g.arboreum_cottongen_reftransV1_0013881, g.arboreum_cottongen_reftransV1_0013881 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0013881
Unique Name	g.arboreum_cottongen_reftransV1_0013881
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	520

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr7	chromosome	g.arboreum_cottongen_reftransV1_0013881:1..520 . Chr7:88691012..88692564 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy TrEMBL
Match: A0A0B0ND82_GOSAR (Nuclear-pore anchor-like protein OS=Gossypium arboreum GN=F383_02473 PE=4 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 1.510e-106
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = -2

Query:    1 LHSRIEAMHIQYAEKDRGSALAESSVPDSHGDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEESAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVVHKHKIESEALESQLMERQFEVEASKKEIEKHLREREI 519
            LHSRIEAMHIQYAEKDRGSALAESSVPDSHGDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEESAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVVHKHKIESEALESQLMERQFEVEASKKEIEKHLREREI
Sbjct: 1161 LHSRIEAMHIQYAEKDRGSALAESSVPDSHGDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEESAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVVHKHKIESEALESQLMERQFEVEASKKEIEKHLREREI 1333

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy TrEMBL
Match: A0A0D2Q444_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G110900 PE=4 SV=1)

HSP 1 Score: 340.502 bits (872), Expect = 1.196e-105
Identity = 169/173 (97.69%), Postives = 171/173 (98.84%), Query Frame = -2

Query:    1 LHSRIEAMHIQYAEKDRGSALAESSVPDSHGDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEESAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVVHKHKIESEALESQLMERQFEVEASKKEIEKHLREREI 519
            LHSRIEAMHIQ+AEKDRGSALAESSVPDSHGDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEE+AKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREV HKHKIESEALESQLMERQFEVEASKKEIEKHL EREI
Sbjct:  431 LHSRIEAMHIQFAEKDRGSALAESSVPDSHGDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEENAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVAHKHKIESEALESQLMERQFEVEASKKEIEKHLTEREI 603

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy TrEMBL
Match: A0A0D2R431_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G110900 PE=4 SV=1)

HSP 1 Score: 340.502 bits (872), Expect = 2.222e-105
Identity = 169/173 (97.69%), Postives = 171/173 (98.84%), Query Frame = -2

Query:    1 LHSRIEAMHIQYAEKDRGSALAESSVPDSHGDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEESAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVVHKHKIESEALESQLMERQFEVEASKKEIEKHLREREI 519
            LHSRIEAMHIQ+AEKDRGSALAESSVPDSHGDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEE+AKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREV HKHKIESEALESQLMERQFEVEASKKEIEKHL EREI
Sbjct:  566 LHSRIEAMHIQFAEKDRGSALAESSVPDSHGDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEENAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVAHKHKIESEALESQLMERQFEVEASKKEIEKHLTEREI 738

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy TrEMBL
Match: A0A0D2NL94_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G110900 PE=4 SV=1)

HSP 1 Score: 339.347 bits (869), Expect = 4.976e-104
Identity = 169/173 (97.69%), Postives = 171/173 (98.84%), Query Frame = -2

Query:    1 LHSRIEAMHIQYAEKDRGSALAESSVPDSHGDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEESAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVVHKHKIESEALESQLMERQFEVEASKKEIEKHLREREI 519
            LHSRIEAMHIQ+AEKDRGSALAESSVPDSHGDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEE+AKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREV HKHKIESEALESQLMERQFEVEASKKEIEKHL EREI
Sbjct: 1161 LHSRIEAMHIQFAEKDRGSALAESSVPDSHGDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEENAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVAHKHKIESEALESQLMERQFEVEASKKEIEKHLTEREI 1333

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy TrEMBL
Match: A0A0D2M9G9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G110900 PE=4 SV=1)

HSP 1 Score: 339.347 bits (869), Expect = 4.992e-104
Identity = 169/173 (97.69%), Postives = 171/173 (98.84%), Query Frame = -2

Query:    1 LHSRIEAMHIQYAEKDRGSALAESSVPDSHGDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEESAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVVHKHKIESEALESQLMERQFEVEASKKEIEKHLREREI 519
            LHSRIEAMHIQ+AEKDRGSALAESSVPDSHGDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEE+AKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREV HKHKIESEALESQLMERQFEVEASKKEIEKHL EREI
Sbjct: 1161 LHSRIEAMHIQFAEKDRGSALAESSVPDSHGDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEENAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVAHKHKIESEALESQLMERQFEVEASKKEIEKHLTEREI 1333

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy TrEMBL
Match: A0A0D2QB67_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G110900 PE=4 SV=1)

HSP 1 Score: 339.347 bits (869), Expect = 5.191e-104
Identity = 169/173 (97.69%), Postives = 171/173 (98.84%), Query Frame = -2

