g.arboreum_cottongen_reftransV1_0015233, g.arboreum_cottongen_reftransV1_0015233 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0015233
Unique Nameg.arboreum_cottongen_reftransV1_0015233
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length627
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr6chromosomeg.arboreum_cottongen_reftransV1_0015233:1..627 .
Chr6:88508834..88509460 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: A0A0D2T0A5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G139400 PE=4 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 1.502e-79
Identity = 120/122 (98.36%), Postives = 121/122 (99.18%), Query Frame = 2
Query:  122 MATLSSVNLVTPRIIANGPDVPTVKVPCLNRPWKRVSPMKLRVGPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487
            MATLSSVNLVTPR IANGPDVPT+KVPCLNRPWKRVSPMKLRVGPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN
Sbjct:    1 MATLSSVNLVTPRTIANGPDVPTLKVPCLNRPWKRVSPMKLRVGPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 122          
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: A0A0D2TDJ0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G122700 PE=4 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.454e-56
Identity = 98/128 (76.56%), Postives = 107/128 (83.59%), Query Frame = 2
Query:  122 MATLSSVNLVTPRIIANGPDVPT---VKVPCLNRPWKRVSPMKLRVG---PVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487
            MATLSSV+LV+ R +AN  D      VKV  L++PWKRVS  + R+    PVRAAPD ISEKVEKS+KEAQE CSDDPASGECVAAWDEVEELSAAASHARDKKKD+DPLENYCKDNPETDECRTYDN
Sbjct:    1 MATLSSVSLVSLRAVANVRDSKKGGPVKVATLSQPWKRVSQSQRRMQVMKPVRAAPDSISEKVEKSVKEAQEACSDDPASGECVAAWDEVEELSAAASHARDKKKDNDPLENYCKDNPETDECRTYDN 128          
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: A0A061DRD6_THECC (CP12 domain-containing protein 1 OS=Theobroma cacao GN=TCM_004809 PE=4 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 2.803e-55
Identity = 94/129 (72.87%), Postives = 109/129 (84.50%), Query Frame = 2
Query:  122 MATLSSVNLVTPRIIANGPD---VPTVKVPCLNRPWKRVSPMKLR----VGPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487
            MATLSS+NLV+PR++AN  D     +VKVP LN+PWKRVS +  R    + PVRAAPD IS+KVEKSIKEA+E CS DPASGECVAAWDEVEELSAAASHAR+KKK +DPLENYCKD+PETDECRTY++
Sbjct:   80 MATLSSLNLVSPRVVANVLDSTKASSVKVPYLNQPWKRVSQLGSRRMQVIRPVRAAPDSISDKVEKSIKEAEEACSGDPASGECVAAWDEVEELSAAASHAREKKKGNDPLENYCKDHPETDECRTYED 208          
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: A0A0D2LQL3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G144300 PE=4 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.017e-54
Identity = 93/126 (73.81%), Postives = 105/126 (83.33%), Query Frame = 2
Query:  122 MATLSSVNLVTPRIIANGPDVPT---VKVPCLNRPWKRV-SPMKLRVGPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487
            MATL ++N VTPR  A+  D      +KVP LN+PWKRV SP++ R   VRAAPD +SEKVE+SIKEAQE CSDDPASGECVAAWDEVEELSAAASHARD+ KD+DPLENYCKDNPETDEC+TYDN
Sbjct:    1 MATLFTLNFVTPRATASLRDSTKGSPIKVPYLNQPWKRVLSPLESRRMQVRAAPDSLSEKVEQSIKEAQEACSDDPASGECVAAWDEVEELSAAASHARDRLKDNDPLENYCKDNPETDECKTYDN 126          
