g.arboreum_cottongen_reftransV1_0015233, g.arboreum_cottongen_reftransV1_0015233 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: A0A0D2T0A5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G139400 PE=4 SV=1) HSP 1 Score: 245.358 bits (625), Expect = 1.502e-79 Identity = 120/122 (98.36%), Postives = 121/122 (99.18%), Query Frame = 2 Query: 122 MATLSSVNLVTPRIIANGPDVPTVKVPCLNRPWKRVSPMKLRVGPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487 MATLSSVNLVTPR IANGPDVPT+KVPCLNRPWKRVSPMKLRVGPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN Sbjct: 1 MATLSSVNLVTPRTIANGPDVPTLKVPCLNRPWKRVSPMKLRVGPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 122
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: A0A0D2TDJ0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G122700 PE=4 SV=1) HSP 1 Score: 186.808 bits (473), Expect = 1.454e-56 Identity = 98/128 (76.56%), Postives = 107/128 (83.59%), Query Frame = 2 Query: 122 MATLSSVNLVTPRIIANGPDVPT---VKVPCLNRPWKRVSPMKLRVG---PVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487 MATLSSV+LV+ R +AN D VKV L++PWKRVS + R+ PVRAAPD ISEKVEKS+KEAQE CSDDPASGECVAAWDEVEELSAAASHARDKKKD+DPLENYCKDNPETDECRTYDN Sbjct: 1 MATLSSVSLVSLRAVANVRDSKKGGPVKVATLSQPWKRVSQSQRRMQVMKPVRAAPDSISEKVEKSVKEAQEACSDDPASGECVAAWDEVEELSAAASHARDKKKDNDPLENYCKDNPETDECRTYDN 128
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: A0A061DRD6_THECC (CP12 domain-containing protein 1 OS=Theobroma cacao GN=TCM_004809 PE=4 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 2.803e-55 Identity = 94/129 (72.87%), Postives = 109/129 (84.50%), Query Frame = 2 Query: 122 MATLSSVNLVTPRIIANGPD---VPTVKVPCLNRPWKRVSPMKLR----VGPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487 MATLSS+NLV+PR++AN D +VKVP LN+PWKRVS + R + PVRAAPD IS+KVEKSIKEA+E CS DPASGECVAAWDEVEELSAAASHAR+KKK +DPLENYCKD+PETDECRTY++ Sbjct: 80 MATLSSLNLVSPRVVANVLDSTKASSVKVPYLNQPWKRVSQLGSRRMQVIRPVRAAPDSISDKVEKSIKEAEEACSGDPASGECVAAWDEVEELSAAASHAREKKKGNDPLENYCKDHPETDECRTYED 208
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: A0A0D2LQL3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G144300 PE=4 SV=1) HSP 1 Score: 182.185 bits (461), Expect = 1.017e-54 Identity = 93/126 (73.81%), Postives = 105/126 (83.33%), Query Frame = 2 Query: 122 MATLSSVNLVTPRIIANGPDVPT---VKVPCLNRPWKRV-SPMKLRVGPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487 MATL ++N VTPR A+ D +KVP LN+PWKRV SP++ R VRAAPD +SEKVE+SIKEAQE CSDDPASGECVAAWDEVEELSAAASHARD+ KD+DPLENYCKDNPETDEC+TYDN Sbjct: 1 MATLFTLNFVTPRATASLRDSTKGSPIKVPYLNQPWKRVLSPLESRRMQVRAAPDSLSEKVEQSIKEAQEACSDDPASGECVAAWDEVEELSAAASHARDRLKDNDPLENYCKDNPETDECKTYDN 126
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: A0A067JWM5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14028 PE=4 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 1.699e-52 Identity = 88/126 (69.84%), Postives = 101/126 (80.16%), Query Frame = 2 Query: 122 MATLSSVNLVTPRIIANGPDVPTVK-VPCLNRPWKR---VSPMKLRVGPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487 MATL+S+NL TPR++A D P + + LN PW R V ++R+ P RAAPD ISEKVEKSIKEA+E C+ DPASGECVAAWDEVEELSAAASHARDKKK+ DPLE +CKDNPETDECRTYDN Sbjct: 1 MATLTSLNLSTPRVVAKATDAPKAQPIFKLNHPWNRTYQVGSGRMRMQPARAAPDRISEKVEKSIKEAEEACAGDPASGECVAAWDEVEELSAAASHARDKKKESDPLEEFCKDNPETDECRTYDN 126
