g.arboreum_cottongen_reftransV1_0011612, g.arboreum_cottongen_reftransV1_0011612 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0011612
Unique Nameg.arboreum_cottongen_reftransV1_0011612
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length344
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr10chromosomeg.arboreum_cottongen_reftransV1_0011612:1..344 .
Chr10:16710784..16711485 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: A0A0D2QK31_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G209600 PE=4 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 8.526e-57
Identity = 110/111 (99.10%), Postives = 111/111 (100.00%), Query Frame = -2
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGT+IGKQTVRLSWGRNPTNKQFRADYGNQWGGAYYGGAVYDGYGYAFPPPHNPGIYTAAYGVYPFYGSYQQQVN
Sbjct:  322 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTIIGKQTVRLSWGRNPTNKQFRADYGNQWGGAYYGGAVYDGYGYAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 432          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: W9R830_9ROSA (Polyadenylate-binding protein RBP47C OS=Morus notabilis GN=L484_026088 PE=4 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.743e-47
Identity = 94/111 (84.68%), Postives = 101/111 (90.99%), Query Frame = -2
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            FSQYGEIVSVKIP GKGCGFVQFA RNNAEEALQKLNGT+IGKQTVRLSWGRNP NKQ+R D+GNQWGGAYYGG VYDGYGYA PPPH+P +Y A+YG YP YGS+QQQVN
Sbjct:  313 FSQYGEIVSVKIPTGKGCGFVQFANRNNAEEALQKLNGTVIGKQTVRLSWGRNPANKQYRGDFGNQWGGAYYGGQVYDGYGYALPPPHDPSMYAASYGAYPLYGSHQQQVN 423          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: A0A0D2UUY3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G275200 PE=4 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 2.416e-47
Identity = 94/111 (84.68%), Postives = 100/111 (90.09%), Query Frame = -2
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            FSQYGEIVSVKIPVGKGCGFVQ+A R NAEEALQKLNG +IGKQTVRLSWGRNP NKQFR DYGNQWGGAYYGG VYDGY YA PPPH+PG+Y AAYG YP YGS+QQQV+
Sbjct:  309 FSQYGEIVSVKIPVGKGCGFVQYANRKNAEEALQKLNGMVIGKQTVRLSWGRNPANKQFRGDYGNQWGGAYYGGQVYDGYRYAVPPPHDPGMYAAAYGTYPIYGSHQQQVS 419          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: F6H1D6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g11080 PE=4 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 5.001e-47
Identity = 93/111 (83.78%), Postives = 101/111 (90.99%), Query Frame = -2
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            FSQYGEIVSVKIPVGKGCGFVQFA RNNAE+ALQKLNGT+IGKQTVRLSWGRNP NKQ RAD+GNQW GAYYGG VYDGYGYA PPPH+P +Y AAYG YP YG++QQQV+
Sbjct:  308 FSQYGEIVSVKIPVGKGCGFVQFANRNNAEDALQKLNGTVIGKQTVRLSWGRNPANKQMRADFGNQWSGAYYGGQVYDGYGYALPPPHDPTMYAAAYGAYPVYGNHQQQVS 418          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: M1ADU0_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400007990 PE=4 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 8.455e-47
Identity = 91/111 (81.98%), Postives = 100/111 (90.09%), Query Frame = -2
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            F+QYGEIVSVKIPVGKGCGFVQFA RN+AEEALQKLNGT IGKQTVRLSWGRNP NKQ R+D+GNQW G YYGG  YDGYGYAFPPPH+PG+Y AAYG YP YG++QQQV+
Sbjct:  286 FAQYGEIVSVKIPVGKGCGFVQFANRNDAEEALQKLNGTAIGKQTVRLSWGRNPANKQSRSDFGNQWTGPYYGGHFYDGYGYAFPPPHDPGMYAAAYGAYPVYGTHQQQVS 396          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: A0A0B2PYG7_GLYSO (Polyadenylate-binding protein RBP47C OS=Glycine soja GN=glysoja_008721 PE=4 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 6.059e-46
Identity = 90/111 (81.08%), Postives = 96/111 (86.49%), Query Frame = -2