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: A0A067JWM5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14028 PE=4 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.699e-52
Identity = 88/126 (69.84%), Postives = 101/126 (80.16%), Query Frame = 2
Query:  122 MATLSSVNLVTPRIIANGPDVPTVK-VPCLNRPWKR---VSPMKLRVGPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487
            MATL+S+NL TPR++A   D P  + +  LN PW R   V   ++R+ P RAAPD ISEKVEKSIKEA+E C+ DPASGECVAAWDEVEELSAAASHARDKKK+ DPLE +CKDNPETDECRTYDN
Sbjct:    1 MATLTSLNLSTPRVVAKATDAPKAQPIFKLNHPWNRTYQVGSGRMRMQPARAAPDRISEKVEKSIKEAEEACAGDPASGECVAAWDEVEELSAAASHARDKKKESDPLEEFCKDNPETDECRTYDN 126          
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: B9RNE5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1347170 PE=4 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.092e-48
Identity = 84/128 (65.62%), Postives = 101/128 (78.91%), Query Frame = 2
Query:  122 MATLSSVNLVTP-RIIANGPDVPTVK-VPCLNRPWKR----VSPMKLRVGPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487
            MATL+S+N+ TP R+IA   D P  + +  LN PWKR    +   ++++ PVRAAPD ISEKVE+SIK+A++ C DDPASGECVAAWD VEELSAAASHARDK KD DPLE YCKDNPETDECRTY++
Sbjct:    1 MATLTSLNISTPARVIAKATDAPKAQPIFKLNNPWKRAGCQLRSQRMQIKPVRAAPDSISEKVEESIKDAKQACEDDPASGECVAAWDTVEELSAAASHARDKAKDSDPLETYCKDNPETDECRTYED 128          
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: B9I9I9_POPTR (CP12 domain-containing family protein OS=Populus trichocarpa GN=POPTR_0014s11580g PE=4 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.292e-48
Identity = 82/126 (65.08%), Postives = 100/126 (79.37%), Query Frame = 2
Query:  122 MATLSSVNLVTPRIIANGPDVPTVK-VPCLNRPWKR---VSPMKLRVGPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487
            MAT++ +NL TPR++A   D P  + +  LN+ W+R   +   +++V PVRAAP+GISEKVEKSIKEA+E CS D ASGEC AAWDEVEELSAAASHA+DKKK  DPLE YCKDNPETDECRTY++
Sbjct:    1 MATIAGLNLSTPRVLAKATDTPKAQPLIKLNQQWRRSYQLGSGRVQVRPVRAAPEGISEKVEKSIKEAEEACSGDAASGECAAAWDEVEELSAAASHAKDKKKGSDPLEEYCKDNPETDECRTYED 126          
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: A9PHK5_POPTR (CP12 domain-containing family protein OS=Populus trichocarpa GN=POPTR_0002s19710g PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.160e-48
Identity = 82/127 (64.57%), Postives = 99/127 (77.95%), Query Frame = 2
Query:  122 MATLSSVNLVTPRIIANGPDVPTVKVPC-LNRPWKRV----SPMKLRVGPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487
            MAT++ +NL TPR++A   D P  +    LN+PW+R     S  ++++ PVRAAPD ISEKVEKSIK+A+  CSDD ASGEC AAWDEVEELSAAASHA+DKKK  DPLE YCKDNPETDECRTY++
Sbjct:    1 MATIAGLNLSTPRVLAKATDKPKAQALVKLNQPWRRTYHLGSGGRMQIRPVRAAPDSISEKVEKSIKDAEAACSDDAASGECAAAWDEVEELSAAASHAKDKKKGSDPLEEYCKDNPETDECRTYED 127          
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: A9PIU1_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 4.744e-47
Identity = 83/127 (65.35%), Postives = 99/127 (77.95%), Query Frame = 2
Query:  122 MATLSSVNLVTPRIIANGPDVPTVKVPC-LN---RPWK-RVSPMKLRVGPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487
