g.arboreum_cottongen_reftransV1_0005690, g.arboreum_cottongen_reftransV1_0005690 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0005690
Unique Nameg.arboreum_cottongen_reftransV1_0005690
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length559
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr6chromosomeg.arboreum_cottongen_reftransV1_0005690:1..559 .
Chr6:121161236..121162680 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: A0A0B0PZG2_GOSAR (Sn1-specific diacylglycerol lipase alpha OS=Gossypium arboreum GN=F383_03154 PE=4 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 3.080e-82
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = -3
Query:    3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371
            MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY
Sbjct:    1 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 123          
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: Q1RN86_GOSHI (Calmodulin-binding heat shock protein OS=Gossypium hirsutum PE=4 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 3.777e-82
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = -3
Query:    3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371
            MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY
Sbjct:    1 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 123          
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: Q1RN82_GOSHI (Calmodulin binding heat shock protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.479e-79
Identity = 119/123 (96.75%), Postives = 122/123 (99.19%), Query Frame = -3
Query:    3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371
            MSIICGLPLL CIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTY+DTRG+APSYILYLDHEH+DIVLAIRGLNLAKESDY
Sbjct:    1 MSIICGLPLLGCIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYKDTRGRAPSYILYLDHEHSDIVLAIRGLNLAKESDY 123          
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: A0A0D2UAV2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G276100 PE=4 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.991e-79
Identity = 119/123 (96.75%), Postives = 122/123 (99.19%), Query Frame = -3
Query:    3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371
            MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVT GLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTY+DTRG+APSYILYLDHEH+DIVLAIRGLNLAKESDY
Sbjct:    1 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTCGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYKDTRGRAPSYILYLDHEHSDIVLAIRGLNLAKESDY 123          
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: A0A0D2RNK3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G276100 PE=4 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 5.198e-79
Identity = 119/123 (96.75%), Postives = 122/123 (99.19%), Query Frame = -3
Query:    3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371
            MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVT GLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTY+DTRG+APSYILYLDHEH+DIVLAIRGLNLAKESDY
Sbjct:    1 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTCGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYKDTRGRAPSYILYLDHEHSDIVLAIRGLNLAKESDY 123          
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: A0A061G228_THECC (Alpha/beta-Hydrolases superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_015194 PE=4 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 9.467e-75
Identity = 112/123 (91.06%), Postives = 119/123 (96.75%), Query Frame = -3
Query:    3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371
            MSIICGLPLLEC+YCLACARWAW RCLHTAGHDS TWGLATAEEFEPVPRLCRYILAVYE+++ HPLWEPPGGYGINPDWLI RKTYEDT+G+APSYILYLDH+HADIVLAIRGLNLAKESDY
Sbjct:    1 MSIICGLPLLECVYCLACARWAWKRCLHTAGHDSETWGLATAEEFEPVPRLCRYILAVYEEDLWHPLWEPPGGYGINPDWLIRRKTYEDTQGRAPSYILYLDHDHADIVLAIRGLNLAKESDY 123          
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: A0A061G0Z1_THECC (Alpha/beta-Hydrolases superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_015194 PE=4 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.772e-74
