g.arboreum_cottongen_reftransV1_0000741, g.arboreum_cottongen_reftransV1_0000741 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0000741
Unique Nameg.arboreum_cottongen_reftransV1_0000741
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length312
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr11chromosomeg.arboreum_cottongen_reftransV1_0000741:1..312 .
Chr11:10855224..10855535 -
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: A0A0B0NVK0_GOSAR (Thyroid adenoma-associated protein OS=Gossypium arboreum GN=F383_09235 PE=4 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.488e-62
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 2 
Query:    2 LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCFTLTDKGQKTAGYNES 310
            LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCFTLTDKGQKTAGYNES
Sbjct:  996 LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCFTLTDKGQKTAGYNES 1098
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: A0A0B0P009_GOSAR (Thyroid adenoma-associated protein OS=Gossypium arboreum GN=F383_09235 PE=4 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 2.353e-62
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 2 
Query:    2 LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCFTLTDKGQKTAGYNES 310
            LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCFTLTDKGQKTAGYNES
Sbjct: 1151 LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCFTLTDKGQKTAGYNES 1253
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: A0A0D2RP27_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G018000 PE=4 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 2.566e-55
Identity = 98/103 (95.15%), Postives = 98/103 (95.15%), Query Frame = 2 
Query:    2 LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCFTLTDKGQKTAGYNES 310
            LELEKNHRCMY ILRIIFT NLLKFQE SEEKSDGTLYVGALD DSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCF LTDKGQKTAGYNES
Sbjct: 1380 LELEKNHRCMYRILRIIFTSNLLKFQE-SEEKSDGTLYVGALDYDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCFILTDKGQKTAGYNES 1481
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: A0A0D2Q1Y4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G018000 PE=4 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 2.599e-55
Identity = 98/103 (95.15%), Postives = 98/103 (95.15%), Query Frame = 2 
Query:    2 LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCFTLTDKGQKTAGYNES 310
            LELEKNHRCMY ILRIIFT NLLKFQE SEEKSDGTLYVGALD DSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCF LTDKGQKTAGYNES
Sbjct: 1369 LELEKNHRCMYRILRIIFTSNLLKFQE-SEEKSDGTLYVGALDYDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCFILTDKGQKTAGYNES 1470
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: A0A0D2NKI9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G018000 PE=4 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 3.270e-55
Identity = 98/103 (95.15%), Postives = 98/103 (95.15%), Query Frame = 2 
Query:    2 LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCFTLTDKGQKTAGYNES 310
            LELEKNHRCMY ILRIIFT NLLKFQE SEEKSDGTLYVGALD DSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCF LTDKGQKTAGYNES
Sbjct: 1770 LELEKNHRCMYRILRIIFTSNLLKFQE-SEEKSDGTLYVGALDYDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCFILTDKGQKTAGYNES 1871
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: A0A0D2SQU0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G018000 PE=4 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 4.226e-55
Identity = 98/103 (95.15%), Postives = 98/103 (95.15%), Query Frame = 2 
Query:    2 LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCFTLTDKGQKTAGYNES 310
            LELEKNHRCMY ILRIIFT NLLKFQE SEEKSDGTLYVGALD DSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCF LTDKGQKTAGYNES
Sbjct: 1770 LELEKNHRCMYRILRIIFTSNLLKFQE-SEEKSDGTLYVGALDYDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCFILTDKGQKTAGYNES 1871
