g.arboreum_cottongen_reftransV1_0019949, g.arboreum_cottongen_reftransV1_0019949 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0019949
Unique Nameg.arboreum_cottongen_reftransV1_0019949
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length402
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr9chromosomeg.arboreum_cottongen_reftransV1_0019949:12..402 .
Chr9:56149163..56149749 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: A0A0D2T5V1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G101200 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 4.712e-90
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = -3
Query:    2 FGCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 400
            FGCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIG RLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA
Sbjct:  111 FGCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGVRLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 243          
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: A0A0B0MHF3_GOSAR (Transmembrane 53 OS=Gossypium arboreum GN=F383_23821 PE=4 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 1.525e-82
Identity = 126/133 (94.74%), Postives = 126/133 (94.74%), Query Frame = -3
Query:    2 FGCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 400
            FGCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFL       FQRREGLKEKIRGVIIDSGAADPLNPKVWAA
Sbjct:  111 FGCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFL-------FQRREGLKEKIRGVIIDSGAADPLNPKVWAA 236          
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: A0A061DFL9_THECC (Alpha/beta-hydrolase domain-containing protein, putative OS=Theobroma cacao GN=TCM_000352 PE=4 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 6.077e-76
Identity = 112/132 (84.85%), Postives = 121/132 (91.67%), Query Frame = -3
Query:    2 GCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 397
            GC+DKV+ VVLLGWLGAKTKHLKRYVEW N RGIHAVTF+V+VKELLWFD+G RLEQRVSELGNELA+WV+E+EEDGRERC IFH FSNTGW  YGSLLD FQ REGLKEKIRGVIIDSG+ DPLNPKVWAA
Sbjct:  118 GCKDKVITVVLLGWLGAKTKHLKRYVEWYNSRGIHAVTFVVEVKELLWFDLGGRLEQRVSELGNELARWVLEKEEDGRERCLIFHTFSNTGWLTYGSLLDRFQGREGLKEKIRGVIIDSGSGDPLNPKVWAA 249          
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: A0A067K690_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14963 PE=4 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 1.248e-63
Identity = 90/132 (68.18%), Postives = 105/132 (79.55%), Query Frame = -3
Query:    2 GCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 397
            G +D +V VVLLGWLGAK KHLK+YVEW N RGIHAVTF++ V ELLWFD+G R+E+R++ L NEL  WV E EEDGRERC IFH FSNTGWF+YG  LD  Q RE LKEKI+G ++DSG  +P NPKVWAA
Sbjct:  121 GTKDPIVTVVLLGWLGAKKKHLKKYVEWYNSRGIHAVTFVIGVGELLWFDLGERVEKRITALANELISWVSEREEDGRERCLIFHTFSNTGWFVYGYFLDILQGREDLKEKIKGCVVDSGGGEPFNPKVWAA 252          
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: M5W995_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006582mg PE=4 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 2.382e-62
Identity = 90/133 (67.67%), Postives = 110/133 (82.71%), Query Frame = -3
Query:    2 FGCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 400
            FG + + V VVLLGWLGAKTKHLK+YVEW N RGIHAVTF+VD +E+LWFD+G R+E+RVS+L +EL  WV E  EDGRERC +FH FSNTGWF+YG++L+  Q R+ L EKI+G I+DSGAA+P NPKVWAA
Sbjct:  118 FGTQKREVTVVLLGWLGAKTKHLKKYVEWYNSRGIHAVTFVVDAREVLWFDLGHRVEKRVSDLAHELVSWVEERVEDGRERCLLFHTFSNTGWFVYGAILEILQGRQDLMEKIKGCIVDSGAAEPFNPKVWAA 250          
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: A0A0D2T940_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G050100 PE=4 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.022e-60
Identity = 91/133 (68.42%), Postives = 110/133 (82.71%), Query Frame = -3
Query:    2 FGCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 400
             G +DK++ VVLLGWLGA  KHL RYVEW N RGIHAVTFLV++K+LL  D  + L++R++EL N LA W  E+E+DGRERCFIFH FSNTGW +YGS+++ FQRREGLKE I+GVI DSG+ADPLNPKVWAA
Sbjct:  117 LGNKDKIITVVLLGWLGATNKHLNRYVEWYNSRGIHAVTFLVELKDLLCLDPVSMLDRRIAELANGLATWGSEKEDDGRERCFIFHTFSNTGWLVYGSVIERFQRREGLKEMIKGVIFDSGSADPLNPKVWAA 249          
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: A0A0D2SEA3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G050100 PE=4 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 6.595e-60
Identity = 91/133 (68.42%), Postives = 110/133 (82.71%), Query Frame = -3
Query:    2 FGCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 400
             G +DK++ VVLLGWLGA  KHL RYVEW N RGIHAVTFLV++K+LL  D  + L++R++EL N LA W  E+E+DGRERCFIFH FSNTGW +YGS+++ FQRREGLKE I+GVI DSG+ADPLNPKVWAA
Sbjct:  117 LGNKDKIITVVLLGWLGATNKHLNRYVEWYNSRGIHAVTFLVELKDLLCLDPVSMLDRRIAELANGLATWGSEKEDDGRERCFIFHTFSNTGWLVYGSVIERFQRREGLKEMIKGVIFDSGSADPLNPKVWAA 249          