            MAT++ +NL TPR++A   D P  + P  LN   R W  ++   +++V PVRAAP+GISEKVEKSIKEA+E CS D ASGEC AAWDEVEELSAAASHA+DKKK  DPLE YCKDNPETDECRTY++
Sbjct:    1 MATIAGLNLSTPRVLAKATDTPKAQPPIKLNQQRRSWSYQLGSGRVQVRPVRAAPEGISEKVEKSIKEAEEACSGDAASGECAAAWDEVEELSAAASHAKDKKKGSDPLEEYCKDNPETDECRTYED 127          
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Match: A0A0A0KTG0_CUCSA (Chloroplast protein 12 OS=Cucumis sativus GN=Csa_4G003670 PE=4 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.929e-46
Identity = 83/130 (63.85%), Postives = 98/130 (75.38%), Query Frame = 2
Query:  122 MATLSSVNLVTPRIIANGPDVPTVKVPCLNRPWKRVS--------PMKLRVGPVRAAPDGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDDDPLENYCKDNPETDECRTYDN 487
            MAT+S VNL +PRI+A     P V++  LN  W R S         ++LRV PV AAPD IS+KVE+SIK A+E C+ DP SGEC AAWDEVEELSAAASHARD+KK+ DPLE+YCKDNPET+ECRTYDN
Sbjct:    1 MATISGVNLSSPRIMAKAAKTPKVQL--LNVGWLRCSWKQSAQLGAIRLRVPPVHAAPDKISDKVEESIKNAEEACAGDPVSGECAAAWDEVEELSAAASHARDRKKESDPLESYCKDNPETEECRTYDN 128          
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy Swiss-Prot
Match: CP122_ARATH (Calvin cycle protein CP12-2, chloroplastic OS=Arabidopsis thaliana GN=CP12-2 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.542e-40
Identity = 78/131 (59.54%), Postives = 96/131 (73.28%), Query Frame = 2
Query:  122 MATLSS-VNLVTPRIIANGPDVPT-VKVPC-LNRPWK---RVSPMKLRVGPVRAAPDG-ISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDD--DPLENYCKDNPETDECRTYDN 487
            MAT+++ +N+ T R+     + P  +  P  LN  W    R +   +++ P++AAP+G IS+ VEKSIKEAQE C+ DP SGECVAAWDEVEELSAAASHARDKKK D  DPLE YCKDNPET+ECRTYDN
Sbjct:    1 MATIATGLNIATQRVFVTSENRPVCLAGPVHLNNSWNLGSRTTNRMMKLQPIKAAPEGGISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDKKKADGSDPLEEYCKDNPETNECRTYDN 131          
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy Swiss-Prot
Match: CP121_ARATH (Calvin cycle protein CP12-1, chloroplastic OS=Arabidopsis thaliana GN=CP12-1 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.809e-38
Identity = 71/97 (73.20%), Postives = 78/97 (80.41%), Query Frame = 2
Query:  206 LNRPWKRVSPMKLRVGPVRAAPDG-ISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKK--DDDPLENYCKDNPETDECRTYDN 487
            LN PWK  S  ++ V  V+A  +G ISEKVEKSI+EA+E C+DDP SGECVAAWDEVEELSAAASHARDKKK    DPLE YC DNPETDECRTYDN
Sbjct:   30 LNYPWKFGSMKRMVV--VKATSEGEISEKVEKSIQEAKETCADDPVSGECVAAWDEVEELSAAASHARDKKKAGGSDPLEEYCNDNPETDECRTYDN 124          
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy Swiss-Prot
Match: CP123_ARATH (Calvin cycle protein CP12-3, chloroplastic OS=Arabidopsis thaliana GN=CP12-3 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.266e-16
Identity = 37/74 (50.00%), Postives = 53/74 (71.62%), Query Frame = 2
Query:  272 DGISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKK--DDDPLENYCKDNPETDECRTYDN 487
            + +SE +E+ +KEA E+C  +  S EC  AWDEVEE+S A +  R K K  + DPLE++C++NPETDECR Y++
Sbjct:   61 EKLSEMIEEKVKEATEVCEAEEMSEECRVAWDEVEEVSQARADLRIKLKLLNQDPLESFCQENPETDECRIYED 134          
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy Swiss-Prot