Query:    1 LHSRIEAMHIQYAEKDRGSALAESSVPDSHGDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEESAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVVHKHKIESEALESQLMERQFEVEASKKEIEKHLREREI 519
            LHSRIEAMHIQ+AEKDRGSALAESSVPDSHGDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEE+AKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREV HKHKIESEALESQLMERQFEVEASKKEIEKHL EREI
Sbjct: 1161 LHSRIEAMHIQFAEKDRGSALAESSVPDSHGDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEENAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVAHKHKIESEALESQLMERQFEVEASKKEIEKHLTEREI 1333

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy TrEMBL
Match: A0A061FAB9_THECC (Nucleoprotein TPR, putative isoform 1 OS=Theobroma cacao GN=TCM_033594 PE=4 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.749e-79
Identity = 138/175 (78.86%), Postives = 155/175 (88.57%), Query Frame = -2

Query:    1 LHSRIEAMHIQYAEKDRGSA--LAESSVPDSHGDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEESAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVVHKHKIESEALESQLMERQFEVEASKKEIEKHLREREI 519
            LHSRIEA+HIQ AEKDRGS+  L+ S+V D  GDSGLQNV+NYLRRTK+IAETEISLLKQEKLRLQSQ+ENALKA E+A+ATLNAERAN RA LMTE+EIKSLQHQ+REMNLLRESNMQLREENKHNFEECQ LRE   K++IESE LESQLM+RQ E+EASKKEIE +  ER+ 
Sbjct: 1162 LHSRIEALHIQLAEKDRGSSVILSRSAVQDPLGDSGLQNVVNYLRRTKEIAETEISLLKQEKLRLQSQIENALKAAETAQATLNAERANIRAALMTEEEIKSLQHQVREMNLLRESNMQLREENKHNFEECQNLREAAQKNRIESETLESQLMKRQIELEASKKEIEIYRTERDC 1336

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy TrEMBL
Match: A0A061FB83_THECC (Nucleoprotein TPR, putative isoform 2 OS=Theobroma cacao GN=TCM_033594 PE=4 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.750e-79
Identity = 138/175 (78.86%), Postives = 155/175 (88.57%), Query Frame = -2

Query:    1 LHSRIEAMHIQYAEKDRGSA--LAESSVPDSHGDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEESAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVVHKHKIESEALESQLMERQFEVEASKKEIEKHLREREI 519
            LHSRIEA+HIQ AEKDRGS+  L+ S+V D  GDSGLQNV+NYLRRTK+IAETEISLLKQEKLRLQSQ+ENALKA E+A+ATLNAERAN RA LMTE+EIKSLQHQ+REMNLLRESNMQLREENKHNFEECQ LRE   K++IESE LESQLM+RQ E+EASKKEIE +  ER+ 
Sbjct: 1163 LHSRIEALHIQLAEKDRGSSVILSRSAVQDPLGDSGLQNVVNYLRRTKEIAETEISLLKQEKLRLQSQIENALKAAETAQATLNAERANIRAALMTEEEIKSLQHQVREMNLLRESNMQLREENKHNFEECQNLREAAQKNRIESETLESQLMKRQIELEASKKEIEIYRTERDC 1337

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy TrEMBL
Match: A5AYB9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040288 PE=4 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 4.855e-67
Identity = 124/173 (71.68%), Postives = 145/173 (83.82%), Query Frame = -2

Query:    4 LHSRIEAMHIQYAEKDRGS-ALAESSVPDSHGDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEESAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVVHKHKIESEALESQLMERQFEVEASKKEIEKHLRERE 519
            LHSR+EA+HI+ AEKDR S  ++ SS  D  GD+GLQNVINYLRR+K+IAETEISLLKQEKLRLQSQLE+ALKA E+A+A+L+AERANSR +L TE+EIKSLQ Q+REMNLLRESNMQ+REENKHNFEECQKLREV  K +IE+E LE  L E Q EVE  KKEIE    E++
Sbjct:  553 LHSRLEALHIKLAEKDRRSVGISSSSGLDPLGDAGLQNVINYLRRSKEIAETEISLLKQEKLRLQSQLESALKATETAQASLHAERANSRTLLFTEEEIKSLQLQVREMNLLRESNMQIREENKHNFEECQKLREVAQKARIETENLEVLLRESQTEVETCKKEIEMQRTEKD 725

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy TrEMBL
Match: D7T103_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0085g01090 PE=4 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 7.747e-67
Identity = 124/173 (71.68%), Postives = 145/173 (83.82%), Query Frame = -2