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: B9RNE5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1347170 PE=4 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 2.092e-48 Identity = 84/128 (65.62%), Postives = 101/128 (78.91%), Query Frame = 2 Query: 122 MATLSSVNLVTP-RIIANGPDVPTVK-VPCLNRPWKR----VSPMKLRVGPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487 MATL+S+N+ TP R+IA D P + + LN PWKR + ++++ PVRAAPD ISEKVE+SIK+A++ C DDPASGECVAAWD VEELSAAASHARDK KD DPLE YCKDNPETDECRTY++ Sbjct: 1 MATLTSLNISTPARVIAKATDAPKAQPIFKLNNPWKRAGCQLRSQRMQIKPVRAAPDSISEKVEESIKDAKQACEDDPASGECVAAWDTVEELSAAASHARDKAKDSDPLETYCKDNPETDECRTYED 128
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: B9I9I9_POPTR (CP12 domain-containing family protein OS=Populus trichocarpa GN=POPTR_0014s11580g PE=4 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 2.292e-48 Identity = 82/126 (65.08%), Postives = 100/126 (79.37%), Query Frame = 2 Query: 122 MATLSSVNLVTPRIIANGPDVPTVK-VPCLNRPWKR---VSPMKLRVGPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487 MAT++ +NL TPR++A D P + + LN+ W+R + +++V PVRAAP+GISEKVEKSIKEA+E CS D ASGEC AAWDEVEELSAAASHA+DKKK DPLE YCKDNPETDECRTY++ Sbjct: 1 MATIAGLNLSTPRVLAKATDTPKAQPLIKLNQQWRRSYQLGSGRVQVRPVRAAPEGISEKVEKSIKEAEEACSGDAASGECAAAWDEVEELSAAASHAKDKKKGSDPLEEYCKDNPETDECRTYED 126
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: A9PHK5_POPTR (CP12 domain-containing family protein OS=Populus trichocarpa GN=POPTR_0002s19710g PE=2 SV=1) HSP 1 Score: 165.622 bits (418), Expect = 3.160e-48 Identity = 82/127 (64.57%), Postives = 99/127 (77.95%), Query Frame = 2 Query: 122 MATLSSVNLVTPRIIANGPDVPTVKVPC-LNRPWKRV----SPMKLRVGPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487 MAT++ +NL TPR++A D P + LN+PW+R S ++++ PVRAAPD ISEKVEKSIK+A+ CSDD ASGEC AAWDEVEELSAAASHA+DKKK DPLE YCKDNPETDECRTY++ Sbjct: 1 MATIAGLNLSTPRVLAKATDKPKAQALVKLNQPWRRTYHLGSGGRMQIRPVRAAPDSISEKVEKSIKDAEAACSDDAASGECAAAWDEVEELSAAASHAKDKKKGSDPLEEYCKDNPETDECRTYED 127
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: A9PIU1_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 4.744e-47 Identity = 83/127 (65.35%), Postives = 99/127 (77.95%), Query Frame = 2 Query: 122 MATLSSVNLVTPRIIANGPDVPTVKVPC-LN---RPWK-RVSPMKLRVGPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487 MAT++ +NL TPR++A D P + P LN R W ++ +++V PVRAAP+GISEKVEKSIKEA+E CS D ASGEC AAWDEVEELSAAASHA+DKKK DPLE YCKDNPETDECRTY++ Sbjct: 1 MATIAGLNLSTPRVLAKATDTPKAQPPIKLNQQRRSWSYQLGSGRVQVRPVRAAPEGISEKVEKSIKEAEEACSGDAASGECAAAWDEVEELSAAASHAKDKKKGSDPLEEYCKDNPETDECRTYED 127
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: A0A0A0KTG0_CUCSA (Chloroplast protein 12 OS=Cucumis sativus GN=Csa_4G003670 PE=4 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 2.929e-46 Identity = 83/130 (63.85%), Postives = 98/130 (75.38%), Query Frame = 2 Query: 122 MATLSSVNLVTPRIIANGPDVPTVKVPCLNRPWKRVS--------PMKLRVGPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487 MAT+S VNL +PRI+A P V++ LN W R S ++LRV PV AAPD IS+KVE+SIK A+E C+ DP SGEC AAWDEVEELSAAASHARD+KK+ DPLE+YCKDNPET+ECRTYDN Sbjct: 1 MATISGVNLSSPRIMAKAAKTPKVQL--LNVGWLRCSWKQSAQLGAIRLRVPPVHAAPDKISDKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKKESDPLESYCKDNPETEECRTYDN 128
