g.arboreum_cottongen_reftransV1_0019949, g.arboreum_cottongen_reftransV1_0019949 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: A0A0D2T5V1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G101200 PE=4 SV=1) HSP 1 Score: 278.1 bits (710), Expect = 4.712e-90 Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = -3 Query: 2 FGCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 400 FGCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIG RLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA Sbjct: 111 FGCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGVRLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 243
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: A0A0B0MHF3_GOSAR (Transmembrane 53 OS=Gossypium arboreum GN=F383_23821 PE=4 SV=1) HSP 1 Score: 258.84 bits (660), Expect = 1.525e-82 Identity = 126/133 (94.74%), Postives = 126/133 (94.74%), Query Frame = -3 Query: 2 FGCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 400 FGCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFL FQRREGLKEKIRGVIIDSGAADPLNPKVWAA Sbjct: 111 FGCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFL-------FQRREGLKEKIRGVIIDSGAADPLNPKVWAA 236
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: A0A061DFL9_THECC (Alpha/beta-hydrolase domain-containing protein, putative OS=Theobroma cacao GN=TCM_000352 PE=4 SV=1) HSP 1 Score: 242.276 bits (617), Expect = 6.077e-76 Identity = 112/132 (84.85%), Postives = 121/132 (91.67%), Query Frame = -3 Query: 2 GCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 397 GC+DKV+ VVLLGWLGAKTKHLKRYVEW N RGIHAVTF+V+VKELLWFD+G RLEQRVSELGNELA+WV+E+EEDGRERC IFH FSNTGW YGSLLD FQ REGLKEKIRGVIIDSG+ DPLNPKVWAA Sbjct: 118 GCKDKVITVVLLGWLGAKTKHLKRYVEWYNSRGIHAVTFVVEVKELLWFDLGGRLEQRVSELGNELARWVLEKEEDGRERCLIFHTFSNTGWLTYGSLLDRFQGREGLKEKIRGVIIDSGSGDPLNPKVWAA 249
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: A0A067K690_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14963 PE=4 SV=1) HSP 1 Score: 210.69 bits (535), Expect = 1.248e-63 Identity = 90/132 (68.18%), Postives = 105/132 (79.55%), Query Frame = -3 Query: 2 GCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 397 G +D +V VVLLGWLGAK KHLK+YVEW N RGIHAVTF++ V ELLWFD+G R+E+R++ L NEL WV E EEDGRERC IFH FSNTGWF+YG LD Q RE LKEKI+G ++DSG +P NPKVWAA Sbjct: 121 GTKDPIVTVVLLGWLGAKKKHLKKYVEWYNSRGIHAVTFVIGVGELLWFDLGERVEKRITALANELISWVSEREEDGRERCLIFHTFSNTGWFVYGYFLDILQGREDLKEKIKGCVVDSGGGEPFNPKVWAA 252
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: M5W995_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006582mg PE=4 SV=1) HSP 1 Score: 207.223 bits (526), Expect = 2.382e-62 Identity = 90/133 (67.67%), Postives = 110/133 (82.71%), Query Frame = -3 Query: 2 FGCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 400 FG + + V VVLLGWLGAKTKHLK+YVEW N RGIHAVTF+VD +E+LWFD+G R+E+RVS+L +EL WV E EDGRERC +FH FSNTGWF+YG++L+ Q R+ L EKI+G I+DSGAA+P NPKVWAA Sbjct: 118 FGTQKREVTVVLLGWLGAKTKHLKKYVEWYNSRGIHAVTFVVDAREVLWFDLGHRVEKRVSDLAHELVSWVEERVEDGRERCLLFHTFSNTGWFVYGAILEILQGRQDLMEKIKGCIVDSGAAEPFNPKVWAA 250
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: A0A0D2T940_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G050100 PE=4 SV=1) HSP 1 Score: 199.519 bits (506), Expect = 2.022e-60 Identity = 91/133 (68.42%), Postives = 110/133 (82.71%), Query Frame = -3 Query: 2 FGCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 400 G +DK++ VVLLGWLGA KHL RYVEW N RGIHAVTFLV++K+LL D + L++R++EL N LA W E+E+DGRERCFIFH FSNTGW +YGS+++ FQRREGLKE I+GVI DSG+ADPLNPKVWAA Sbjct: 117 LGNKDKIITVVLLGWLGATNKHLNRYVEWYNSRGIHAVTFLVELKDLLCLDPVSMLDRRIAELANGLATWGSEKEDDGRERCFIFHTFSNTGWLVYGSVIERFQRREGLKEMIKGVIFDSGSADPLNPKVWAA 249