Match: CP12_CHLRE (Calvin cycle protein CP12, chloroplastic OS=Chlamydomonas reinhardtii GN=CP12 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 5.918e-15
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 2
Query:  278 ISEKVEKSIKEAQEMCSDDPASGECVAAWDEVEELSAAASHARDKKKDD----DPLENYCKDNPETDECRTYDN 487
            +++KV+ ++KEA++ C+    S +C  AWD VEELSAA SH +D  K D    DPLE +CKD P+ DECR Y++
Sbjct:   35 LNKKVQDAVKEAEDACAKGT-SADCAVAWDTVEELSAAVSHKKDAVKADVTLTDPLEAFCKDAPDADECRVYED 107          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2T0A5_GOSRA1.502e-7998.36Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2TDJ0_GOSRA1.454e-5676.56Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061DRD6_THECC2.803e-5572.87CP12 domain-containing protein 1 OS=Theobroma caca... [more]
A0A0D2LQL3_GOSRA1.017e-5473.81Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A067JWM5_JATCU1.699e-5269.84Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
B9RNE5_RICCO2.092e-4865.63Putative uncharacterized protein OS=Ricinus commun... [more]
B9I9I9_POPTR2.292e-4865.08CP12 domain-containing family protein OS=Populus t... [more]
A9PHK5_POPTR3.160e-4864.57CP12 domain-containing family protein OS=Populus t... [more]
A9PIU1_9ROSI4.744e-4765.35Putative uncharacterized protein OS=Populus tricho... [more]
A0A0A0KTG0_CUCSA2.929e-4663.85Chloroplast protein 12 OS=Cucumis sativus GN=Csa_4... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0015233 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CP122_ARATH1.542e-4059.54Calvin cycle protein CP12-2, chloroplastic OS=Arab... [more]
CP121_ARATH8.809e-3873.20Calvin cycle protein CP12-1, chloroplastic OS=Arab... [more]
CP123_ARATH1.266e-1650.00Calvin cycle protein CP12-3, chloroplastic OS=Arab... [more]
CP12_CHLRE5.918e-1548.65Calvin cycle protein CP12, chloroplastic OS=Chlamy... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003823Domain of unknown function CP12SMARTSM01093CP12_2coord: 53..122
e-value: 1.6E-31
score: 120.7
IPR003823Domain of unknown function CP12PFAMPF02672CP12coord: 53..121
e-value: 4.0E-29
score: 101.1
NoneNo IPR availablePANTHERPTHR33921:SF2CALVIN CYCLE PROTEIN CP12-1, CHLOROPLASTIC-RELATEDcoord: 2..122
NoneNo IPR availablePANTHERPTHR33921FAMILY NOT NAMEDcoord: 2..122

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0015233 ID=g.arboreum_cottongen_reftransV1_0015233; Name=g.arboreum_cottongen_reftransV1_0015233; organism=Gossypium arboreum; type=contig; length=627bp
AAAATGATAAGAAATTTGTGTTCATCAACCATTAGAAAAACCCTTATATT
TTTCATCCCCGGTCTTAGCATAACCATTACATCATTTCCAGTCATAATAT
CCAAACACAGTAACATTACCAATGGCAACCCTGTCTAGCGTGAACCTCGT
AACCCCAAGAATCATAGCCAATGGACCAGACGTCCCAACCGTCAAGGTCC
CATGCCTTAACCGGCCTTGGAAAAGGGTATCCCCAATGAAGCTGCGTGTC
GGGCCTGTTAGAGCTGCACCGGATGGAATATCGGAGAAGGTGGAGAAAAG
CATAAAAGAGGCACAAGAGATGTGTTCGGATGATCCGGCGAGTGGCGAGT
GTGTGGCGGCTTGGGACGAAGTGGAAGAGCTGAGTGCGGCGGCTAGCCAC
GCTAGGGACAAGAAGAAAGACGATGATCCTTTGGAGAATTACTGTAAAGA
CAACCCGGAGACGGATGAGTGTCGTACTTATGATAATTGAAAATGTTTGT
TTTTTCTAGTTTCTTAGATTATAGTTGGATGTTAATCTGAAATATATTTT
ATTGTTGGTTTATATAGTTTGTTATAATGATGTAATCCTAAAATTATACA
CTCCTAGAAAAGAAAATGATATCAATT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR003823DUF_CP12