g.arboreum_cottongen_reftransV1_0008440, g.arboreum_cottongen_reftransV1_0008440 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0008440
Unique Name	g.arboreum_cottongen_reftransV1_0008440
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	547

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr11	chromosome	g.arboreum_cottongen_reftransV1_0008440:1..547 . Chr11:35196934..35198944 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: A0A0D2QFB8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G228200 PE=4 SV=1)

HSP 1 Score: 347.051 bits (889), Expect = 3.193e-110
Identity = 174/181 (96.13%), Postives = 177/181 (97.79%), Query Frame = -3

Query:    3 LTDKTIDPYLKLVEDAGLQAVCVESDIKDGSKEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPLSRPCSPLAQMKFQSFDEMPLAAVTDEANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASVM 545
            LTDKTIDPYLKLVEDAGLQAV VESDIK GSKEDEDAALKSLLAI LDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPLSRPCSPLAQM+FQSFDEMPLAAVTDEANGSQSGRKASLSI++LDVLSANELLDSALETARQVVSFSVS APIPYDQMKSQCEASVM
Sbjct:  654 LTDKTIDPYLKLVEDAGLQAVFVESDIKYGSKEDEDAALKSLLAIKLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPLSRPCSPLAQMEFQSFDEMPLAAVTDEANGSQSGRKASLSISKLDVLSANELLDSALETARQVVSFSVSPAPIPYDQMKSQCEASVM 834

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: A0A0D2S103_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G228200 PE=4 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 9.970e-110
Identity = 174/181 (96.13%), Postives = 177/181 (97.79%), Query Frame = -3

Query:    3 LTDKTIDPYLKLVEDAGLQAVCVESDIKDGSKEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPLSRPCSPLAQMKFQSFDEMPLAAVTDEANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASVM 545
            LTDKTIDPYLKLVEDAGLQAV VESDIK GSKEDEDAALKSLLAI LDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPLSRPCSPLAQM+FQSFDEMPLAAVTDEANGSQSGRKASLSI++LDVLSANELLDSALETARQVVSFSVS APIPYDQMKSQCEASVM
Sbjct:  697 LTDKTIDPYLKLVEDAGLQAVFVESDIKYGSKEDEDAALKSLLAIKLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPLSRPCSPLAQMEFQSFDEMPLAAVTDEANGSQSGRKASLSISKLDVLSANELLDSALETARQVVSFSVSPAPIPYDQMKSQCEASVM 877

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: A0A0D2RMB5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G143200 PE=4 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 1.322e-81
Identity = 141/194 (72.68%), Postives = 157/194 (80.93%), Query Frame = -3

Query:    3 LTDKTIDPYLKLVEDAGLQAVCVESDIKD---GSKEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPL----SRPCSPLAQMKFQSFDE-MPLAAVTD-----EANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASVM 545
            LTDK +DPYLKLVED  LQAV V+SD+     GSKED+ AA K+LLAI LDDLHLKETVISHFM KF KLSEDELSSIKKQ+LEGFSPDDAY  G PL     RPCSPLAQM+F +F+E MPLAA+TD     E NGSQSGRKASLS++ LDVLS NELLDS LETARQV SFSVS  PIPY+QM+SQCEA ++
Sbjct:  480 LTDKIVDPYLKLVEDVRLQAVRVKSDVDSVAYGSKEDDAAASKALLAIELDDLHLKETVISHFMIKFDKLSEDELSSIKKQILEGFSPDDAYPFGAPLFMETPRPCSPLAQMEFLAFEEIMPLAAITDDEAFPEGNGSQSGRKASLSLSTLDVLSVNELLDSVLETARQVASFSVSPTPIPYEQMRSQCEALII 673

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: A0A0B0PW40_GOSAR (Protein EFR3 cmp44E OS=Gossypium arboreum GN=F383_16377 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 2.489e-80
Identity = 141/194 (72.68%), Postives = 158/194 (81.44%), Query Frame = -3