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            FSQYGEIVSVKIPVGKGCGFVQFA RNNAEEALQKLNGT IGKQTVRLSWGRNP NKQFR D+G+ W GAYYG  +YDGYGYA PP H+P IY AAYG YP YG +QQQV+
Sbjct:  208 FSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRMDFGSPWTGAYYGAPMYDGYGYALPPRHDPSIYAAAYGAYPLYGGHQQQVS 318          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: V7CRK3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G019600g PE=4 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.225e-46
Identity = 91/111 (81.98%), Postives = 97/111 (87.39%), Query Frame = -2
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            FSQYGEIVSVKIPVGKGCGFVQFA RNNAEEALQKLNGT IGKQTVRLSWGRNP NKQFR D+GN W GAYYG  +YDGYGYA PP H+P IY AAYG YP YG++QQQV+
Sbjct:  305 FSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRMDFGNPWTGAYYGAPIYDGYGYALPPRHDPSIYAAAYGAYPLYGAHQQQVS 415          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: T2DLH7_PHAVU (RNA binding post-transcriptional regulator csx1 like protein OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 9.796e-46
Identity = 91/111 (81.98%), Postives = 97/111 (87.39%), Query Frame = -2
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            FSQYGEIVSVKIPVGKGCGFVQFA RNNAEEALQKLNGT IGKQTVRLSWGRNP NKQFR D+GN W GAYYG  +YDGYGYA PP H+P IY AAYG YP YG++QQQV+
Sbjct:  306 FSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRMDFGNPWTGAYYGAPIYDGYGYALPPRHDPSIYAAAYGAYPLYGAHQQQVS 416          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: A0A0B2QRK5_GLYSO (Polyadenylate-binding protein RBP47C OS=Glycine soja GN=glysoja_022058 PE=4 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.165e-45
Identity = 93/111 (83.78%), Postives = 97/111 (87.39%), Query Frame = -2
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            FSQYGEIVSVKIPVGKGCGFVQFA RNNAEEALQKLNGT IGKQ VRLSWGRNP NKQFRAD+GN W GAYYGG VYDGYGYA PP H+P IY AAYG YP YG +QQQV+
Sbjct:  301 FSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQMVRLSWGRNPANKQFRADFGNAWSGAYYGGPVYDGYGYALPPSHDPSIYAAAYGAYPIYGGHQQQVS 411          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Match: A0A0B2SHY4_GLYSO (Polyadenylate-binding protein RBP47C OS=Glycine soja GN=glysoja_045312 PE=4 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.041e-45
Identity = 90/111 (81.08%), Postives = 95/111 (85.59%), Query Frame = -2
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            FSQYGEIVSVKIPVGKGCGFVQFA RNNAEEALQKLNGT IGKQTVRLSWGRNP NKQFR D+GN W GAYYG  +YDGYGYA  P H+P IY AAYG YP YG +QQQV+
Sbjct:  208 FSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTSIGKQTVRLSWGRNPANKQFRMDFGNPWTGAYYGAPMYDGYGYALTPRHDPSIYAAAYGAYPLYGGHQQQVS 318          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: R47CP_ARATH (Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana GN=RBP47C' PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 6.348e-35
Identity = 79/111 (71.17%), Postives = 88/111 (79.28%), Query Frame = -2
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            FS++GEIVSVKIPVGKGCGFVQF  R NAEEAL+KLNGT+IGKQTVRLSWGRNP NKQ R  YGNQW   YYGG  Y+GYGY  P P +P +Y AA   YP YG +QQQV+
Sbjct:  326 FSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGYMVPQP-DPRMYPAA-PYYPMYGGHQQQVS 434          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: RB47C_ARATH (Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana GN=RBP47C PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.245e-34
Identity = 78/111 (70.27%), Postives = 88/111 (79.28%), Query Frame = -2
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQQVN 343