Identity = 112/123 (91.06%), Postives = 119/123 (96.75%), Query Frame = -3
Query:    3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371
            MSIICGLPLLEC+YCLACARWAW RCLHTAGHDS TWGLATAEEFEPVPRLCRYILAVYE+++ HPLWEPPGGYGINPDWLI RKTYEDT+G+APSYILYLDH+HADIVLAIRGLNLAKESDY
Sbjct:    1 MSIICGLPLLECVYCLACARWAWKRCLHTAGHDSETWGLATAEEFEPVPRLCRYILAVYEEDLWHPLWEPPGGYGINPDWLIRRKTYEDTQGRAPSYILYLDHDHADIVLAIRGLNLAKESDY 123          
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: A0A0D2RQH0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G048400 PE=4 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 6.663e-74
Identity = 110/123 (89.43%), Postives = 120/123 (97.56%), Query Frame = -3
Query:    3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371
            MSIICG+PLLEC+YCLACARWAW RCLHTAGHDS TWGLATAEEFEPVPRLCRYILAVYE+++RHPL+EPPGGYGINPDWLILRKTYE+T+G+AP YILYLDH+HADIVLAIRGLNLAKESDY
Sbjct:    1 MSIICGVPLLECVYCLACARWAWKRCLHTAGHDSETWGLATAEEFEPVPRLCRYILAVYEEDLRHPLFEPPGGYGINPDWLILRKTYENTQGRAPPYILYLDHDHADIVLAIRGLNLAKESDY 123          
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: A0A0D2RX92_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G048400 PE=4 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 1.048e-73
Identity = 110/123 (89.43%), Postives = 120/123 (97.56%), Query Frame = -3
Query:    3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371
            MSIICG+PLLEC+YCLACARWAW RCLHTAGHDS TWGLATAEEFEPVPRLCRYILAVYE+++RHPL+EPPGGYGINPDWLILRKTYE+T+G+AP YILYLDH+HADIVLAIRGLNLAKESDY
Sbjct:    1 MSIICGVPLLECVYCLACARWAWKRCLHTAGHDSETWGLATAEEFEPVPRLCRYILAVYEEDLRHPLFEPPGGYGINPDWLILRKTYENTQGRAPPYILYLDHDHADIVLAIRGLNLAKESDY 123          
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Match: A0A0D2SS69_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G048400 PE=4 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 1.283e-73
Identity = 110/123 (89.43%), Postives = 120/123 (97.56%), Query Frame = -3
Query:    3 MSIICGLPLLECIYCLACARWAWNRCLHTAGHDSVTWGLATAEEFEPVPRLCRYILAVYEDNIRHPLWEPPGGYGINPDWLILRKTYEDTRGQAPSYILYLDHEHADIVLAIRGLNLAKESDY 371
            MSIICG+PLLEC+YCLACARWAW RCLHTAGHDS TWGLATAEEFEPVPRLCRYILAVYE+++RHPL+EPPGGYGINPDWLILRKTYE+T+G+AP YILYLDH+HADIVLAIRGLNLAKESDY
Sbjct:    1 MSIICGVPLLECVYCLACARWAWKRCLHTAGHDSETWGLATAEEFEPVPRLCRYILAVYEEDLRHPLFEPPGGYGINPDWLILRKTYENTQGRAPPYILYLDHDHADIVLAIRGLNLAKESDY 123          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0PZG2_GOSAR3.080e-82100.00Sn1-specific diacylglycerol lipase alpha OS=Gossyp... [more]
Q1RN86_GOSHI3.777e-82100.00Calmodulin-binding heat shock protein OS=Gossypium... [more]
Q1RN82_GOSHI2.479e-7996.75Calmodulin binding heat shock protein OS=Gossypium... [more]
A0A0D2UAV2_GOSRA2.991e-7996.75Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2RNK3_GOSRA5.198e-7996.75Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061G228_THECC9.467e-7591.06Alpha/beta-Hydrolases superfamily protein isoform ... [more]
A0A061G0Z1_THECC1.772e-7491.06Alpha/beta-Hydrolases superfamily protein isoform ... [more]
A0A0D2RQH0_GOSRA6.663e-7489.43Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2RX92_GOSRA1.048e-7389.43Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2SS69_GOSRA1.283e-7389.43Uncharacterized protein OS=Gossypium raimondii GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0005690 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0005690 ID=g.arboreum_cottongen_reftransV1_0005690; Name=g.arboreum_cottongen_reftransV1_0005690; organism=Gossypium arboreum; type=contig; length=559bp
TGGTAATCACTTTCTTTTGCCAAATTAAGACCTCTAATGGCAAGAACTAT
ATCGGCATGCTCGTGATCGAGGTATAGTATGTAAGAAGGAGCCTGTCCTC
GAGTGTCTTCGTAAGTTTTTCTGAGAATTAACCAATCAGGGTTGATCCCA
TATCCTCCAGGGGGTTCCCAAAGGGGATGCCGAATATTGTCCTCATAAAC
AGCTAGAATGTAGCGGCAAAGTCGAGGAACAGGCTCGAATTCTTCTGCGG
TTGCAAGACCCCATGTTACACTATCGTGGCCGGCGGTATGCAGGCATCGA
TTCCATGCCCATCGAGCACAAGCTAGGCAGTAAATACATTCTAGGAGTGG
GAGGCCACATATGATCGACATCGATGCCTACTCTCGGAGATCGACAATGT
AGAGCACGAATTTGCATGTAAATGGCCTGGAAAACAAGGGAAAGTATTCC
ACAGATAGAGTAAATGATGACTATAGAAAGAACTGCAACTCGAGGTGGCT
CATAAATTGATAGCTGTACAAAGAAACCGATCTGGGTCTCTCTAGCATTA
GGGTTTTCA
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