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: A0A061EM88_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_018498 PE=4 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 2.762e-46
Identity = 80/103 (77.67%), Postives = 89/103 (86.41%), Query Frame = 2 
Query:    2 LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCFTLTDKGQKTAGYNES 310
            LE+EKNHRC Y+IL+IIFTWN LKFQEL +EKSD TLYVGALDCDSV QLWDRLIS+ KLTRHAKT+E L+CCLAICV+ F RLFS F LTDKGQKT   +ES
Sbjct: 1770 LEVEKNHRCTYYILKIIFTWNFLKFQELCQEKSDETLYVGALDCDSVFQLWDRLISMYKLTRHAKTRETLVCCLAICVKHFARLFSSFILTDKGQKTTKCDES 1872
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: M5WS65_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000039mg PE=4 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.511e-29
Identity = 54/92 (58.70%), Postives = 72/92 (78.26%), Query Frame = 2 
Query:    2 LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCFTLTD 277
            L++EKNHRC Y+ILRI+FTWN L+FQ+  +EK   T+Y+G ++ DSV  LWD+LISL KLTRHAK +E LICC+ ICV++F  LF+   L+D
Sbjct: 1742 LDVEKNHRCSYYILRILFTWNALQFQKPRDEKCTETIYIGGMEYDSVFLLWDKLISLYKLTRHAKARETLICCMGICVKRFAGLFTTSVLSD 1833
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: V4SZ56_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100108892mg PE=4 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.011e-29
Identity = 56/103 (54.37%), Postives = 76/103 (73.79%), Query Frame = 2 
Query:    2 LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCFTLTDKGQKTAGYNES 310
            LELEKN RC  ++LR++FTWNLL+FQ+L       T++VG++DCDSV+Q WDRL+S  +LTRHAK +E LI C+AIC+R+F  LF+   L D  +KT   +ES
Sbjct:  795 LELEKNPRCTNYVLRLLFTWNLLQFQKLGSNVCTETIFVGSVDCDSVVQFWDRLMSSYELTRHAKIKESLINCMAICIRRFANLFTSSILVDARKKTIEISES 897
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Match: A0A067G2B3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g000103mg PE=4 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.046e-28
Identity = 56/103 (54.37%), Postives = 76/103 (73.79%), Query Frame = 2 
Query:    2 LELEKNHRCMYHILRIIFTWNLLKFQELSEEKSDGTLYVGALDCDSVLQLWDRLISLLKLTRHAKTQEILICCLAICVRQFIRLFSCFTLTDKGQKTAGYNES 310
            LELEKN RC  ++LR++FTWNLL+FQ+L       T++VG++DCDSV+Q WDRL+S  +LTRHAK +E LI C+AIC+R+F  LF+   L D  +KT   +ES
Sbjct: 1774 LELEKNPRCTNYVLRLLFTWNLLQFQKLGSNVCTETIFVGSVDCDSVVQFWDRLMSSYELTRHAKIKESLINCMAICIRRFANLFTSSILVDARKKTIEISES 1876
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0NVK0_GOSAR1.488e-62100.00Thyroid adenoma-associated protein OS=Gossypium ar... [more]
A0A0B0P009_GOSAR2.353e-62100.00Thyroid adenoma-associated protein OS=Gossypium ar... [more]
A0A0D2RP27_GOSRA2.566e-5595.15Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2Q1Y4_GOSRA2.599e-5595.15Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2NKI9_GOSRA3.270e-5595.15Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2SQU0_GOSRA4.226e-5595.15Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061EM88_THECC2.762e-4677.67Uncharacterized protein OS=Theobroma cacao GN=TCM_... [more]
M5WS65_PRUPE2.511e-2958.70Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
V4SZ56_9ROSI9.011e-2954.37Uncharacterized protein (Fragment) OS=Citrus cleme... [more]
A0A067G2B3_CITSI1.046e-2854.37Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0000741 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0000741 ID=g.arboreum_cottongen_reftransV1_0000741; Name=g.arboreum_cottongen_reftransV1_0000741; organism=Gossypium arboreum; type=contig; length=312bp
CTTGGAACTGGAGAAGAATCATCGGTGTATGTATCACATTCTGAGGATTA
TTTTCACTTGGAACTTGCTGAAGTTTCAGGAATTAAGTGAAGAAAAGAGT
GATGGAACCCTTTATGTTGGTGCCTTGGATTGTGATTCTGTATTACAGCT
TTGGGATAGGCTGATATCCTTGCTCAAGCTCACTCGACATGCTAAAACAC
AAGAAATACTCATTTGTTGTCTGGCAATATGCGTAAGGCAATTTATAAGG
CTGTTTAGTTGTTTTACTCTTACTGATAAGGGGCAGAAGACTGCTGGATA
TAATGAATCAGG
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