            F+++GEIVSVKIPVGKGCGFVQF  R NAEEAL+KLNGT+IGKQTVRLSWGRNP NKQ R  YGNQW   YYGG  Y+GYGY  P P +P +Y AA   YP YG +QQQV+
Sbjct:  324 FNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYGYMVPQP-DPRMYPAA-PYYPMYGGHQQQVS 432          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: RBP47_NICPL (Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia GN=RBP47 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.673e-28
Identity = 66/114 (57.89%), Postives = 83/114 (72.81%), Query Frame = -2
Query:   11 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYT--AAYGVYP-FYGSYQQQVN 343
            F+Q+GE+VSVKIP GKGCGFVQF+ R++A+EA+QKL+G +IGKQ VRLSWGR+P NKQ R D G+QW G Y G   Y GYGY      + G+Y   AAYG     YG++QQ V+
Sbjct:  315 FNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPANKQMRTDSGSQWNGGYNGRQNYGGYGYGASQNQDSGMYATGAAYGASSNRYGNHQQPVS 428          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: RB47B_ARATH (Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana GN=RBP47B PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.785e-27
Identity = 50/67 (74.63%), Postives = 59/67 (88.06%), Query Frame = -2
Query:  143 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQW 343
            FSQ+GE+VSVKIPVGKGCGFVQFA R +AE+A++ LNGT+IGK TVRLSWGR+P NKQ+R D G QW
Sbjct:  341 FSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSP-NKQWRGDSGQQW 406          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: RB47A_ARATH (Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana GN=RBP47A PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.168e-27
Identity = 51/67 (76.12%), Postives = 59/67 (88.06%), Query Frame = -2
Query:  143 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQW 343
            FS +GE+VSVKIPVGKGCGFVQFA R +AEEA+  LNGT+IGK TVRLSWGR+P NKQ+R+D GNQW
Sbjct:  347 FSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSP-NKQWRSDSGNQW 412          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: RBP45_NICPL (Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia GN=RBP45 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.618e-21
Identity = 55/108 (50.93%), Postives = 67/108 (62.04%), Query Frame = -2
Query:   20 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADYGNQWXXXXXXXXXXXXXXXAFPPPHNPGIYTAAYGVYPFYGSYQQ 343
            FS YGE+V VKI  GK CGFVQF  R +AE+AL  LNGT +G Q++RLSWGR+P++KQ         GGAYYG           PP  +P +Y   YG YP Y +YQQ
Sbjct:  302 FSPYGELVHVKIVAGKRCGFVQFGTRASAEQALSSLNGTQLGGQSIRLSWGRSPSSKQTDQTQWGGSGGAYYGYGQGYEAYGYAPPAQDPNMY---YGNYPGYANYQQ 406          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: RB45B_ARATH (Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana GN=RBP45B PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.299e-20
Identity = 41/58 (70.69%), Postives = 48/58 (82.76%), Query Frame = -2
Query:  170 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQ 343
            FSQYGEIV VKIP GK CGFVQF+ ++ AEEAL+ LNG  +G  TVRLSWGR+P+NKQ
Sbjct:  281 FSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSPSNKQ 338          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: RP45C_ARATH (Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana GN=RBP45C PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.456e-19
Identity = 39/62 (62.90%), Postives = 49/62 (79.03%), Query Frame = -2
Query:  158 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRAD 343
            F Q+GE+V VKIP GK CGFVQ+A R  AE+AL  LNGT +G Q++RLSWGR+P+NKQ + D
