sbjct:  300 LNDGIKGGYDEEKFRPYIGFSSLREYLESELQKRYKEAAPATLALLEQRCSEVNIELARMDSKIQATSDVAHLRRSAMMHAASISNHVGVLIDGAADPAP 399
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009735 vs. ExPASy TrEMBL
Match: A0A0D2UZJ4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G384500 PE=4 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 6.806e-55
Identity = 92/100 (92.00%), Postives = 95/100 (95.00%), Query Frame = 3 
Query:    3 LHDGIKGGYDEEKFKPYIGFCSLREYLESELQKRYKEAAPATLALLEQRCSDVNIELARIDSKIQATSDVSHLRKSAMMHAAYISNHVGVLIDGAADPSP 302
            L DGIKGGYDEEKFKPYIGFCSLREYLE ELQKRYKEAAPATLALLEQRCS+VNIEL R+DSKIQATSDVSHLRKSAMMHAA ISN VGVLIDGAADP+P
Sbjct:  299 LRDGIKGGYDEEKFKPYIGFCSLREYLELELQKRYKEAAPATLALLEQRCSEVNIELERLDSKIQATSDVSHLRKSAMMHAASISNQVGVLIDGAADPAP 398
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009735 vs. ExPASy TrEMBL
Match: F6H235_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g02500 PE=4 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 2.813e-49
Identity = 82/100 (82.00%), Postives = 91/100 (91.00%), Query Frame = 3 
Query:    3 LHDGIKGGYDEEKFKPYIGFCSLREYLESELQKRYKEAAPATLALLEQRCSDVNIELARIDSKIQATSDVSHLRKSAMMHAAYISNHVGVLIDGAADPSP 302
            L DGIKGG+DEEKF+P+IGF  LREYLESELQKRYKEAAPATLALLEQRC +V  ELAR+DSKIQATSDV+HLR+ AM+H A ISNHVGVLIDGAADP+P
Sbjct:  319 LRDGIKGGFDEEKFRPFIGFGCLREYLESELQKRYKEAAPATLALLEQRCCEVTTELARLDSKIQATSDVAHLRRCAMLHTASISNHVGVLIDGAADPAP 418
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009735 vs. ExPASy TrEMBL
Match: B9HZT9_POPTR (Dynamin family protein OS=Populus trichocarpa GN=POPTR_0011s11930g PE=4 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.443e-49
Identity = 81/100 (81.00%), Postives = 92/100 (92.00%), Query Frame = 3 
Query:    3 LHDGIKGGYDEEKFKPYIGFCSLREYLESELQKRYKEAAPATLALLEQRCSDVNIELARIDSKIQATSDVSHLRKSAMMHAAYISNHVGVLIDGAADPSP 302
            L DG+KGG+DEEKF+PYIGF +LR+YLESELQKRYKEAAPATLALLEQRC +VN EL R+DSKI ATSDV+HLR+SAM+HAA ISNHVG LIDGAADP+P
Sbjct:  299 LRDGVKGGFDEEKFRPYIGFSTLRDYLESELQKRYKEAAPATLALLEQRCCEVNAELDRMDSKILATSDVAHLRRSAMLHAASISNHVGALIDGAADPAP 398
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009735 vs. ExPASy TrEMBL
Match: K7LV22_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.349e-48
Identity = 83/100 (83.00%), Postives = 92/100 (92.00%), Query Frame = 3 
Query:    3 LHDGIKGGYDEEKFKPYIGFCSLREYLESELQKRYKEAAPATLALLEQRCSDVNIELARIDSKIQATSDVSHLRKSAMMHAAYISNHVGVLIDGAADPSP 302
            L +G+KGG+DEEKFK YIGF  LR+YLESELQK+YKEAAPATLALLEQRCS++  ELAR+DSKIQATSDVSHLRKSAM+HAA ISNHVG LIDGAADPSP
Sbjct:  296 LQEGVKGGFDEEKFKSYIGFGRLRDYLESELQKKYKEAAPATLALLEQRCSELTSELARMDSKIQATSDVSHLRKSAMLHAASISNHVGALIDGAADPSP 395
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009735 vs. ExPASy Swiss-Prot
Match: DRP5A_ARATH (Dynamin-related protein 5A OS=Arabidopsis thaliana GN=DRP5A PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 5.483e-44
Identity = 72/100 (72.00%), Postives = 89/100 (89.00%), Query Frame = 3 
Query:    3 LHDGIKGGYDEEKFKPYIGFCSLREYLESELQKRYKEAAPATLALLEQRCSDVNIELARIDSKIQATSDVSHLRKSAMMHAAYISNHVGVLIDGAADPSP 302
            L +G+KGG+DEEKF+  IGF SLR++LESELQKRYKEAAPATLALLE+RCS+V  ++ R+D KIQATSDV+HLRK+AM++ A ISNHVG LIDGAA+P+P
Sbjct:  307 LREGVKGGFDEEKFRSCIGFGSLRDFLESELQKRYKEAAPATLALLEERCSEVTDDMLRMDMKIQATSDVAHLRKAAMLYTASISNHVGALIDGAANPAP 406
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0009735 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0N9R7_GOSAR3.389e-61100.00Dynamin-related 5A-like protein OS=Gossypium arbor... [more]
A0A0D2Q8Y0_GOSRA8.631e-6199.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2R1V7_GOSRA1.259e-6099.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B0P1D2_GOSAR9.514e-5895.00Dynamin-related 5A-like protein OS=Gossypium arbor... [more]
A0A061F7K9_THECC9.515e-5691.00Dynamin related protein 5A isoform 2 OS=Theobroma ... [more]
A0A061F6M6_THECC4.127e-5591.00Dynamin related protein 5A isoform 1 OS=Theobroma ... [more]
A0A0D2UZJ4_GOSRA6.806e-5592.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]
F6H235_VITVI2.813e-4982.00Putative uncharacterized protein OS=Vitis vinifera... [more]
B9HZT9_POPTR4.443e-4981.00Dynamin family protein OS=Populus trichocarpa GN=P... [more]
K7LV22_SOYBN1.349e-4883.00Uncharacterized protein OS=Glycine max PE=4 SV=1[more]

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BLAST of g.arboreum_cottongen_reftransV1_0009735 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DRP5A_ARATH5.483e-4472.00Dynamin-related protein 5A OS=Arabidopsis thaliana... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11566:SF44DYNAMIN-LIKE PROTEIN Ccoord: 5..98
IPR022812Dynamin superfamilyPANTHERPTHR11566DYNAMINcoord: 5..98

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0009735 ID=g.arboreum_cottongen_reftransV1_0009735; Name=g.arboreum_cottongen_reftransV1_0009735; organism=Gossypium arboreum; type=contig; length=303bp
ATTTGCATGATGGAATCAAGGGAGGTTATGATGAAGAAAAGTTCAAGCCC
TATATTGGTTTTTGTTCTTTGAGGGAGTATTTGGAATCAGAACTACAAAA
GAGATACAAAGAAGCTGCCCCAGCTACACTGGCATTGCTTGAGCAGCGCT
GCAGTGATGTTAACATTGAGCTGGCAAGAATTGACTCCAAAATACAAGCA
ACTTCCGATGTTTCTCATCTTCGAAAATCAGCCATGATGCATGCGGCATA
TATAAGCAATCATGTGGGGGTTTTGATCGATGGAGCAGCAGATCCTTCCC
CCG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR022812Dynamin