Query:    3 LTDKTIDPYLKLVEDAGLQAVCVESDIKD---GSKEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPL----SRPCSPLAQMKFQSFDE-MPLAAVTD-----EANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASVM 545
            LTDK +DPYLKLVED  LQAV V+SD+     GSKED+ AA K+LLAI LDDLHLKETVISHFM K +KLSEDELSSIKKQ+LEGFSPDDAY  G PL     RPCSPLAQM+FQ+F+E MPLAA+TD     E NGSQSGRKASLS++ LDVLS NELLDS LETARQV SFSVS  PIPY+QM+SQCEA ++
Sbjct:  685 LTDKIVDPYLKLVEDVRLQAVRVKSDVDSVAYGSKEDDAAASKALLAIELDDLHLKETVISHFMIKIEKLSEDELSSIKKQILEGFSPDDAYPFGAPLFMETPRPCSPLAQMEFQAFEEIMPLAAITDDEAFPEGNGSQSGRKASLSLSTLDVLSVNELLDSVLETARQVASFSVSPTPIPYEQMRSQCEALII 878

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: A0A0D2UT13_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G143200 PE=4 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 4.680e-80
Identity = 141/194 (72.68%), Postives = 157/194 (80.93%), Query Frame = -3

Query:    3 LTDKTIDPYLKLVEDAGLQAVCVESDIKD---GSKEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPL----SRPCSPLAQMKFQSFDE-MPLAAVTD-----EANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASVM 545
            LTDK +DPYLKLVED  LQAV V+SD+     GSKED+ AA K+LLAI LDDLHLKETVISHFM KF KLSEDELSSIKKQ+LEGFSPDDAY  G PL     RPCSPLAQM+F +F+E MPLAA+TD     E NGSQSGRKASLS++ LDVLS NELLDS LETARQV SFSVS  PIPY+QM+SQCEA ++
Sbjct:  647 LTDKIVDPYLKLVEDVRLQAVRVKSDVDSVAYGSKEDDAAASKALLAIELDDLHLKETVISHFMIKFDKLSEDELSSIKKQILEGFSPDDAYPFGAPLFMETPRPCSPLAQMEFLAFEEIMPLAAITDDEAFPEGNGSQSGRKASLSLSTLDVLSVNELLDSVLETARQVASFSVSPTPIPYEQMRSQCEALII 840

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: A0A0D2VM62_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G143200 PE=4 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 6.963e-80
Identity = 141/194 (72.68%), Postives = 157/194 (80.93%), Query Frame = -3

Query:    3 LTDKTIDPYLKLVEDAGLQAVCVESDIKD---GSKEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPL----SRPCSPLAQMKFQSFDE-MPLAAVTD-----EANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASVM 545
            LTDK +DPYLKLVED  LQAV V+SD+     GSKED+ AA K+LLAI LDDLHLKETVISHFM KF KLSEDELSSIKKQ+LEGFSPDDAY  G PL     RPCSPLAQM+F +F+E MPLAA+TD     E NGSQSGRKASLS++ LDVLS NELLDS LETARQV SFSVS  PIPY+QM+SQCEA ++
Sbjct:  695 LTDKIVDPYLKLVEDVRLQAVRVKSDVDSVAYGSKEDDAAASKALLAIELDDLHLKETVISHFMIKFDKLSEDELSSIKKQILEGFSPDDAYPFGAPLFMETPRPCSPLAQMEFLAFEEIMPLAAITDDEAFPEGNGSQSGRKASLSLSTLDVLSVNELLDSVLETARQVASFSVSPTPIPYEQMRSQCEALII 888

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: A0A0D2T808_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G143200 PE=4 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 7.605e-80
Identity = 141/194 (72.68%), Postives = 157/194 (80.93%), Query Frame = -3

