g.arboreum_cottongen_reftransV1_0018831, g.arboreum_cottongen_reftransV1_0018831 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0018831
Unique Nameg.arboreum_cottongen_reftransV1_0018831
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length703
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr13chromosomeg.arboreum_cottongen_reftransV1_0018831:1..703 .
Chr13:72074815..72075725 -
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0018831 vs. ExPASy TrEMBL
Match: A0A0D2PXM7_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_005G220000 PE=4 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.800e-10
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = -3 
Query:  315 LPLGVKVLIDVAVMDDLQVVEVFQHEAV*LILGVHLLKTQMLMNDLAHGIGIMETLS 485
            LPLGVKVL+D AVMD LQV+ VF  +A  LI G HLL+T   MNDLA GIGI   L+
Sbjct:  245 LPLGVKVLVDGAVMDGLQVLGVFHRKAALLIHGAHLLETHRSMNDLADGIGIPGDLA 301
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BLAST of g.arboreum_cottongen_reftransV1_0018831 vs. ExPASy TrEMBL
Match: A0A0C3MLP8_9PROT (Uncharacterized protein (Fragment) OS=Nitrosospira sp. NpAV GN=SQ11_16100 PE=4 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 3.445e-7
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = -3 
Query:  567 VVEVTTGMNVIAIVGKTEIXXXXXXXXXXXLTILKAEEEAAMMMI 701
            VVEVTTGMNVIAIVGKTEILGAVAGV VLVLTILKAEEEAAMMMI
Sbjct:   18 VVEVTTGMNVIAIVGKTEILGAVAGVVVLVLTILKAEEEAAMMMI 62
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0018831 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0D2PXM7_GOSRA1.800e-1063.16Uncharacterized protein (Fragment) OS=Gossypium ra... [more]
A0A0C3MLP8_9PROT3.445e-797.78Uncharacterized protein (Fragment) OS=Nitrosospira... [more]
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BLAST of g.arboreum_cottongen_reftransV1_0018831 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..39
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 40..58
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availableTMHMMTMhelixcoord: 20..39

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0018831 ID=g.arboreum_cottongen_reftransV1_0018831; Name=g.arboreum_cottongen_reftransV1_0018831; organism=Gossypium arboreum; type=contig; length=703bp
TTAGAAAATAAACCATAAAACACACACACACACGCATGCACACTGCCCCT
TGCATAATTAGAAAGACAAATATAAAGCAAAATCAGAGCCAAATATGAGA
TCTGAAGAGAGGATGGCGACAAACTACAATAACAAACTTACATCACAAAA
CCTTTGATGAGTAATGAAACATCAAGCTAAAAACTACATAAGTTCAGATG
CCATAACAAAGCTGAAGTCAATTAAAACACCAAAACCCCAGTCCTACCAA
TACTAGAAAATGCATGATACTTGGATGTCCTCAACACTAGCAACATATCA
ATGAGAAACATGCTACTCAAAGTCTCCATAATTCCGATGCCATGAGCAAG
ATCATTCATCAACATCTGAGTTTTGAGGAGATGGACTCCGAGAATCAGCT
AGACGGCCTCGTGTTGAAACACTTCGACGACTTGGAGATCGTCCATCACG
GCTACGTCTATCAGGACTTTCACCCCTAGGGGGAGACTTACGAGGGGAAG
TACTCTTCCGAGGACTAGGGCTGCGGCGAGCAGGAGAAGCACTTATCGAT
CGACTAACACTCCGCCTATCATCATCATAGCGGCCTCTTCCTCGGCCTTT
AGAATAGTCAGGACTAGCACTGCGACTCCTGCTACGGCGCCGAGAATCTC
TGTCTTTCCCACGATAGCGATCACGTTCATACCTGTCGTGACTTCTACTA
CGA
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