Query:    4 LHSRIEAMHIQYAEKDRGS-ALAESSVPDSHGDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEESAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVVHKHKIESEALESQLMERQFEVEASKKEIEKHLRERE 519
            LHSR+EA+HI+ AEKDR S  ++ SS  D  GD+GLQNVINYLRR+K+IAETEISLLKQEKLRLQSQLE+ALKA E+A+A+L+AERANSR +L TE+EIKSLQ Q+REMNLLRESNMQ+REENKHNFEECQKLREV  K +IE+E LE  L E Q EVE  KKEIE    E++
Sbjct: 1166 LHSRLEALHIKLAEKDRRSVGISSSSGLDPLGDAGLQNVINYLRRSKEIAETEISLLKQEKLRLQSQLESALKATETAQASLHAERANSRTLLFTEEEIKSLQLQVREMNLLRESNMQIREENKHNFEECQKLREVAQKARIETENLEVLLRESQTEVETCKKEIEMQRTEKD 1338

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy Swiss-Prot
Match: NUA_ARATH (Nuclear-pore anchor OS=Arabidopsis thaliana GN=NUA PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 2.908e-56
Identity = 105/168 (62.50%), Postives = 131/168 (77.98%), Query Frame = -2

Query:   22 LHSRIEAMHIQYAEKDRGSALAESSVPDSH--GDSGLQNVINYLRRTKQIAETEISLLKQEKLRLQSQLENALKAEESAKATLNAERANSRAVLMTEDEIKSLQHQIREMNLLRESNMQLREENKHNFEECQKLREVVHKHKIESEALESQLMERQFEVEASKKEIEK 519
            LHSR+EA H+  AEK+  S    S   DS    DSGLQ V++YLRRTK+IAETEISL++QEKLRLQSQLE+ALK  ESA+ +L AERA++RA L+T+D IKSLQ Q+ EMNLLRESNMQLREENKHNFE+CQ++REV  K ++ESE  E+ L  +Q E++   KE+EK
Sbjct: 1165 LHSRLEAKHLNSAEKNSRSGTISSGSTDSDHLEDSGLQRVVHYLRRTKEIAETEISLMRQEKLRLQSQLESALKMAESARGSLTAERASTRASLLTDDGIKSLQLQVSEMNLLRESNMQLREENKHNFEKCQEMREVAQKARMESENFENLLKTKQTELDLCMKEMEK 1332

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0ND82_GOSAR	1.510e-106	100.00	Nuclear-pore anchor-like protein OS=Gossypium arbo...	[more]
A0A0D2Q444_GOSRA	1.196e-105	97.69	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2R431_GOSRA	2.222e-105	97.69	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2NL94_GOSRA	4.976e-104	97.69	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2M9G9_GOSRA	4.992e-104	97.69	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2QB67_GOSRA	5.191e-104	97.69	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061FAB9_THECC	1.749e-79	78.86	Nucleoprotein TPR, putative isoform 1 OS=Theobroma...	[more]
A0A061FB83_THECC	1.750e-79	78.86	Nucleoprotein TPR, putative isoform 2 OS=Theobroma...	[more]
A5AYB9_VITVI	4.855e-67	71.68	Putative uncharacterized protein OS=Vitis vinifera...	[more]
D7T103_VITVI	7.747e-67	71.68	Putative uncharacterized protein OS=Vitis vinifera...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0013881 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1


Match Name	E-value	Identity	Description
NUA_ARATH	2.908e-56	62.50	Nuclear-pore anchor OS=Arabidopsis thaliana GN=NUA...	[more]

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 39..87
None	No IPR available	COILS	Coil	Coil	coord: 129..149
None	No IPR available	COILS	Coil	Coil	coord: 101..121
None	No IPR available	PANTHER	PTHR18898	NUCLEOPROTEIN TPR-RELATED	coord: 2..172

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0013881 ID=g.arboreum_cottongen_reftransV1_0013881; Name=g.arboreum_cottongen_reftransV1_0013881; organism=Gossypium arboreum; type=contig; length=520bp
GATCTCTCTCTCTCTCAGATGCTTTTCAATTTCCTTTTTAGAAGCTTCAA
CCTCAAATTGCCTCTCCATCAGCTGGCTCTCTAGAGCTTCAGATTCAATC
TTATGTTTATGAACCACCTCACGTAATTTCTGGCATTCCTCAAAATTGTG
CTTGTTCTCCTCTCTAAGCTGCATGTTGCTTTCACGGAGTAAATTCATTT
CCCTGATCTGGTGCTGTAAAGACTTGATCTCATCCTCTGTCATCAACACT
GCTCTTGAATTGGCACGCTCAGCATTAAGTGTGGCTTTGGCACTTTCTTC
TGCCTTAAGAGCATTCTCAAGTTGTGATTGCAACCGTAGCTTCTCCTGCT
TCAATAAAGATATCTCTGTTTCCGCTATTTGTTTTGTCCGTCGGAGGTAA
TTAATGACATTCTGCAAACCAGAATCACCATGTGAATCTGGAACAGAACT
TTCAGCAAGTGCAGAACCACGATCTTTCTCAGCATACTGAATATGCATAG
CTTCAATCCGGCTGTGCAAT

Search form

g.arboreum_cottongen_reftransV1_0013881, g.arboreum_cottongen_reftransV1_0013881 (contig) Gossypium arboreum

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