Query:    3 LTDKTIDPYLKLVEDAGLQAVCVESDIKD---GSKEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPL----SRPCSPLAQMKFQSFDE-MPLAAVTD-----EANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASVM 545
            LTDK +DPYLKLVED  LQAV V+SD+     GSKED+ AA K+LLAI LDDLHLKETVISHFM KF KLSEDELSSIKKQ+LEGFSPDDAY  G PL     RPCSPLAQM+F +F+E MPLAA+TD     E NGSQSGRKASLS++ LDVLS NELLDS LETARQV SFSVS  PIPY+QM+SQCEA ++
Sbjct:  696 LTDKIVDPYLKLVEDVRLQAVRVKSDVDSVAYGSKEDDAAASKALLAIELDDLHLKETVISHFMIKFDKLSEDELSSIKKQILEGFSPDDAYPFGAPLFMETPRPCSPLAQMEFLAFEEIMPLAAITDDEAFPEGNGSQSGRKASLSLSTLDVLSVNELLDSVLETARQVASFSVSPTPIPYEQMRSQCEALII 889

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: A0A061EKI1_THECC (ARM repeat superfamily protein isoform 6 OS=Theobroma cacao GN=TCM_020051 PE=4 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 1.033e-78
Identity = 142/193 (73.58%), Postives = 156/193 (80.83%), Query Frame = -3

Query:    6 LTDKTIDPYLKLVEDAGLQAVCVESDIKD---GSKEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPL----SRPCSPLAQMKFQSFDE-MPLAAVTDE-----ANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASV 545
            LTDKT+DPYLKLVED  LQAVCV+SD+     GSKED+ AA KSLL+I  D  HLKETVISH MT+F+KLSEDELSSI+KQLL+GFSPDDAY LG PL     RPCSPLAQM FQ+F+E +PLAA+TDE     ANGSQS RK SLSI+ LDVLS NELLDS LETARQV SFSVS  PIPYDQMKSQCEA V
Sbjct:  502 LTDKTVDPYLKLVEDIQLQAVCVKSDVDGVAYGSKEDDLAASKSLLSIEPDP-HLKETVISHLMTRFEKLSEDELSSIQKQLLQGFSPDDAYPLGAPLFMETPRPCSPLAQMGFQAFEEILPLAAMTDEEAFPEANGSQSDRKTSLSISTLDVLSVNELLDSVLETARQVASFSVSPTPIPYDQMKSQCEALV 693

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: V4VT24_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100186801mg PE=4 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 1.342e-77
Identity = 136/193 (70.47%), Postives = 156/193 (80.83%), Query Frame = -3

Query:    6 LTDKTIDPYLKLVEDAGLQAVCVES-DIKD--GSKEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPL----SRPCSPLAQMKFQSFDE-MPLAAVTD-----EANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASV 545
            +T+KT+DPYL+LVED  L AVC +S  +K   GS+EDEDAA+KSL+AI LDD HLKETVISHFMTKF+KLSEDELS +KKQLL GFSPDDAY LG PL     RPCSPLA+M+FQ+FDE MPLAA+TD     E NGSQS RK SLS+N LD+LS NELLDS LETARQV S+ V + P+PYDQMKSQCEA V
Sbjct:  528 VTEKTVDPYLELVEDIRLHAVCADSCKVKTAYGSQEDEDAAMKSLVAIELDDRHLKETVISHFMTKFEKLSEDELSDMKKQLLLGFSPDDAYPLGGPLFMETPRPCSPLARMEFQAFDEVMPLAALTDEEALPEPNGSQSDRKTSLSVNTLDILSVNELLDSVLETARQVASYPVVSTPVPYDQMKSQCEALV 720

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Match: A0A061ERF2_THECC (ARM repeat superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_020051 PE=4 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 3.343e-77
Identity = 142/193 (73.58%), Postives = 156/193 (80.83%), Query Frame = -3