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy Swiss-Prot
Match: CP122_ARATH (Calvin cycle protein CP12-2, chloroplastic OS=Arabidopsis thaliana GN=CP12-2 PE=1 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 1.542e-40 Identity = 78/131 (59.54%), Postives = 96/131 (73.28%), Query Frame = 2 Query: 122 MATLSS-VNLVTPRIIANGPDVPT-VKVPC-LNRPWK---RVSPMKLRVGPVRAAPDG-ISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDD--DPLENYCKDNPETDECRTYDN 487 MAT+++ +N+ T R+ + P + P LN W R + +++ P++AAP+G IS+ VEKSIKEAQE C+ DP SGECVAAWDEVEELSAAASHARDKKK D DPLE YCKDNPET+ECRTYDN Sbjct: 1 MATIATGLNIATQRVFVTSENRPVCLAGPVHLNNSWNLGSRTTNRMMKLQPIKAAPEGGISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDKKKADGSDPLEEYCKDNPETNECRTYDN 131
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy Swiss-Prot
Match: CP121_ARATH (Calvin cycle protein CP12-1, chloroplastic OS=Arabidopsis thaliana GN=CP12-1 PE=1 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 8.809e-38 Identity = 71/97 (73.20%), Postives = 78/97 (80.41%), Query Frame = 2 Query: 206 LNRPWKRVSPMKLRVGPVRAAPDG-ISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKK--DDDPLENYCKDNPETDECRTYDN 487 LN PWK S ++ V V+A +G ISEKVEKSI+EA+E C+DDP SGECVAAWDEVEELSAAASHARDKKK DPLE YC DNPETDECRTYDN Sbjct: 30 LNYPWKFGSMKRMVV--VKATSEGEISEKVEKSIQEAKETCADDPVSGECVAAWDEVEELSAAASHARDKKKAGGSDPLEEYCNDNPETDECRTYDN 124
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy Swiss-Prot
Match: CP123_ARATH (Calvin cycle protein CP12-3, chloroplastic OS=Arabidopsis thaliana GN=CP12-3 PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 1.266e-16 Identity = 37/74 (50.00%), Postives = 53/74 (71.62%), Query Frame = 2 Query: 272 DGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKK--DDDPLENYCKDNPETDECRTYDN 487 + +SE +E+ +KEA E+C + S EC AWDEVEE+S A + R K K + DPLE++C++NPETDECR Y++ Sbjct: 61 EKLSEMIEEKVKEATEVCEAEEMSEECRVAWDEVEEVSQARADLRIKLKLLNQDPLESFCQENPETDECRIYED 134
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy Swiss-Prot
Match: CP12_CHLRE (Calvin cycle protein CP12, chloroplastic OS=Chlamydomonas reinhardtii GN=CP12 PE=1 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 5.918e-15 Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 2 Query: 278 ISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDD----DPLENYCKDNPETDECRTYDN 487 +++KV+ ++KEA++ C+ S +C AWD VEELSAA SH +D K D DPLE +CKD P+ DECR Y++ Sbjct: 35 LNKKVQDAVKEAEDACAKGT-SADCAVAWDTVEELSAAVSHKKDAVKADVTLTDPLEAFCKDAPDADECRVYED 107 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 4
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0015233 ID=g.arboreum_cottongen_reftransV1_0015233; Name=g.arboreum_cottongen_reftransV1_0015233; organism=Gossypium arboreum; type=contig; length=627bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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