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: A0A0D2T938_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G050100 PE=4 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.101e-59
Identity = 91/133 (68.42%), Postives = 110/133 (82.71%), Query Frame = -3
Query:    2 FGCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 400
             G +DK++ VVLLGWLGA  KHL RYVEW N RGIHAVTFLV++K+LL  D  + L++R++EL N LA W  E+E+DGRERCFIFH FSNTGW +YGS+++ FQRREGLKE I+GVI DSG+ADPLNPKVWAA
Sbjct:  117 LGNKDKIITVVLLGWLGATNKHLNRYVEWYNSRGIHAVTFLVELKDLLCLDPVSMLDRRIAELANGLATWGSEKEDDGRERCFIFHTFSNTGWLVYGSVIERFQRREGLKEMIKGVIFDSGSADPLNPKVWAA 249          
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: A0A0D2QLP6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G050100 PE=4 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 5.486e-58
Identity = 88/130 (67.69%), Postives = 107/130 (82.31%), Query Frame = -3
Query:   11 FGCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKV 400
             G +DK++ VVLLGWLGA  KHL RYVEW N RGIHAVTFLV++K+LL  D  + L++R++EL N LA W  E+E+DGRERCFIFH FSNTGW +YGS+++ FQRREGLKE I+GVI DSG+ADPLNPKV
Sbjct:  117 LGNKDKIITVVLLGWLGATNKHLNRYVEWYNSRGIHAVTFLVELKDLLCLDPVSMLDRRIAELANGLATWGSEKEDDGRERCFIFHTFSNTGWLVYGSVIERFQRREGLKEMIKGVIFDSGSADPLNPKV 246          
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Match: M4F817_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra037228 PE=4 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 9.624e-58
Identity = 86/133 (64.66%), Postives = 106/133 (79.70%), Query Frame = -3
Query:    2 FGCRDKVVIVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTFLVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAADPLNPKVWAA 400
            FG   K   VVLLGWLGA+ KHL+RYVEW N RGI+AVTF VDV++L+  D+G RLE+R+ E GNEL KWV E+EE GRE+C +FH+FSNTGW +YG+LL+SF  R+ L EKI+G IIDSG ADPL+ K+WAA
Sbjct:  119 FGESGKETTVVLLGWLGARAKHLRRYVEWYNSRGINAVTFTVDVRDLVRLDLGRRLERRIDEFGNELVKWVSEKEEGGREKCLVFHSFSNTGWLVYGTLLESFVGRQELVEKIKGCIIDSGGADPLDTKIWAA 251          
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy Swiss-Prot
Match: TMM53_HUMAN (Transmembrane protein 53 OS=Homo sapiens GN=TMEM53 PE=2 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 5.272e-7
Identity = 38/121 (31.40%), Postives = 57/121 (47.11%), Query Frame = -3
Query:   29 IVVLLGWLGAKTKHLKRYVEWNNLRGIHAVTF-----LVDVKELLWFDIGARLEQRVSELGNELAKWVMEEEEDGRERCFIFHAFSNTGWFLYGSLLDSFQRREGLKEKIRGVIIDSGAAD 376
            +V+LLGW G K K+L +Y    + RG   + +     +V   E L       L Q++ EL   L  + +E+E        +FH FSN G  LY  +L+  Q R   + ++ G I DS   D
Sbjct:   37 VVILLGWGGCKDKNLAKYSAIYHKRGCIVIRYTAPWHMVFFSESLGIPSLRVLAQKLLEL---LFDYEIEKEP------LLFHVFSNGGVMLYRYVLELLQTRRFCRLRVVGTIFDSAPGD 148          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2T5V1_GOSRA4.712e-9099.25Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B0MHF3_GOSAR1.525e-8294.74Transmembrane 53 OS=Gossypium arboreum GN=F383_238... [more]
A0A061DFL9_THECC6.077e-7684.85Alpha/beta-hydrolase domain-containing protein, pu... [more]
A0A067K690_JATCU1.248e-6368.18Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
M5W995_PRUPE2.382e-6267.67Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A0D2T940_GOSRA2.022e-6068.42Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2SEA3_GOSRA6.595e-6068.42Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2T938_GOSRA1.101e-5968.42Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2QLP6_GOSRA5.486e-5867.69Uncharacterized protein OS=Gossypium raimondii GN=... [more]
M4F817_BRARP9.624e-5864.66Uncharacterized protein OS=Brassica rapa subsp. pe... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0019949 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TMM53_HUMAN5.272e-731.40Transmembrane protein 53 OS=Homo sapiens GN=TMEM53... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008547Protein of unknown function DUF829, TMEM53PFAMPF05705DUF829coord: 1..112
e-value: 3.8E-23
score: 82.5
IPR008547Protein of unknown function DUF829, TMEM53PANTHERPTHR12265UNCHARACTERIZEDcoord: 1..121
NoneNo IPR availablePANTHERPTHR12265:SF11SUBFAMILY NOT NAMEDcoord: 1..121

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0019949 ID=g.arboreum_cottongen_reftransV1_0019949; Name=g.arboreum_cottongen_reftransV1_0019949; organism=Gossypium arboreum; type=contig; length=402bp
CGGCTGCCCAGACCTTAGGATTTAAAGGGTCAGCTGCTCCTGAATCAATA
ATTACTCCTCTTATCTTCTCTTTCAATCCCTCTCTTCTCTGAAAGCTGTC
AAGAAGTGAACCATATAGGAACCAGCCAGTGTTGCTAAAAGCATGGAAAA
TGAAGCACCTTTCACGACCATCTTCCTCTTCTTCCATAACCCACTTGGCC
AACTCATTTCCCAATTCAGATACACGCTGCTCAAGCCTTGCACCAATATC
AAACCATAGCAATTCCTTAACATCTACTAAAAAAGTAACCGCGTGGATTC
CTCTTAAATTGTTCCATTCCACATATCGCTTTAAATGCTTGGTTTTAGCC
CCAAGCCATCCCAAAAGAACCACTATTACGACCTTGTCCCTGCATCCAAA
AG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR008547DUF829_TMEM53