Query:    6 LTDKTIDPYLKLVEDAGLQAVCVESDIKD---GSKEDEDAALKSLLAITLDDLHLKETVISHFMTKFKKLSEDELSSIKKQLLEGFSPDDAYSLGVPL----SRPCSPLAQMKFQSFDE-MPLAAVTDE-----ANGSQSGRKASLSINELDVLSANELLDSALETARQVVSFSVSAAPIPYDQMKSQCEASV 545
            LTDKT+DPYLKLVED  LQAVCV+SD+     GSKED+ AA KSLL+I  D  HLKETVISH MT+F+KLSEDELSSI+KQLL+GFSPDDAY LG PL     RPCSPLAQM FQ+F+E +PLAA+TDE     ANGSQS RK SLSI+ LDVLS NELLDS LETARQV SFSVS  PIPYDQMKSQCEA V
Sbjct:  707 LTDKTVDPYLKLVEDIQLQAVCVKSDVDGVAYGSKEDDLAASKSLLSIEPDP-HLKETVISHLMTRFEKLSEDELSSIQKQLLQGFSPDDAYPLGAPLFMETPRPCSPLAQMGFQAFEEILPLAAMTDEEAFPEANGSQSDRKTSLSISTLDVLSVNELLDSVLETARQVASFSVSPTPIPYDQMKSQCEALV 898

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2QFB8_GOSRA	3.193e-110	96.13	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2S103_GOSRA	9.970e-110	96.13	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2RMB5_GOSRA	1.322e-81	72.68	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B0PW40_GOSAR	2.489e-80	72.68	Protein EFR3 cmp44E OS=Gossypium arboreum GN=F383_...	[more]
A0A0D2UT13_GOSRA	4.680e-80	72.68	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2VM62_GOSRA	6.963e-80	72.68	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2T808_GOSRA	7.605e-80	72.68	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061EKI1_THECC	1.033e-78	73.58	ARM repeat superfamily protein isoform 6 OS=Theobr...	[more]
V4VT24_9ROSI	1.342e-77	70.47	Uncharacterized protein (Fragment) OS=Citrus cleme...	[more]
A0A061ERF2_THECC	3.343e-77	73.58	ARM repeat superfamily protein isoform 1 OS=Theobr...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0008440 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12444	UNCHARACTERIZED	coord: 1..181
None	No IPR available	PANTHER	PTHR12444:SF2	ARM REPEAT SUPERFAMILY PROTEIN	coord: 1..181

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0008440 ID=g.arboreum_cottongen_reftransV1_0008440; Name=g.arboreum_cottongen_reftransV1_0008440; organism=Gossypium arboreum; type=contig; length=547bp
CCCATTACACTAGCTTCACACTGACTCTTCATCTGGTCATAAGGAATAGG
TGCTGCAGAAACCGAAAAGCTTACAACTTGCCGGGCAGTTTCCAGAGCCG
AATCCAATAGCTCATTGGCACTTAAGACATCTAGTTCATTTATGGATAAT
GATGCTTTGCGACCTGACTGACTTCCATTGGCTTCATCTGTTACAGCAGC
TAGAGGCATCTCATCAAATGACTGAAACTTCATCTGCGCAAGAGGAGAAC
ATGGTCTTGACAACGGAACACCTAATGAATATGCATCATCGGGTGAAAAG
CCCTCAAGAAGCTGTTTCTTTATACTTGATAATTCATCCTCTGATAATTT
CTTAAATTTGGTCATGAAATGGGATATGACAGTCTCCTTCAAATGGAGGT
CATCAAGCGTTATTGCCAATAGGGATTTTAATGCAGCATCTTCATCTTCT
TTTGATCCATCTTTTATATCAGATTCCACACATACAGCCTGAAGTCCAGC
ATCTTCAACTAATTTGAGATAAGGATCAATCGTTTTATCTGTCAGAG

Search form

g.arboreum_cottongen_reftransV1_0008440, g.arboreum_cottongen_reftransV1_0008440 (contig) Gossypium arboreum

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