Sbjct:  298 FGQFGELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGRSPSNKQTQPD 359          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: RB45A_ARATH (Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana GN=RBP45A PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.971e-16
Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = -2
Query:  155 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNPTNKQFRADY 343
            F Q+GE++ VKIP GK CGFVQ+A + +AE AL  LNGT +G Q++RLSWGR+P  +  +A +
Sbjct:  280 FGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSPNKQSDQAQW 342          
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Match: R47BP_ARATH (Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana GN=RBP47B' PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.457e-14
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = -2
Query:  182 FSQYGEIVSVKIPVGKGCGFVQFAGRNNAEEALQKLNGTMIGKQTVRLSWGRNP 343
            FSQ GE++ VKIP  KG G+VQF  R +AEEA+Q++ G +IG+Q VR+SW +NP
Sbjct:  257 FSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNP 310          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2QK31_GOSRA8.526e-5799.10Uncharacterized protein OS=Gossypium raimondii GN=... [more]
W9R830_9ROSA1.743e-4784.68Polyadenylate-binding protein RBP47C OS=Morus nota... [more]
A0A0D2UUY3_GOSRA2.416e-4784.68Uncharacterized protein OS=Gossypium raimondii GN=... [more]
F6H1D6_VITVI5.001e-4783.78Putative uncharacterized protein OS=Vitis vinifera... [more]
M1ADU0_SOLTU8.455e-4781.98Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
A0A0B2PYG7_GLYSO6.059e-4681.08Polyadenylate-binding protein RBP47C OS=Glycine so... [more]
V7CRK3_PHAVU8.225e-4681.98Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
T2DLH7_PHAVU9.796e-4681.98RNA binding post-transcriptional regulator csx1 li... [more]
A0A0B2QRK5_GLYSO1.165e-4583.78Polyadenylate-binding protein RBP47C OS=Glycine so... [more]
A0A0B2SHY4_GLYSO2.041e-4581.08Polyadenylate-binding protein RBP47C OS=Glycine so... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0011612 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
R47CP_ARATH6.348e-3571.17Polyadenylate-binding protein RBP47C' OS=Arabidops... [more]
RB47C_ARATH2.245e-3470.27Polyadenylate-binding protein RBP47C OS=Arabidopsi... [more]
RBP47_NICPL1.673e-2857.89Polyadenylate-binding protein RBP47 OS=Nicotiana p... [more]
RB47B_ARATH3.785e-2774.63Polyadenylate-binding protein RBP47B OS=Arabidopsi... [more]
RB47A_ARATH5.168e-2776.12Polyadenylate-binding protein RBP47A OS=Arabidopsi... [more]
RBP45_NICPL6.618e-2150.93Polyadenylate-binding protein RBP45 OS=Nicotiana p... [more]
RB45B_ARATH2.299e-2070.69Polyadenylate-binding protein RBP45B OS=Arabidopsi... [more]
RP45C_ARATH1.456e-1962.90Polyadenylate-binding protein RBP45C OS=Arabidopsi... [more]
RB45A_ARATH3.971e-1653.97Polyadenylate-binding protein RBP45A OS=Arabidopsi... [more]
R47BP_ARATH4.457e-1457.41Polyadenylate-binding protein RBP47B' OS=Arabidops... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 1..78
NoneNo IPR availablePANTHERPTHR24012:SF352SUBFAMILY NOT NAMEDcoord: 1..78

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0011612 ID=g.arboreum_cottongen_reftransV1_0011612; Name=g.arboreum_cottongen_reftransV1_0011612; organism=Gossypium arboreum; type=contig; length=344bp
TATTATCTCAGTTTACTTGTTGCTGGTAACTGCCATAGAATGGATAAACC
CCATACGCAGCCGTATATATACCCGGGTTATGAGGTGGTGGAAAAGCATA
TCCATAGCCATCATACACCGCTCCTCCATAGTAAGCTCCACCCCATTGGT
TACCATAATCTGCTCTAAACTGCTTATTTGTAGGATTGCGTCCCCAAGAG
AGTCTCACTGTTTGCTTGCCAATCATAGTCCCATTCAACTTTTGCAATGC
CTCCTCAGCATTGTTCCTCCCGGCGAATTGTACAAACCCGCATCCTTTTC
CAACAGGTATTTTAACAGAGACTATTTCACCATATTGAGAGAAA
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