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: A0A0D2SEA3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G050100 PE=4 SV=1) HSP 1 Score: 199.519 bits (506), Expect = 6.595e-60 Identity = 91/133 (68.42%), Postives = 110/133 (82.71%), Query Frame = -3 Query: 2 FGCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 400 G +DK++ VVLLGWLGA KHL RYVEW N RGIHAVTFLV++K+LL D + L++R++EL N LA W E+E+DGRERCFIFH FSNTGW +YGS+++ FQRREGLKE I+GVI DSG+ADPLNPKVWAA Sbjct: 117 LGNKDKIITVVLLGWLGATNKHLNRYVEWYNSRGIHAVTFLVELKDLLCLDPVSMLDRRIAELANGLATWGSEKEDDGRERCFIFHTFSNTGWLVYGSVIERFQRREGLKEMIKGVIFDSGSADPLNPKVWAA 249
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: A0A0D2T938_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G050100 PE=4 SV=1) HSP 1 Score: 200.29 bits (508), Expect = 1.101e-59 Identity = 91/133 (68.42%), Postives = 110/133 (82.71%), Query Frame = -3 Query: 2 FGCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 400 G +DK++ VVLLGWLGA KHL RYVEW N RGIHAVTFLV++K+LL D + L++R++EL N LA W E+E+DGRERCFIFH FSNTGW +YGS+++ FQRREGLKE I+GVI DSG+ADPLNPKVWAA Sbjct: 117 LGNKDKIITVVLLGWLGATNKHLNRYVEWYNSRGIHAVTFLVELKDLLCLDPVSMLDRRIAELANGLATWGSEKEDDGRERCFIFHTFSNTGWLVYGSVIERFQRREGLKEMIKGVIFDSGSADPLNPKVWAA 249
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: A0A0D2QLP6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G050100 PE=4 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 5.486e-58 Identity = 88/130 (67.69%), Postives = 107/130 (82.31%), Query Frame = -3 Query: 11 FGCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKV 400 G +DK++ VVLLGWLGA KHL RYVEW N RGIHAVTFLV++K+LL D + L++R++EL N LA W E+E+DGRERCFIFH FSNTGW +YGS+++ FQRREGLKE I+GVI DSG+ADPLNPKV Sbjct: 117 LGNKDKIITVVLLGWLGATNKHLNRYVEWYNSRGIHAVTFLVELKDLLCLDPVSMLDRRIAELANGLATWGSEKEDDGRERCFIFHTFSNTGWLVYGSVIERFQRREGLKEMIKGVIFDSGSADPLNPKV 246
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: M4F817_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra037228 PE=4 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 9.624e-58 Identity = 86/133 (64.66%), Postives = 106/133 (79.70%), Query Frame = -3 Query: 2 FGCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 400 FG K VVLLGWLGA+ KHL+RYVEW N RGI+AVTF VDV++L+ D+G RLE+R+ E GNEL KWV E+EE GRE+C +FH+FSNTGW +YG+LL+SF R+ L EKI+G IIDSG ADPL+ K+WAA Sbjct: 119 FGESGKETTVVLLGWLGARAKHLRRYVEWYNSRGINAVTFTVDVRDLVRLDLGRRLERRIDEFGNELVKWVSEKEEGGREKCLVFHSFSNTGWLVYGTLLESFVGRQELVEKIKGCIIDSGGADPLDTKIWAA 251
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy Swiss-Prot
Match: TMM53_HUMAN (Transmembrane protein 53 OS=Homo sapiens GN=TMEM53 PE=2 SV=1) HSP 1 Score: 50.447 bits (119), Expect = 5.272e-7 Identity = 38/121 (31.40%), Postives = 57/121 (47.11%), Query Frame = -3 Query: 29 IVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTF-----LVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAAD 376 +V+LLGW G K K+L +Y + RG + + +V E L L Q++ EL L + +E+E +FH FSN G LY +L+ Q R + ++ G I DS D Sbjct: 37 VVILLGWGGCKDKNLAKYSAIYHKRGCIVIRYTAPWHMVFFSESLGIPSLRVLAQKLLEL---LFDYEIEKEP------LLFHVFSNGGVMLYRYVLELLQTRRFCRLRVVGTIFDSAPGD 148 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0019949 ID=g.arboreum_cottongen_reftransV1_0019949; Name=g.arboreum_cottongen_reftransV1_0019949; organism=Gossypium arboreum; type=contig; length=402bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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